MGE detailed information
MGE type: Genomic_island MGE length: 113061 bp
Accession: NZ_CP055179 Location: 4162793..4275853 Organism: Shigella flexneri strain STEFF_18 Replicon: chromosome
Accession: NZ_CP055179 Location: 4162793..4275853 Organism: Shigella flexneri strain STEFF_18 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUZ46_RS19995 (4158112) | 4158112..4159014 | - | 903 | WP_000832227.1 | type 1 fimbria D-mannose specific adhesin FimH | - |
| HUZ46_RS20000 (4159034) | 4159034..4159537 | - | 504 | WP_063625335.1 | type 1 fimbria minor subunit FimG | - |
| HUZ46_RS20005 (4159550) | 4159550..4160080 | - | 531 | WP_001469032.1 | type 1 fimbria minor subunit FimF | - |
| HUZ46_RS20010 (4160090) | 4160090..4162726 | - | 2637 | WP_063625336.1 | fimbrial usher FimD | - |
| HUZ46_RS20015 (4162793) | 4162793..4163518 | - | 726 | WP_063625337.1 | Chaperone protein FimC | VF |
| HUZ46_RS20020 (4163555) | 4163555..4164094 | - | 540 | WP_000824119.1 | putative major fimbrial subunit LpfA | VF |
| HUZ46_RS20025 (4164159) | 4164159..4164707 | - | 549 | WP_000695543.1 | Fimbrial subunit type 1 | VF |
| HUZ46_RS20030 (4165188) | 4165188..4165784 | - | 597 | WP_000044711.1 | Tyrosine recombinase XerD | VF |
| HUZ46_RS20035 (4166262) | 4166262..4166864 | - | 603 | WP_000790583.1 | Tyrosine recombinase XerC | VF |
| HUZ46_RS20040 (4168316) | 4168316..4169032 | + | 717 | WP_001295734.1 | N-acetylneuraminic acid outer membrane channel NanC | - |
| HUZ46_RS20045 (4169052) | 4169052..4170158 | + | 1107 | WP_063625156.1 | N-acetylneuraminate epimerase | - |
| HUZ46_RS20050 (4170223) | 4170223..4171203 | + | 981 | WP_063625155.1 | sialate O-acetylesterase | - |
| HUZ46_RS20055 (4171211) | 4171211..4171315 | - | 105 | Protein_3935 | HNH endonuclease | - |
| HUZ46_RS20060 (4171415) | 4171415..4172287 | + | 873 | WP_063625154.1 | HNH endonuclease | - |
| HUZ46_RS20065 (4172332) | 4172332..4172511 | + | 180 | Protein_3937 | peptidase | - |
| HUZ46_RS20070 (4172910) | 4172910..4174946 | - | 2037 | WP_239612939.1 | hypothetical protein | - |
| HUZ46_RS20075 (4175902) | 4175902..4176045 | - | 144 | Protein_3939 | hypothetical protein | - |
| HUZ46_RS20080 (4176130) | 4176130..4176327 | - | 198 | WP_001327226.1 | DUF957 domain-containing protein | - |
| HUZ46_RS20085 (4176347) | 4176347..4176835 | - | 489 | WP_000761685.1 | DUF5983 family protein | - |
| HUZ46_RS20090 (4176832) | 4176832..4177209 | - | 378 | WP_072649755.1 | TA system toxin CbtA family protein | Toxin Detail |
| HUZ46_RS20095 (4177299) | 4177299..4177667 | - | 369 | WP_001285607.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| HUZ46_RS20100 (4177747) | 4177747..4177968 | - | 222 | WP_000692350.1 | DUF987 domain-containing protein | - |
| HUZ46_RS20105 (4178055) | 4178055..4178531 | - | 477 | WP_001384029.1 | RadC family protein | - |
| HUZ46_RS20110 (4178546) | 4178546..4179031 | - | 486 | WP_000213722.1 | antirestriction protein | - |
| HUZ46_RS20115 (4179123) | 4179123..4179941 | - | 819 | WP_001175175.1 | DUF932 domain-containing protein | - |
| HUZ46_RS20120 (4180031) | 4180031..4180240 | - | 210 | WP_032150870.1 | DUF905 family protein | - |
| HUZ46_RS20125 (4180270) | 4180270..4180947 | - | 678 | WP_001097301.1 | hypothetical protein | - |
| HUZ46_RS20130 (4181095) | 4181095..4181775 | - | 681 | WP_001282919.1 | WYL domain-containing protein | - |
| HUZ46_RS20135 (4181978) | 4181978..4182862 | - | 885 | WP_000010408.1 | 50S ribosome-binding GTPase | - |
| HUZ46_RS20140 (4183047) | 4183047..4184177 | + | 1131 | WP_072660960.1 | hypothetical protein | - |
