MGE detailed information
MGE type: Genomic_island MGE length: 80922 bp
Accession: NZ_CP055113 Location: 2621518..2702439 Organism: Shigella flexneri strain SWHIN_101 Replicon: chromosome
Accession: NZ_CP055113 Location: 2621518..2702439 Organism: Shigella flexneri strain SWHIN_101 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUZ81_RS12745 (2616889) | 2616889..2618073 | + | 1185 | WP_001218742.1 | tyrosine-type recombinase/integrase | - |
| HUZ81_RS12750 (2618223) | 2618223..2619233 | + | 1011 | WP_000053331.1 | substrate-binding domain-containing protein | - |
| HUZ81_RS12755 (2619329) | 2619329..2621455 | + | 2127 | WP_000253907.1 | alpha-galactosidase | - |
| HUZ81_RS12760 (2621518) | 2621518..2622795 | + | 1278 | WP_001083368.1 | MFS transporter | - |
| HUZ81_RS12765 (2622795) | 2622795..2624225 | + | 1431 | WP_000813678.1 | glycoside hydrolase family 32 protein | - |
| HUZ81_RS12770 (2624420) | 2624420..2625814 | + | 1395 | WP_001037798.1 | carbohydrate porin | - |
| HUZ81_RS12775 (2626392) | 2626392..2626679 | - | 288 | Protein_2507 | integrase core domain-containing protein | - |
| HUZ81_RS12780 (2626668) | 2626668..2627029 | - | 362 | Protein_2508 | IS1 family transposase IS1A | Transposase |
| HUZ81_RS12785 (2627079) | 2627079..2628113 | + | 1035 | WP_032153697.1 | tetratricopeptide repeat family protein | - |
| HUZ81_RS12790 (2628257) | 2628257..2629930 | - | 1674 | WP_151577585.1 | sulfatase-like hydrolase/transferase | - |
| HUZ81_RS12795 (2629983) | 2629983..2630180 | - | 198 | WP_001238004.1 | hypothetical protein | - |
| HUZ81_RS12800 (2630320) | 2630320..2630586 | - | 267 | WP_000766274.1 | YkgJ family cysteine cluster protein | - |
| HUZ81_RS12805 (2630583) | 2630583..2632154 | - | 1572 | WP_001100182.1 | ATP--cob(I)alamin adenosyltransferase | - |
| HUZ81_RS12810 (2632201) | 2632201..2633280 | - | 1080 | WP_001207396.1 | hypothetical protein | - |
| HUZ81_RS12815 (2633329) | 2633329..2634225 | - | 897 | WP_000228490.1 | WYL domain-containing protein | - |
| HUZ81_RS12820 (2634645) | 2634645..2635382 | - | 738 | WP_001398114.1 | OmpW family outer membrane protein | - |
| HUZ81_RS12825 (2635612) | 2635612..2635790 | + | 179 | Protein_2517 | integrase | - |
| HUZ81_RS12830 (2636013) | 2636013..2636909 | - | 897 | WP_000499115.1 | hypothetical protein | - |
| HUZ81_RS12835 (2636909) | 2636909..2638531 | - | 1623 | WP_000778955.1 | AAA family ATPase | - |
| HUZ81_RS12840 (2638540) | 2638540..2639682 | - | 1143 | WP_000742120.1 | restriction endonuclease subunit S | - |
| HUZ81_RS12845 (2639679) | 2639679..2641313 | - | 1635 | WP_000627728.1 | class I SAM-dependent DNA methyltransferase | - |
| HUZ81_RS12850 (2641377) | 2641377..2644790 | - | 3414 | WP_000438165.1 | DEAD/DEAH box helicase family protein | - |
| HUZ81_RS12855 (2645398) | 2645398..2645912 | + | 515 | Protein_2523 | ISL3 family transposase ISEc38 | Transposase |
| HUZ81_RS12860 (2646212) | 2646212..2646478 | - | 267 | WP_032153698.1 | MazG-like family protein | - |
| HUZ81_RS12865 (2647004) | 2647004..2648266 | + | 1263 | WP_000608644.1 | IS1380 family transposase ISEcp1 | Transposase |
| HUZ81_RS12870 (2648401) | 2648401..2649609 | + | 1209 | WP_001339197.1 | IS4 family transposase IS10R | Transposase |
| HUZ81_RS12875 (2649854) | 2649854..2650729 | + | 876 | WP_001617865.1 | hypothetical protein | ARG |
| HUZ81_RS12880 (2650764) | 2650764..2651732 | + | 969 | WP_013362812.1 | IS5 family transposase IS903B | Transposase |
| HUZ81_RS12885 (2651789) | 2651789..2652886 | + | 1098 | Protein_2529 | TonB-dependent receptor | - |
