MGE detailed information
MGE type: Genomic_island MGE length: 34564 bp
Accession: NZ_CP055170 Location: 272669..307232 Organism: Shigella flexneri strain STEFF_22 Replicon: chromosome
Accession: NZ_CP055170 Location: 272669..307232 Organism: Shigella flexneri strain STEFF_22 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUZ49_RS01240 (267851) | 267851..269191 | - | 1341 | WP_000899522.1 | anaerobic C4-dicarboxylate transporter DcuB | - |
| HUZ49_RS01245 (269762) | 269762..270481 | - | 720 | WP_000611288.1 | two-component system response regulator DcuR | - |
| HUZ49_RS01250 (270478) | 270478..272109 | - | 1632 | WP_001216489.1 | sensor histidine kinase | - |
| HUZ49_RS01255 (272238) | 272238..272989 | - | 752 | Protein_240 | IS3 family transposase | - |
| HUZ49_RS01260 (273392) | 273392..273964 | + | 573 | WP_000661408.1 | hypothetical protein | - |
| HUZ49_RS01265 (274161) | 274161..275273 | - | 1113 | WP_001300563.1 | IS4 family transposase IS421 | Transposase |
| HUZ49_RS01270 (275352) | 275352..276572 | + | 1221 | WP_239591985.1 | HlyD family efflux transporter periplasmic adaptor subunit | - |
| HUZ49_RS01275 (276565) | 276565..278727 | + | 2163 | WP_001395681.1 | peptidase domain-containing ABC transporter | - |
| HUZ49_RS01280 (278857) | 278857..279585 | - | 729 | Protein_245 | helix-turn-helix domain-containing protein | - |
| HUZ49_RS01285 (279665) | 279665..280183 | - | 519 | WP_000565927.1 | hypothetical protein | - |
| HUZ49_RS01290 (280176) | 280176..280697 | - | 522 | WP_001542589.1 | hypothetical protein | VF |
| HUZ49_RS01295 (280711) | 280711..281706 | - | 996 | WP_001395679.1 | hypothetical protein | - |
| HUZ49_RS01300 (281726) | 281726..282427 | - | 702 | WP_000162908.1 | Chaperone protein FaeE | VF |
| HUZ49_RS01305 (282420) | 282420..284777 | - | 2358 | WP_000695774.1 | Outer membrane usher protein YraJ | VF |
| HUZ49_RS01315 (285707) | 285707..286156 | - | 450 | WP_239591986.1 | hypothetical protein | VF |
| HUZ49_RS01320 (286506) | 286506..290342 | + | 3837 | WP_001033999.1 | Temperature-sensitive hemagglutinin tsh autotransporter | VF |
| HUZ49_RS01325 (291249) | 291249..292079 | + | 831 | WP_001088100.1 | AraC family transcriptional regulator | - |
| HUZ49_RS01330 (293240) | 293240..297169 | + | 3930 | WP_046201569.1 | Serine protease EspC | VF |
| HUZ49_RS01335 (297382) | 297382..297654 | + | 273 | WP_000405647.1 | GNAT family N-acetyltransferase | - |
| HUZ49_RS01340 (297881) | 297881..298177 | + | 297 | WP_071988580.1 | type V toxin-antitoxin system endoribonuclease antitoxin GhoS | Antitoxin Detail |
| HUZ49_RS01345 (298205) | 298205..298378 | + | 174 | WP_001173343.1 | type V toxin-antitoxin system toxin GhoT | Toxin Detail |
| HUZ49_RS01350 (298497) | 298497..300014 | - | 1518 | WP_001295087.1 | lysine--tRNA ligase | - |
| HUZ49_RS01355 (300251) | 300251..301708 | - | 1458 | WP_000856829.1 | dipeptide/tripeptide permease DtpC | - |
| HUZ49_RS01360 (301767) | 301767..303914 | - | 2148 | WP_001100642.1 | lysine decarboxylase CadA | - |
| HUZ49_RS01365 (303994) | 303994..305328 | - | 1335 | WP_000092909.1 | cadaverine/lysine antiporter | - |
| HUZ49_RS01370 (305694) | 305694..307232 | - | 1539 | WP_001187170.1 | lysine decarboxylation/transport transcriptional activator CadC | - |
| HUZ49_RS01380 (308031) | 308031..308606 | - | 576 | WP_001188520.1 | transcriptional regulator | - |
| HUZ49_RS01385 (308643) | 308643..310340 | - | 1698 | WP_000068978.1 | protein-disulfide reductase DsbD | - |
| HUZ49_RS01390 (310316) | 310316..310654 | - | 339 | WP_000883400.1 | divalent cation tolerance protein CutA | - |
| HUZ49_RS01395 (310770) | 310770..312071 | - | 1302 | WP_000961959.1 | anaerobic C4-dicarboxylate transporter DcuA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|