| HUZ46_RS20145 (4185658) | 4185658..4186389 | + | 732 | WP_001075464.1 | inovirus Gp2 family protein | - |
| HUZ46_RS20150 (4186717) | 4186717..4187595 | + | 879 | WP_000769116.1 | restriction endonuclease | - |
| HUZ46_RS20155 (4187649) | 4187649..4188223 | + | 575 | Protein_3955 | transposase | - |
| HUZ46_RS20160 (4188356) | 4188356..4189131 | - | 776 | Protein_3956 | transposase | - |
| HUZ46_RS20165 (4189532) | 4189532..4190760 | + | 1229 | WP_089541817.1 | IS3 family transposase IS2 | Transposase |
| HUZ46_RS20170 (4190784) | 4190784..4191128 | + | 345 | WP_261785235.1 | H-NS family nucleoid-associated regulatory protein | - |
| HUZ46_RS20175 (4191397) | 4191397..4191525 | + | 129 | Protein_3959 | IS256 family transposase | - |
| HUZ46_RS20180 (4191555) | 4191555..4191904 | - | 350 | Protein_3960 | IS21 family transposase | - |
| HUZ46_RS20185 (4192937) | 4192937..4193503 | + | 567 | WP_053899658.1 | inovirus-type Gp2 protein | - |
| HUZ46_RS20190 (4193623) | 4193623..4193772 | - | 150 | WP_001421645.1 | hypothetical protein | - |
| HUZ46_RS20195 (4193787) | 4193787..4194359 | + | 573 | WP_032153703.1 | hypothetical protein | - |
| HUZ46_RS20200 (4194428) | 4194428..4194664 | + | 237 | WP_000958154.1 | AlpA family transcriptional regulator | - |
| HUZ46_RS20205 (4194957) | 4194957..4195133 | - | 177 | WP_001376097.1 | hypothetical protein | - |
| HUZ46_RS20210 (4195216) | 4195216..4195404 | - | 189 | WP_223603649.1 | hypothetical protein | - |
| HUZ46_RS20215 (4195500) | 4195500..4195748 | - | 249 | WP_001349534.1 | ProQ/FINO family protein | - |
| HUZ46_RS20220 (4195817) | 4195817..4196008 | - | 192 | WP_001323513.1 | hypothetical protein | - |
| HUZ46_RS24360 (4196411) | 4196411..4197102 | - | 692 | Protein_3969 | IS1 family transposase | - |
| HUZ46_RS20240 (4197162) | 4197162..4197338 | + | 177 | Protein_3970 | transketolase family protein | - |
| HUZ46_RS20245 (4197592) | 4197592..4197705 | + | 114 | Protein_3971 | transposase | - |
| HUZ46_RS20250 (4198565) | 4198565..4199131 | + | 567 | WP_000919994.1 | hypothetical protein | - |
| HUZ46_RS20255 (4199372) | 4199372..4200187 | + | 816 | WP_001043260.1 | Dihydropteroate synthase | ARG |
| HUZ46_RS20260 (4200248) | 4200248..4201051 | + | 804 | WP_001082320.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| HUZ46_RS20265 (4201051) | 4201051..4201887 | + | 837 | WP_000480968.1 | hypothetical protein | ARG |
| HUZ46_RS20270 (4202193) | 4202193..4202435 | + | 243 | WP_000844627.1 | transposase | - |
| HUZ46_RS20275 (4202467) | 4202467..4203117 | - | 651 | WP_001493764.1 | tetracycline resistance transcriptional repressor TetR(A) | - |
| HUZ46_RS20280 (4203223) | 4203223..4204422 | + | 1200 | WP_032153701.1 | Tetracycline resistance protein, class C | ARG |
| HUZ46_RS20285 (4204389) | 4204389..4204577 | - | 189 | Protein_3979 | IS91 family transposase | - |
| HUZ46_RS20290 (4204689) | 4204689..4204994 | - | 306 | WP_001255015.1 | HTH-type transcriptional regulator CynR | VF |
| HUZ46_RS20295 (4205022) | 4205022..4206236 | - | 1215 | WP_023300759.1 | Bicyclomycin resistance protein | ARG |
| HUZ46_RS20300 (4206453) | 4206453..4207337 | - | 885 | WP_021598067.1 | DUF3363 domain-containing protein | - |
| HUZ46_RS20305 (4207368) | 4207368..4208024 | - | 657 | Protein_3983 | IS91-like element ISVsa3 family transposase | - |
| HUZ46_RS20310 (4207958) | 4207958..4208236 | - | 279 | WP_001349530.1 | P fimbrial regulatory protein KS71A | VF |