| HUZ81_RS12890 (2653150) | 2653150..2653314 | - | 165 | Protein_2530 | IS6 family transposase IS15DI | Transposase |
| HUZ81_RS12895 (2653447) | 2653447..2654529 | + | 1083 | WP_000637419.1 | XRE family transcriptional regulator | - |
| HUZ81_RS12900 (2654532) | 2654532..2655476 | - | 945 | WP_000820616.1 | hypothetical protein | - |
| HUZ81_RS12905 (2655473) | 2655473..2656453 | - | 981 | WP_000174035.1 | thymidylate synthase | - |
| HUZ81_RS12910 (2656621) | 2656621..2657782 | + | 1162 | Protein_2534 | IS3 family transposase IS3 | Transposase |
| HUZ81_RS12915 (2657933) | 2657933..2659165 | + | 1233 | WP_000271619.1 | dNTP triphosphohydrolase | - |
| HUZ81_RS12920 (2659616) | 2659616..2659879 | - | 264 | Protein_2536 | hypothetical protein | VF |
| HUZ81_RS12925 (2660086) | 2660086..2660400 | - | 315 | WP_000930062.1 | hypothetical protein | VF |
| HUZ81_RS12930 (2660823) | 2660823..2661101 | + | 279 | WP_001349530.1 | hypothetical protein | VF |
| HUZ81_RS12935 (2661035) | 2661035..2661691 | + | 657 | Protein_2539 | IS91-like element ISVsa3 family transposase | - |
| HUZ81_RS12940 (2661722) | 2661722..2662606 | + | 885 | WP_021598067.1 | DUF3363 domain-containing protein | - |
| HUZ81_RS12945 (2662823) | 2662823..2664037 | + | 1215 | WP_023300759.1 | hypothetical protein | ARG |
| HUZ81_RS12950 (2664065) | 2664065..2664370 | + | 306 | WP_001255015.1 | hypothetical protein | VF |
| HUZ81_RS12955 (2664482) | 2664482..2664670 | + | 189 | Protein_2543 | IS91 family transposase | - |
| HUZ81_RS12960 (2664637) | 2664637..2665836 | - | 1200 | WP_032153701.1 | hypothetical protein | ARG |
| HUZ81_RS12965 (2665942) | 2665942..2666592 | + | 651 | WP_001493764.1 | tetracycline resistance transcriptional repressor TetR(A) | - |
| HUZ81_RS12970 (2666624) | 2666624..2666866 | - | 243 | WP_000844627.1 | transposase | - |
| HUZ81_RS12975 (2667172) | 2667172..2668008 | - | 837 | WP_000480968.1 | hypothetical protein | ARG |
| HUZ81_RS12980 (2668008) | 2668008..2668811 | - | 804 | WP_001082319.1 | hypothetical protein | ARG |
| HUZ81_RS12985 (2668872) | 2668872..2669687 | - | 816 | WP_001043260.1 | hypothetical protein | ARG |
| HUZ81_RS12990 (2669928) | 2669928..2670494 | - | 567 | WP_000919994.1 | hypothetical protein | - |
| HUZ81_RS12995 (2671357) | 2671357..2671532 | - | 176 | Protein_2551 | transposase | - |
| HUZ81_RS13000 (2671721) | 2671721..2671897 | - | 177 | Protein_2552 | transketolase family protein | - |
| HUZ81_RS25465 (2671957) | 2671957..2672648 | + | 692 | Protein_2553 | IS1 family transposase | - |
| HUZ81_RS13020 (2673051) | 2673051..2673242 | + | 192 | WP_001323513.1 | hypothetical protein | - |
| HUZ81_RS13025 (2673311) | 2673311..2673559 | + | 249 | WP_001349534.1 | ProQ/FINO family protein | - |
| HUZ81_RS13030 (2673655) | 2673655..2673843 | + | 189 | WP_223603649.1 | hypothetical protein | - |
| HUZ81_RS13035 (2673926) | 2673926..2674102 | + | 177 | WP_001376097.1 | hypothetical protein | - |
| HUZ81_RS13040 (2674395) | 2674395..2674631 | - | 237 | WP_000958154.1 | AlpA family transcriptional regulator | - |
| HUZ81_RS13045 (2674700) | 2674700..2675272 | - | 573 | WP_032153703.1 | hypothetical protein | - |
| HUZ81_RS13050 (2675287) | 2675287..2675436 | + | 150 | WP_001421645.1 | hypothetical protein | - |
| HUZ81_RS13055 (2675556) | 2675556..2676122 | - | 567 | WP_032153705.1 | inovirus-type Gp2 protein | - |
| HUZ81_RS13060 (2677719) | 2677719..2679323 | - | 1605 | WP_001696533.1 | YfjI family protein | - |
