MGE detailed information
MGE type: Prophage MGE length: 36190 bp
Accession: NZ_CP055184 Location: 1985883..2022072 Organism: Shigella flexneri strain STEFF_16 Replicon: chromosome
Accession: NZ_CP055184 Location: 1985883..2022072 Organism: Shigella flexneri strain STEFF_16 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUZ44_RS09515 () | 1981149..1981889 | + | 741 | WP_000907248.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| HUZ44_RS09520 () | 1981924..1982445 | + | 522 | WP_001295503.1 | crossover junction endodeoxyribonuclease RuvC | - |
| HUZ44_RS09525 () | 1982447..1983049 | - | 603 | WP_001024930.1 | YebB family permuted papain-like enzyme | - |
| HUZ44_RS09530 () | 1983120..1983185 | + | 66 | WP_001386853.1 | stress response small protein YobI | - |
| HUZ44_RS09535 () | 1983324..1983935 | + | 612 | WP_001597908.1 | Holliday junction branch migration protein RuvA | - |
| HUZ44_RS09540 () | 1983944..1984954 | + | 1011 | WP_000568519.1 | Holliday junction branch migration DNA helicase RuvB | - |
| HUZ44_RS09545 () | 1985101..1985886 | - | 786 | WP_001597907.1 | zinc ABC transporter permease subunit ZnuB | - |
| HUZ44_RS09550 () | 1985883..1986638 | - | 756 | WP_000202996.1 | Zinc import ATP-binding protein ZnuC | VF |
| HUZ44_RS09555 () | 1986717..1987649 | + | 933 | WP_001342995.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| HUZ44_RS09560 () | 1987665..1988987 | + | 1323 | WP_001184045.1 | murein DD-endopeptidase MepM | - |
| HUZ44_RS09565 () | 1989107..1990078 | + | 972 | WP_000448381.1 | Lipid A biosynthesis myristoyltransferase | VF |
| HUZ44_RS09570 () | 1990209..1991651 | - | 1443 | WP_000091148.1 | pyruvate kinase | - |
| HUZ44_RS09575 () | 1991779..1992648 | - | 870 | WP_001056706.1 | DNA-binding transcriptional regulator HexR | - |
| HUZ44_RS09580 () | 1992986..1994461 | + | 1476 | WP_000301730.1 | glucose-6-phosphate dehydrogenase | - |
| HUZ44_RS09585 () | 1994696..1996507 | + | 1812 | WP_001069469.1 | phosphogluconate dehydratase | - |
| HUZ44_RS09590 () | 1996544..1997185 | + | 642 | WP_000800512.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| HUZ44_RS09595 () | 1997241..1998419 | - | 1179 | WP_000173474.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| HUZ44_RS09600 () | 1998553..1998843 | + | 291 | WP_000257738.1 | DNA damage-inducible protein YebG | - |
| HUZ44_RS09605 () | 1998910..1999266 | + | 357 | WP_001295500.1 | protein YebF | - |
| HUZ44_RS09610 () | 1999593..2000252 | + | 660 | WP_000024745.1 | tellurite resistance TerB family protein | - |
| HUZ44_RS09615 () | 2000461..2002521 | + | 2061 | WP_000936923.1 | oligopeptidase B | - |
| HUZ44_RS09620 () | 2002518..2003180 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HUZ44_RS09625 () | 2003204..2003860 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| HUZ44_RS09630 () | 2003962..2004192 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HUZ44_RS09635 () | 2004331..2004705 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| HUZ44_RS09640 () | 2004709..2005581 | + | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| HUZ44_RS09645 () | 2005594..2005935 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2005963..2006234 | - | 272 | - | - | Antitoxin Detail |
| - | 2006093..2006196 | + | 104 | - | - | Toxin Detail |
| HUZ44_RS09650 () | 2006331..2006987 | + | 657 | Protein_1886 | protein-serine/threonine phosphatase | - |
| HUZ44_RS09655 () | 2006988..2007179 | - | 192 | WP_001296140.1 | YebW family protein | - |
| HUZ44_RS09660 () | 2007284..2007520 | - | 237 | WP_001295499.1 | YebV family protein | - |
| HUZ44_RS09665 () | 2007638..2009077 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HUZ44_RS09670 () | 2009157..2011790 | - | 2634 | WP_001297532.1 | hypothetical protein | VF |
| HUZ44_RS09675 () | 2011759..2013042 | - | 1284 | WP_001207283.1 | membrane integrity lipid transport subunit YebS | - |
| HUZ44_RS09680 () | 2013172..2013669 | + | 498 | WP_001043882.1 | L-methionine (R)-S-oxide reductase | - |
| HUZ44_RS09685 () | 2013766..2014464 | + | 699 | WP_000431370.1 | RNA chaperone ProQ | - |
| HUZ44_RS09690 () | 2014484..2016532 | + | 2049 | WP_001315679.1 | carboxy terminal-processing peptidase | - |
| HUZ44_RS09695 () | 2016724..2017605 | + | 882 | WP_000984517.1 | protease HtpX | - |
| HUZ44_RS09700 () | 2017651..2019024 | - | 1374 | WP_001127216.1 | MFS transporter | - |
| HUZ44_RS09705 () | 2019201..2019992 | + | 792 | WP_001262174.1 | DNA-binding transcriptional regulator KdgR | - |
| HUZ44_RS09710 () | 2020135..2020374 | - | 240 | WP_001211011.1 | YobH family protein | - |
| HUZ44_RS09715 () | 2020533..2020676 | + | 144 | WP_000714550.1 | PhoP/PhoQ regulator MgrB | - |
| HUZ44_RS09720 () | 2020751..2021038 | + | 288 | WP_001006866.1 | YebO family protein | - |
| HUZ44_RS09725 () | 2021707..2021850 | + | 144 | WP_001295496.1 | DUF2627 domain-containing protein | - |
| HUZ44_RS09730 () | 2021863..2022072 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| HUZ44_RS09735 () | 2022238..2023047 | + | 810 | WP_000010107.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| HUZ44_RS09740 () | 2023044..2023610 | - | 567 | WP_001296134.1 | manganese efflux pump MntP | - |
| HUZ44_RS09745 () | 2024039..2024497 | - | 459 | WP_000156255.1 | DUF986 family protein | - |
| HUZ44_RS09750 () | 2024552..2025403 | - | 852 | WP_001331209.1 | PTS mannose transporter subunit IID | - |
| HUZ44_RS09755 () | 2025416..2026216 | - | 801 | WP_000406926.1 | PTS mannose transporter subunit IIC | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|