| HUZ46_RS20315 (4208668) | 4208668..4208982 | + | 315 | WP_000930062.1 | Major pilu subunit operon regulatory protein PapB | VF |
| HUZ46_RS20320 (4209189) | 4209189..4209452 | + | 264 | Protein_3986 | Pap fimbrial major pilin protein | VF |
| HUZ46_RS20325 (4209903) | 4209903..4211135 | - | 1233 | WP_000271619.1 | dNTP triphosphohydrolase | - |
| HUZ46_RS20330 (4211286) | 4211286..4212447 | - | 1162 | Protein_3988 | IS3 family transposase IS3 | Transposase |
| HUZ46_RS20335 (4212615) | 4212615..4213595 | + | 981 | WP_000174035.1 | thymidylate synthase | - |
| HUZ46_RS20340 (4213592) | 4213592..4214536 | + | 945 | WP_000820616.1 | hypothetical protein | - |
| HUZ46_RS20345 (4214539) | 4214539..4215621 | - | 1083 | WP_000637419.1 | XRE family transcriptional regulator | - |
| HUZ46_RS20350 (4216088) | 4216088..4216354 | + | 267 | WP_032153698.1 | MazG-like family protein | - |
| HUZ46_RS20355 (4216654) | 4216654..4217168 | - | 515 | Protein_3993 | ISL3 family transposase ISEc38 | Transposase |
| HUZ46_RS20360 (4217776) | 4217776..4221189 | + | 3414 | WP_000438165.1 | DEAD/DEAH box helicase family protein | - |
| HUZ46_RS20365 (4221253) | 4221253..4222887 | + | 1635 | WP_000627728.1 | class I SAM-dependent DNA methyltransferase | - |
| HUZ46_RS20370 (4222884) | 4222884..4224026 | + | 1143 | WP_000742120.1 | restriction endonuclease subunit S | - |
| HUZ46_RS20375 (4224035) | 4224035..4225657 | + | 1623 | WP_000778955.1 | AAA family ATPase | - |
| HUZ46_RS20380 (4225657) | 4225657..4226553 | + | 897 | WP_000499115.1 | hypothetical protein | - |
| HUZ46_RS20385 (4226776) | 4226776..4226954 | - | 179 | Protein_3999 | integrase | - |
| HUZ46_RS20390 (4227184) | 4227184..4227921 | + | 738 | WP_001398114.1 | OmpW family outer membrane protein | - |
| HUZ46_RS20395 (4228341) | 4228341..4229237 | + | 897 | WP_000228490.1 | WYL domain-containing protein | - |
| HUZ46_RS20400 (4229286) | 4229286..4230365 | + | 1080 | WP_001207396.1 | hypothetical protein | - |
| HUZ46_RS20405 (4230412) | 4230412..4231983 | + | 1572 | WP_001100182.1 | ATP--cob(I)alamin adenosyltransferase | - |
| HUZ46_RS20410 (4231980) | 4231980..4232246 | + | 267 | WP_000766274.1 | YkgJ family cysteine cluster protein | - |
| HUZ46_RS20415 (4232386) | 4232386..4232583 | + | 198 | WP_001238004.1 | hypothetical protein | - |
| HUZ46_RS20420 (4232636) | 4232636..4234309 | + | 1674 | WP_025492097.1 | sulfatase-like hydrolase/transferase | - |
| HUZ46_RS20425 (4234453) | 4234453..4235487 | - | 1035 | WP_032153697.1 | tetratricopeptide repeat family protein | - |
| HUZ46_RS20430 (4235537) | 4235537..4236234 | + | 698 | WP_094096600.1 | IS1 family transposase IS1A | Transposase |
| HUZ46_RS20435 (4236256) | 4236256..4239753 | - | 3498 | WP_001360336.1 | Outer membrane protein IcsA autotransporter | VF |
| HUZ46_RS20440 (4240338) | 4240338..4240583 | - | 246 | Protein_4010 | IS91 family transposase | - |
| HUZ46_RS20445 (4240645) | 4240645..4241880 | - | 1236 | Protein_4011 | IS3 family transposase ISKpn38 | Transposase |
| HUZ46_RS20450 (4241966) | 4241966..4242160 | + | 195 | Protein_4012 | IS66 family transposase ISEc23 | Transposase |
| HUZ46_RS20455 (4242256) | 4242256..4243533 | - | 1278 | WP_000610829.1 | ISL3 family transposase ISPst2 | Transposase |
| HUZ46_RS20460 (4243546) | 4243546..4244580 | - | 1035 | WP_029396327.1 | permease | - |
| HUZ46_RS20465 (4244692) | 4244692..4245006 | + | 315 | WP_000349485.1 | helix-turn-helix domain-containing protein | - |
| HUZ46_RS20470 (4245277) | 4245277..4245384 | + | 108 | Protein_4016 | IS66 family insertion sequence element accessory protein TnpB | - |
