MGE detailed information
MGE type: Prophage MGE length: 52275 bp
Accession: NZ_CP055194 Location: 4415785..4468059 Organism: Shigella flexneri strain STEFF_10 Replicon: chromosome
Accession: NZ_CP055194 Location: 4415785..4468059 Organism: Shigella flexneri strain STEFF_10 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUZ40_RS21380 (4410840) | 4410840..4411256 | - | 417 | WP_000270375.1 | secondary thiamine-phosphate synthase enzyme YjbQ | - |
| HUZ40_RS21385 (4411367) | 4411367..4412080 | - | 714 | WP_001226928.1 | acid phosphatase AphA | - |
| HUZ40_RS21390 (4412482) | 4412482..4412704 | + | 223 | Protein_4193 | hypothetical protein | - |
| HUZ40_RS21395 (4412734) | 4412734..4412985 | + | 252 | WP_000275035.1 | hypothetical protein | - |
| HUZ40_RS21400 (4413207) | 4413207..4414400 | - | 1194 | WP_000486994.1 | aromatic amino acid transaminase | - |
| HUZ40_RS21405 (4414653) | 4414653..4415732 | - | 1080 | WP_001147328.1 | alanine racemase | - |
| HUZ40_RS21410 (4415785) | 4415785..4417200 | - | 1416 | WP_000918363.1 | replicative DNA helicase | - |
| HUZ40_RS21415 (4417283) | 4417283..4418266 | + | 984 | WP_000235522.1 | L-threonine 3-dehydrogenase | VF |
| HUZ40_RS21420 (4418432) | 4418432..4418674 | - | 243 | WP_000891404.1 | envelope stress response protein PspG | - |
| HUZ40_RS21425 (4418808) | 4418808..4419845 | - | 1038 | WP_000543841.1 | tRNA dihydrouridine(20/20a) synthase DusA | - |
| HUZ40_RS21430 (4419934) | 4419934..4421031 | + | 1098 | WP_000332259.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| HUZ40_RS21435 (4421092) | 4421092..4421340 | + | 249 | WP_001217553.1 | DinI-like family protein | - |
| HUZ40_RS21440 (4421563) | 4421563..4422114 | + | 552 | WP_000543834.1 | SLATT domain-containing protein | - |
| HUZ40_RS21445 (4422092) | 4422092..4423462 | + | 1371 | WP_001678535.1 | reverse transcriptase domain-containing protein | - |
| HUZ40_RS21450 (4423570) | 4423570..4423857 | - | 288 | Protein_4205 | hypothetical protein | - |
| HUZ40_RS21455 (4423900) | 4423900..4427115 | - | 3216 | WP_239637853.1 | prophage tail fiber N-terminal domain and S74 family endopeptidase-containing protein | - |
| HUZ40_RS21460 (4427180) | 4427180..4427779 | - | 600 | WP_016238915.1 | hypothetical protein | VF |
| HUZ40_RS21465 (4427848) | 4427848..4431243 | - | 3396 | WP_187170641.1 | host specificity protein J | - |
| HUZ40_RS21470 (4431310) | 4431310..4431648 | - | 339 | WP_153274582.1 | hypothetical protein | - |
| HUZ40_RS21475 (4431721) | 4431721..4432323 | - | 603 | WP_000090865.1 | tail assembly protein | - |
| HUZ40_RS21480 (4432260) | 4432260..4433003 | - | 744 | WP_187170642.1 | C40 family peptidase | - |
| HUZ40_RS21485 (4433008) | 4433008..4433706 | - | 699 | WP_217823263.1 | phage minor tail protein L | - |
| HUZ40_RS21490 (4433716) | 4433716..4434045 | - | 330 | WP_000447253.1 | phage tail protein | - |
| HUZ40_RS21495 (4434045) | 4434045..4437110 | - | 3066 | WP_187170675.1 | phage tail tape measure protein | - |
| HUZ40_RS21500 (4437082) | 4437082..4437411 | - | 330 | WP_001161009.1 | phage tail assembly protein T | - |
| HUZ40_RS21505 (4437420) | 4437420..4437806 | - | 387 | WP_001370402.1 | phage minor tail protein G | - |
| HUZ40_RS21510 (4437867) | 4437867..4438610 | - | 744 | WP_187170673.1 | phage tail protein | - |
| HUZ40_RS21515 (4438621) | 4438621..4439022 | - | 402 | WP_001079419.1 | phage minor tail U family protein | - |
| HUZ40_RS21520 (4439019) | 4439019..4439597 | - | 579 | WP_000677112.1 | phage tail protein | - |
| HUZ40_RS21525 (4439609) | 4439609..4439884 | - | 276 | WP_001283153.1 | DNA breaking-rejoining protein | - |
| HUZ40_RS21530 (4439877) | 4439877..4440200 | - | 324 | WP_001097045.1 | DUF2190 family protein | - |
| HUZ40_RS21535 (4440287) | 4440287..4442314 | - | 2028 | WP_001360054.1 | ATP-dependent Clp protease proteolytic subunit | VF |
| HUZ40_RS21540 (4442259) | 4442259..4443767 | - | 1509 | WP_187170672.1 | phage portal protein | - |
| HUZ40_RS21545 (4443767) | 4443767..4443979 | - | 213 | WP_149477636.1 | hypothetical protein | - |
| HUZ40_RS21550 (4443976) | 4443976..4446078 | - | 2103 | WP_001401096.1 | phage terminase large subunit family protein | - |
