Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2005963..2006234 | Replicon | chromosome |
| Accession | NZ_CP055184 | ||
| Organism | Shigella flexneri strain STEFF_16 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2006093..2006196 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2005963..2006234 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUZ44_RS09620 | 2002518..2003180 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HUZ44_RS09625 | 2003204..2003860 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| HUZ44_RS09630 | 2003962..2004192 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HUZ44_RS09635 | 2004331..2004705 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| HUZ44_RS09640 | 2004709..2005581 | + | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| HUZ44_RS09645 | 2005594..2005935 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2005963..2006234 | - | 272 | - | - | Antitoxin |
| - | 2006093..2006196 | + | 104 | - | - | Toxin |
| HUZ44_RS09650 | 2006331..2006987 | + | 657 | Protein_1886 | protein-serine/threonine phosphatase | - |
| HUZ44_RS09655 | 2006988..2007179 | - | 192 | WP_001296140.1 | YebW family protein | - |
| HUZ44_RS09660 | 2007284..2007520 | - | 237 | WP_001295499.1 | YebV family protein | - |
| HUZ44_RS09665 | 2007638..2009077 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1985883..2022072 | 36189 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T161819 NZ_CP055184:2006093-2006196 [Shigella flexneri]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT161819 NZ_CP055184:c2006234-2005963 [Shigella flexneri]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