| HUZ46_RS20475 (4245381) | 4245381..4245731 | + | 351 | WP_000624717.1 | IS66 family transposase IS682 | Transposase |
| HUZ46_RS20480 (4245762) | 4245762..4247132 | + | 1371 | Protein_4018 | IS66 family transposase ISEc23 | Transposase |
| HUZ46_RS20485 (4247259) | 4247259..4247783 | + | 525 | WP_000823671.1 | Superoxide dismutase [Cu-Zn] 1 | VF |
| HUZ46_RS20490 (4247912) | 4247912..4248136 | - | 225 | WP_024210520.1 | hypothetical protein | - |
| HUZ46_RS20495 (4249062) | 4249062..4249903 | + | 842 | Protein_4021 | hypothetical protein | - |
| HUZ46_RS20500 (4250378) | 4250378..4250992 | - | 615 | Protein_4022 | putative HTH-type transcriptional regulator YahB | VF |
| HUZ46_RS20505 (4251043) | 4251043..4252256 | + | 1214 | WP_162842841.1 | IS3 family transposase IS629 | Transposase |
| HUZ46_RS20510 (4252289) | 4252289..4252501 | + | 213 | Protein_4024 | transposase | - |
| HUZ46_RS20515 (4252669) | 4252669..4252812 | - | 144 | WP_001767846.1 | hypothetical protein | - |
| HUZ46_RS20520 (4252848) | 4252848..4255535 | - | 2688 | WP_072660900.1 | autotransporter domain-containing protein | - |
| HUZ46_RS20525 (4255523) | 4255523..4255753 | - | 231 | WP_072649682.1 | ProQ/FINO family protein | - |
| HUZ46_RS20530 (4255750) | 4255750..4255923 | - | 174 | WP_000258195.1 | hypothetical protein | - |
| HUZ46_RS20535 (4256386) | 4256386..4257471 | + | 1086 | WP_000179014.1 | DNA sulfur modification protein DndB | - |
| HUZ46_RS20540 (4257468) | 4257468..4259102 | + | 1635 | WP_000041168.1 | DNA phosphorothioation system sulfurtransferase DndC | - |
| HUZ46_RS20545 (4259092) | 4259092..4261092 | + | 2001 | WP_000905896.1 | DNA sulfur modification protein DndD | - |
| HUZ46_RS20550 (4261092) | 4261092..4261448 | + | 357 | WP_000937304.1 | DNA sulfur modification protein DndE | - |
| HUZ46_RS20555 (4261507) | 4261507..4262262 | - | 756 | WP_071992076.1 | DGQHR domain-containing protein | - |
| HUZ46_RS20560 (4262362) | 4262362..4262667 | - | 306 | WP_000071509.1 | DNA sulfur modification protein DndB | - |
| HUZ46_RS20565 (4262668) | 4262668..4263186 | - | 519 | WP_001327223.1 | accessory gene regulator B family protein | - |
| HUZ46_RS20570 (4263224) | 4263224..4268278 | - | 5055 | WP_072660899.1 | DNA phosphorothioation-dependent restriction protein DptH | - |
| HUZ46_RS20575 (4268259) | 4268259..4269584 | - | 1326 | WP_000283233.1 | DNA phosphorothioation-dependent restriction protein DptG | - |
| HUZ46_RS20580 (4269589) | 4269589..4271238 | - | 1650 | WP_001274542.1 | DNA phosphorothioation-dependent restriction protein DptF | - |
| HUZ46_RS20585 (4271462) | 4271462..4271627 | - | 166 | Protein_4039 | integrase | - |
| HUZ46_RS20590 (4271851) | 4271851..4272591 | + | 741 | WP_001477155.1 | outer membrane beta-barrel protein | - |
| HUZ46_RS20595 (4272765) | 4272765..4274264 | + | 1500 | WP_024166268.1 | phosphoethanolamine transferase | - |
| HUZ46_RS20600 (4274588) | 4274588..4275853 | - | 1266 | WP_001218930.1 | Prophage integrase IntA ; Integrase | Integrase |
| HUZ46_RS20610 (4276320) | 4276320..4277339 | + | 1020 | WP_001314371.1 | NADPH-dependent aldehyde reductase Ahr | - |
| HUZ46_RS20615 (4277343) | 4277343..4277906 | - | 564 | WP_063625413.1 | gluconokinase | - |
| HUZ46_RS20620 (4278123) | 4278123..4279154 | + | 1032 | WP_062876287.1 | L-idonate 5-dehydrogenase | - |
| HUZ46_RS20625 (4279178) | 4279178..4279942 | + | 765 | WP_063625412.1 | gluconate 5-dehydrogenase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|