MGE detailed information
MGE type: Genomic_island MGE length: 64333 bp
Accession: NZ_CP055113 Location: 3933116..3997448 Organism: Shigella flexneri strain SWHIN_101 Replicon: chromosome
Accession: NZ_CP055113 Location: 3933116..3997448 Organism: Shigella flexneri strain SWHIN_101 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUZ81_RS19015 (3929397) | 3929397..3931079 | + | 1683 | WP_190996196.1 | glycolate permease GlcA | - |
| HUZ81_RS19020 (3931565) | 3931565..3932698 | + | 1134 | Protein_3714 | Accessory colonization factor AcfD | - |
| HUZ81_RS19025 (3933116) | 3933116..3933442 | - | 327 | WP_000779483.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| HUZ81_RS19030 (3933439) | 3933439..3933702 | - | 264 | WP_001143297.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| HUZ81_RS19035 (3933774) | 3933774..3934640 | - | 867 | WP_001280433.1 | DUF4942 domain-containing protein | - |
| HUZ81_RS19040 (3934725) | 3934725..3934922 | - | 198 | WP_000839291.1 | DUF957 domain-containing protein | - |
| HUZ81_RS19045 (3934934) | 3934934..3935422 | - | 489 | WP_000761677.1 | DUF5983 family protein | - |
| HUZ81_RS19050 (3935419) | 3935419..3935796 | - | 378 | WP_000854735.1 | TA system toxin CbtA family protein | Toxin Detail |
| HUZ81_RS19055 (3935843) | 3935843..3936217 | - | 375 | WP_001285415.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| HUZ81_RS19060 (3936297) | 3936297..3936518 | - | 222 | WP_000692309.1 | DUF987 domain-containing protein | - |
| HUZ81_RS19065 (3936581) | 3936581..3937057 | - | 477 | WP_001366855.1 | RadC family protein | - |
| HUZ81_RS19070 (3937073) | 3937073..3937552 | - | 480 | WP_000844100.1 | antirestriction protein | - |
| HUZ81_RS19075 (3937634) | 3937634..3938452 | - | 819 | WP_001175148.1 | DUF932 domain-containing protein | - |
| HUZ81_RS19080 (3938542) | 3938542..3938775 | - | 234 | WP_001278287.1 | DUF905 family protein | - |
| HUZ81_RS19085 (3938781) | 3938781..3939458 | - | 678 | WP_001097302.1 | hypothetical protein | - |
| HUZ81_RS19090 (3939606) | 3939606..3940286 | - | 681 | WP_001282919.1 | WYL domain-containing protein | - |
| HUZ81_RS19095 (3940489) | 3940489..3941373 | - | 885 | WP_000010402.1 | 50S ribosome-binding GTPase | - |
| HUZ81_RS19100 (3941558) | 3941558..3942688 | + | 1131 | WP_000147748.1 | hypothetical protein | - |
| HUZ81_RS19105 (3944247) | 3944247..3944978 | + | 732 | WP_190996200.1 | inovirus Gp2 family protein | - |
| HUZ81_RS19110 (3945121) | 3945121..3945510 | + | 390 | WP_226194604.1 | hypothetical protein | - |
| HUZ81_RS19115 (3945522) | 3945522..3945728 | - | 207 | WP_025492114.1 | hypothetical protein | - |
| HUZ81_RS19120 (3946162) | 3946162..3947766 | + | 1605 | WP_001696533.1 | YfjI family protein | - |
| HUZ81_RS19125 (3949331) | 3949331..3949897 | + | 567 | WP_001696532.1 | inovirus-type Gp2 protein | - |
| HUZ81_RS19130 (3950144) | 3950144..3950719 | + | 576 | WP_000991584.1 | hypothetical protein | - |
| HUZ81_RS19135 (3950788) | 3950788..3951036 | + | 249 | WP_001696531.1 | AlpA family transcriptional regulator | - |
| HUZ81_RS19140 (3951287) | 3951287..3951925 | - | 639 | WP_190996202.1 | RpiB/LacA/LacB family sugar-phosphate isomerase | - |
| HUZ81_RS19145 (3952198) | 3952198..3953352 | + | 1155 | WP_032297239.1 | oligogalacturonate lyase family protein | - |
| HUZ81_RS19150 (3953382) | 3953382..3954182 | + | 801 | WP_000345753.1 | hypothetical protein | VF |
| HUZ81_RS19155 (3954237) | 3954237..3954560 | + | 324 | WP_001696527.1 | cupin domain-containing protein | - |
| HUZ81_RS19165 (3956232) | 3956232..3956606 | + | 375 | Protein_3743 | integrase core domain-containing protein | - |
| HUZ81_RS19170 (3957118) | 3957118..3957906 | + | 789 | WP_001696174.1 | DeoR family transcriptional regulator | - |
| HUZ81_RS19175 (3958024) | 3958024..3958497 | + | 474 | WP_001696173.1 | PTS sugar transporter subunit IIB | - |
| HUZ81_RS19180 (3958516) | 3958516..3959286 | + | 771 | WP_001696172.1 | PTS N-acetylgalactosamine transporter subunit IIC | - |
| HUZ81_RS19185 (3959276) | 3959276..3960142 | + | 867 | WP_001767853.1 | PTS system mannose/fructose/sorbose family transporter subunit IID | - |