| HUZ81_RS13065 (2679757) | 2679757..2679963 | + | 207 | WP_025492114.1 | hypothetical protein | - |
| HUZ81_RS13070 (2679975) | 2679975..2680235 | - | 261 | WP_223362175.1 | hypothetical protein | - |
| HUZ81_RS13075 (2680259) | 2680259..2680414 | + | 156 | WP_020923993.1 | hypothetical protein | - |
| HUZ81_RS13080 (2680508) | 2680508..2681239 | - | 732 | WP_032153707.1 | inovirus Gp2 family protein | - |
| HUZ81_RS13085 (2682990) | 2682990..2683799 | + | 810 | WP_032153709.1 | hypothetical protein | - |
| HUZ81_RS13090 (2683796) | 2683796..2684728 | - | 933 | WP_023155730.1 | hypothetical protein | - |
| HUZ81_RS13095 (2684835) | 2684835..2685719 | + | 885 | WP_024166630.1 | 50S ribosome-binding GTPase | - |
| HUZ81_RS13100 (2685838) | 2685838..2686515 | + | 678 | WP_023155728.1 | hypothetical protein | - |
| HUZ81_RS13105 (2686545) | 2686545..2686754 | + | 210 | WP_023155727.1 | DUF905 family protein | - |
| HUZ81_RS13110 (2686845) | 2686845..2687663 | + | 819 | WP_001234693.1 | DUF932 domain-containing protein | - |
| HUZ81_RS13115 (2687755) | 2687755..2688240 | + | 486 | WP_032153711.1 | antirestriction protein | - |
| HUZ81_RS13120 (2688256) | 2688256..2688732 | + | 477 | WP_001186715.1 | RadC family protein | - |
| HUZ81_RS13125 (2688801) | 2688801..2689022 | + | 222 | WP_000692345.1 | DUF987 domain-containing protein | - |
| HUZ81_RS13130 (2689102) | 2689102..2689476 | + | 375 | WP_032153712.1 | type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA | Antitoxin Detail |
| HUZ81_RS13135 (2689523) | 2689523..2689900 | + | 378 | WP_000854735.1 | TA system toxin CbtA family protein | Toxin Detail |
| HUZ81_RS13140 (2689897) | 2689897..2690388 | + | 492 | WP_023155722.1 | DUF5983 family protein | - |
| HUZ81_RS13145 (2690400) | 2690400..2690597 | + | 198 | WP_000839265.1 | DUF957 domain-containing protein | - |
| HUZ81_RS13150 (2690682) | 2690682..2691548 | + | 867 | WP_032153714.1 | DUF4942 domain-containing protein | - |
| HUZ81_RS13155 (2691620) | 2691620..2691883 | + | 264 | WP_215744564.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| HUZ81_RS13160 (2691880) | 2691880..2692206 | + | 327 | WP_000779483.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| HUZ81_RS13165 (2693089) | 2693089..2694626 | + | 1538 | Protein_2583 | lysine decarboxylation/transport transcriptional activator CadC | - |
| HUZ81_RS13170 (2694992) | 2694992..2696326 | + | 1335 | WP_000092909.1 | cadaverine/lysine antiporter | - |
| HUZ81_RS13175 (2696406) | 2696406..2698553 | + | 2148 | WP_239622555.1 | lysine decarboxylase CadA | - |
| HUZ81_RS13180 (2698612) | 2698612..2700069 | + | 1458 | WP_000856829.1 | dipeptide/tripeptide permease DtpC | - |
| HUZ81_RS13185 (2700306) | 2700306..2701823 | + | 1518 | WP_001295074.1 | lysine--tRNA ligase | - |
| HUZ81_RS13190 (2701942) | 2701942..2702115 | - | 174 | WP_001173343.1 | type V toxin-antitoxin system toxin GhoT | Toxin Detail |
| HUZ81_RS13195 (2702143) | 2702143..2702439 | - | 297 | WP_000398619.1 | type V toxin-antitoxin system endoribonuclease antitoxin GhoS | Antitoxin Detail |
| HUZ81_RS13200 (2702666) | 2702666..2702938 | - | 273 | WP_000405649.1 | GNAT family N-acetyltransferase | - |
| HUZ81_RS13205 (2702950) | 2702950..2703180 | - | 231 | WP_000371700.1 | 4Fe-4S mono-cluster protein YjdI | - |
| HUZ81_RS13210 (2703361) | 2703361..2704992 | + | 1632 | WP_001216487.1 | sensor histidine kinase | - |
| HUZ81_RS13215 (2704989) | 2704989..2705708 | + | 720 | WP_000611288.1 | two-component system response regulator DcuR | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|