| HUZ40_RS21555 (4446078) | 4446078..4446569 | - | 492 | WP_001401095.1 | DUF1441 family protein | - |
| HUZ40_RS21560 (4447247) | 4447247..4447486 | - | 240 | WP_046657214.1 | hypothetical protein | - |
| HUZ40_RS21565 (4447526) | 4447526..4447987 | - | 462 | WP_046657216.1 | lysis protein | - |
| HUZ40_RS21570 (4447984) | 4447984..4448481 | - | 498 | WP_089581675.1 | lysozyme RrrD | - |
| HUZ40_RS21575 (4448481) | 4448481..4448696 | - | 216 | WP_000839596.1 | phage lysis protein EssD | - |
| HUZ40_RS21580 (4448764) | 4448764..4449816 | - | 1053 | WP_000799656.1 | site-specific DNA-methyltransferase | - |
| HUZ40_RS21585 (4449967) | 4449967..4450170 | - | 204 | WP_000917724.1 | hypothetical protein | - |
| HUZ40_RS21590 (4450424) | 4450424..4451176 | - | 753 | WP_001047110.1 | antitermination protein | - |
| HUZ40_RS21595 (4451190) | 4451190..4452179 | - | 990 | WP_001360050.1 | DUF968 domain-containing protein | - |
| HUZ40_RS21600 (4452187) | 4452187..4452996 | - | 810 | WP_058905684.1 | KilA-N domain-containing protein | - |
| HUZ40_RS21605 (4453016) | 4453016..4453405 | - | 390 | WP_000767133.1 | RusA family crossover junction endodeoxyribonuclease | - |
| HUZ40_RS21610 (4453402) | 4453402..4453728 | - | 327 | WP_000210154.1 | LexA family transcriptional regulator | - |
| HUZ40_RS21615 (4453725) | 4453725..4454378 | - | 654 | WP_001401088.1 | phage N-6-adenine-methyltransferase | - |
| HUZ40_RS21620 (4454378) | 4454378..4454872 | - | 495 | WP_001332382.1 | PerC family transcriptional regulator | - |
| HUZ40_RS21625 (4454869) | 4454869..4455687 | - | 819 | WP_124064666.1 | helix-turn-helix domain-containing protein | - |
| HUZ40_RS21630 (4455684) | 4455684..4455920 | - | 237 | WP_000933942.1 | hypothetical protein | - |
| HUZ40_RS21635 (4455913) | 4455913..4456491 | - | 579 | WP_223677318.1 | ash family protein | - |
| HUZ40_RS21640 (4456421) | 4456421..4456600 | - | 180 | WP_001341559.1 | DUF4222 domain-containing protein | - |
| HUZ40_RS21645 (4456746) | 4456746..4457297 | - | 552 | WP_000515860.1 | protein YmfL | - |
| HUZ40_RS21650 (4457341) | 4457341..4457541 | - | 201 | WP_000649477.1 | YdaS family helix-turn-helix protein | - |
| HUZ40_RS21655 (4457632) | 4457632..4458306 | + | 675 | WP_000859460.1 | LexA family transcriptional regulator | - |
| HUZ40_RS21660 (4458975) | 4458975..4459337 | + | 363 | WP_000135682.1 | protein YfdP | - |
| HUZ40_RS21665 (4459403) | 4459403..4460227 | + | 825 | WP_001753751.1 | DUF2303 family protein | - |
| HUZ40_RS21670 (4460414) | 4460414..4461196 | + | 783 | WP_000610754.1 | hypothetical protein | - |
| HUZ40_RS21675 (4461233) | 4461233..4461502 | + | 270 | WP_001093912.1 | pyocin activator PrtN family protein | - |
| HUZ40_RS21680 (4461536) | 4461536..4462084 | - | 549 | WP_059274466.1 | hypothetical protein | Toxin Detail |
| HUZ40_RS21685 (4462107) | 4462107..4462580 | - | 474 | WP_000287252.1 | DUF4065 domain-containing protein | Antitoxin Detail |
| HUZ40_RS21690 (4462885) | 4462885..4462989 | - | 105 | Protein_4253 | tRNA-dihydrouridine synthase | - |
| HUZ40_RS21695 (4463353) | 4463353..4464375 | - | 1023 | WP_000912594.1 | DUF2713 family protein | - |
| HUZ40_RS21700 (4464693) | 4464693..4465208 | + | 516 | WP_001295691.1 | zinc uptake transcriptional repressor Zur | - |
| HUZ40_RS21705 (4465250) | 4465250..4465459 | - | 210 | WP_001030593.1 | CsbD family protein | - |
| HUZ40_RS21710 (4465575) | 4465575..4466900 | - | 1326 | WP_001347655.1 | MATE family efflux transporter DinF | - |
| HUZ40_RS21715 (4466973) | 4466973..4467581 | - | 609 | WP_000646078.1 | transcriptional repressor LexA | - |
| HUZ40_RS21720 (4467691) | 4467691..4468059 | - | 369 | WP_000002907.1 | diacylglycerol kinase | - |
| HUZ40_RS21725 (4468230) | 4468230..4470653 | + | 2424 | WP_000017354.1 | glycerol-3-phosphate 1-O-acyltransferase PlsB | - |
| HUZ40_RS21730 (4470808) | 4470808..4471680 | - | 873 | WP_000455228.1 | 4-hydroxybenzoate octaprenyltransferase | - |
| HUZ40_RS21735 (4471693) | 4471693..4472190 | - | 498 | WP_001297295.1 | chorismate lyase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|