| HUZ81_RS19190 (3960152) | 3960152..3960589 | + | 438 | WP_001696170.1 | PTS galactosamine/N-acetylgalactosamine transporter subunit IIA | - |
| HUZ81_RS19195 (3960670) | 3960670..3961704 | + | 1035 | WP_001696169.1 | glycoside hydrolase family 88 protein | - |
| HUZ81_RS19200 (3961738) | 3961738..3963195 | + | 1458 | WP_077250607.1 | DUF2264 domain-containing protein | - |
| HUZ81_RS19205 (3963240) | 3963240..3964244 | + | 1005 | WP_024210506.1 | hypothetical protein | - |
| HUZ81_RS19210 (3964263) | 3964263..3966662 | + | 2400 | WP_024210505.1 | hypothetical protein | VF |
| HUZ81_RS19215 (3966672) | 3966672..3969359 | + | 2688 | WP_001696166.1 | autotransporter domain-containing protein | - |
| HUZ81_RS19220 (3969395) | 3969395..3969538 | + | 144 | WP_001767846.1 | hypothetical protein | - |
| HUZ81_RS19225 (3969706) | 3969706..3969918 | - | 213 | Protein_3755 | transposase | - |
| HUZ81_RS19235 (3971215) | 3971215..3971829 | + | 615 | Protein_3757 | hypothetical protein | VF |
| HUZ81_RS19240 (3972304) | 3972304..3973145 | - | 842 | Protein_3758 | hypothetical protein | - |
| HUZ81_RS19245 (3974071) | 3974071..3974295 | + | 225 | WP_024210520.1 | hypothetical protein | - |
| HUZ81_RS19250 (3974424) | 3974424..3974948 | - | 525 | WP_000823671.1 | hypothetical protein | VF |
| HUZ81_RS19255 (3975044) | 3975044..3976105 | - | 1062 | WP_001696570.1 | extracellular solute-binding protein | - |
| HUZ81_RS19260 (3976178) | 3976178..3977458 | + | 1281 | WP_000350192.1 | class I SAM-dependent DNA methyltransferase | - |
| HUZ81_RS19265 (3977451) | 3977451..3978683 | + | 1233 | WP_000063698.1 | restriction endonuclease subunit S | - |
| HUZ81_RS19270 (3978924) | 3978924..3979025 | - | 102 | Protein_3764 | transposase domain-containing protein | - |
| HUZ81_RS25480 (3979389) | 3979389..3979520 | - | 132 | WP_000139282.1 | hypothetical protein | - |
| HUZ81_RS19275 (3979745) | 3979745..3980665 | + | 921 | WP_000107666.1 | aminoimidazole riboside kinase | - |
| HUZ81_RS19280 (3980833) | 3980833..3982350 | + | 1518 | WP_000277213.1 | carbohydrate porin | - |
| HUZ81_RS19285 (3982411) | 3982411..3983781 | + | 1371 | WP_000344909.1 | sucrose-specific PTS transporter subunit IIBC | - |
| HUZ81_RS19290 (3983781) | 3983781..3985190 | + | 1410 | WP_001324288.1 | sucrose-6-phosphate hydrolase | - |
| HUZ81_RS19295 (3985216) | 3985216..3986223 | + | 1008 | WP_001232703.1 | LacI family DNA-binding transcriptional regulator | - |
| HUZ81_RS19300 (3986775) | 3986775..3987249 | - | 475 | Protein_3771 | H-NS family nucleoid-associated regulatory protein | - |
| HUZ81_RS19305 (3987568) | 3987568..3988125 | + | 558 | Protein_3772 | outer membrane beta-barrel protein | - |
| HUZ81_RS19310 (3988180) | 3988180..3988877 | + | 698 | WP_094096600.1 | IS1 family transposase IS1A | Transposase |
| HUZ81_RS19315 (3988897) | 3988897..3989082 | + | 186 | Protein_3774 | outer membrane beta-barrel protein | - |
| HUZ81_RS19320 (3989503) | 3989503..3990399 | + | 897 | WP_001696574.1 | WYL domain-containing protein | - |
| HUZ81_RS19325 (3990448) | 3990448..3991527 | + | 1080 | WP_001696575.1 | hypothetical protein | - |
| HUZ81_RS19330 (3991574) | 3991574..3993145 | + | 1572 | WP_001696576.1 | hypothetical protein | - |
| HUZ81_RS19335 (3993142) | 3993142..3993408 | + | 267 | WP_000766272.1 | YkgJ family cysteine cluster protein | - |
| HUZ81_RS25485 (3993548) | 3993548..3993676 | + | 129 | WP_263971993.1 | hypothetical protein | - |
| HUZ81_RS19340 (3993705) | 3993705..3994402 | + | 698 | WP_095033700.1 | IS1 family transposase IS1R | Transposase |
| HUZ81_RS19345 (3994588) | 3994588..3996261 | + | 1674 | WP_239622584.1 | sulfatase-like hydrolase/transferase | - |
| HUZ81_RS19350 (3996405) | 3996405..3997448 | - | 1044 | WP_000999870.1 | hypothetical protein | - |
| HUZ81_RS19355 (3997882) | 3997882..3999072 | - | 1191 | WP_001218741.1 | tyrosine-type recombinase/integrase | - |
| HUZ81_RS19365 (3999430) | 3999430..4000137 | - | 708 | WP_000234522.1 | DUF554 domain-containing protein | - |
| HUZ81_RS19370 (4000290) | 4000290..4000373 | + | 84 | WP_212591416.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|