NZ_CP0550381..140589

MGE detailed information

MGE type: Conjugative plasmid        MGE length: 140589 bp
Accession: NZ_CP055038        Location: 1..140589         Organism: Shigella flexneri strain SWHEFF_60       Replicon: plasmid unnamed1


Gene structure


The 5 kb flanking regions of this MGE are displayed.

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
HUZ72_RS22895 (HUZ72_22705) 19..894 + 876 WP_004098982.1 replication initiation protein -
HUZ72_RS22900 (HUZ72_22710) 1567..2193 + 627 WP_004197649.1 Chromosome-partitioning ATPase Soj VF
HUZ72_RS22905 2190..2492 + 303 WP_004197636.1 hypothetical protein -
HUZ72_RS22910 (HUZ72_22720) 2956..3750 - 795 WP_004197635.1 site-specific integrase -
HUZ72_RS22915 (HUZ72_22725) 3948..4964 - 1017 WP_017899884.1 hypothetical protein -
HUZ72_RS22920 (HUZ72_22730) 4975..5289 - 315 WP_053389906.1 hypothetical protein -
HUZ72_RS22925 (HUZ72_22735) 5316..5711 - 396 WP_017899885.1 hypothetical protein -
HUZ72_RS22930 (HUZ72_22740) 5880..6185 - 306 WP_013023785.1 type II toxin-antitoxin system toxin CcdB Toxin Detail
HUZ72_RS22935 (HUZ72_22745) 6187..6405 - 219 WP_001568025.1 type II toxin-antitoxin system antitoxin CcdA Antitoxin Detail
HUZ72_RS22940 (HUZ72_22750) 7223..7513 - 291 WP_013023783.1 hypothetical protein -
HUZ72_RS22945 (HUZ72_22755) 7510..8637 - 1128 WP_013023782.1 DUF4238 domain-containing protein -
HUZ72_RS22950 (HUZ72_22760) 8671..10194 - 1524 WP_017899887.1 hypothetical protein -
HUZ72_RS22955 (HUZ72_22765) 10470..11249 - 780 WP_013023780.1 hypothetical protein -
HUZ72_RS22960 (HUZ72_22770) 11262..11762 - 501 WP_013023779.1 HEPN family nuclease -
HUZ72_RS22965 (HUZ72_22775) 12037..12300 + 264 WP_013023778.1 hypothetical protein -
HUZ72_RS22970 (HUZ72_22780) 12297..12863 + 567 WP_013023777.1 hypothetical protein -
HUZ72_RS22975 (HUZ72_22785) 12894..13388 + 495 WP_013023776.1 hypothetical protein -
HUZ72_RS22980 (HUZ72_22790) 13432..13800 + 369 WP_048337418.1 hypothetical protein -
HUZ72_RS22985 (HUZ72_22795) 13834..14037 + 204 WP_004098931.1 HHA domain-containing protein -
HUZ72_RS22990 (HUZ72_22800) 14086..14343 + 258 WP_017899889.1 hypothetical protein -
HUZ72_RS22995 (HUZ72_22805) 14419..14673 + 255 WP_009653916.1 hypothetical protein -
HUZ72_RS23000 (HUZ72_22810) 14809..15585 - 777 WP_013609504.1 DUF2971 domain-containing protein -
HUZ72_RS23005 (HUZ72_22815) 15826..16149 - 324 WP_017899891.1 hypothetical protein -
HUZ72_RS23010 (HUZ72_22820) 16328..16597 - 270 Protein_23 SOS response-associated peptidase family protein -
HUZ72_RS23015 (HUZ72_22825) 16733..16900 + 168 Protein_24 IS5 family transposase IS903 Transposase
HUZ72_RS23020 (HUZ72_22830) 16956..17105 + 150 Protein_25 IS110 family transposase -
HUZ72_RS23025 (HUZ72_22835) 17388..18569 + 1182 WP_013023770.1 DUF4268 domain-containing protein -
HUZ72_RS23030 (HUZ72_22840) 19761..20618 - 858 WP_013023768.1 incFII family plasmid replication initiator RepA -
HUZ72_RS23040 (HUZ72_22850) 20920..21189 - 270 WP_013609506.1 replication regulatory protein RepA -
HUZ72_RS23045 (HUZ72_22855) 21307..21816 - 510 WP_052145515.1 Phospholipase D VF
HUZ72_RS23050 (HUZ72_22860) 21990..23567 - 1578 WP_001323889.1 Aerotaxis receptor VF
HUZ72_RS23055 (HUZ72_22865) 23891..24595 + 705 WP_001067855.1 IS6 family transposase IS26 Transposase
HUZ72_RS23060 (HUZ72_22870) 24645..25364 + 720 Protein_32 helicase RepA family protein -
HUZ72_RS23065 (HUZ72_22875) 25351..26202 + 852 WP_000240536.1 replication protein C, IncQ-type -
HUZ72_RS23070 (HUZ72_22880) 26510..27325 + 816 WP_001043265.1 Dihydropteroate synthase ARG
HUZ72_RS23075 (HUZ72_22885) 27386..28189 + 804 WP_001082319.1 Aminoglycoside 3'-phosphotransferase ARG
HUZ72_RS23080 (HUZ72_22890) 28189..29025 + 837 WP_000480968.1 hypothetical protein ARG
HUZ72_RS23085 (HUZ72_22895) 29086..29790 - 705 WP_001067855.1 IS6 family transposase IS26 Transposase
HUZ72_RS23090 (HUZ72_22900) 29941..30756 + 816 WP_000018329.1 Aminoglycoside 3'-phosphotransferase ARG
HUZ72_RS23095 (HUZ72_22905) 30946..31650 - 705 WP_001067855.1 IS6 family transposase IS26 Transposase
HUZ72_RS23100 (HUZ72_22910) 31715..32068 - 354 Protein_40 IS6 family transposase IS15DI Transposase
HUZ72_RS23105 (HUZ72_22915) 32131..32424 - 294 Protein_41 tunicamycin resistance protein -
HUZ72_RS23110 (HUZ72_22920) 32437..33297 - 861 WP_000557454.1 SPBc2 prophage-derived aminoglycoside N(3')-acetyltransferase-like protein YokD ARG
HUZ72_RS23115 (HUZ72_22925) 33530..34234 + 705 WP_001067855.1 IS6 family transposase IS26 Transposase
HUZ72_RS23120 (HUZ72_22930) 34705..35718 - 1014 WP_000845048.1 IS91 family transposase ISAzo26 Transposase
HUZ72_RS23125 (HUZ72_22935) 36010..36564 + 555 WP_063840321.1 Aminoglycoside N(6')-acetyltransferase type 1 ARG
HUZ72_RS23130 (HUZ72_22940) 36661..37113 + 453 WP_001749986.1 hypothetical protein ARG
HUZ72_RS23135 (HUZ72_22945) 37246..37719 + 474 WP_001749985.1 Dihydrofolate reductase type 1 ARG
HUZ72_RS23140 (HUZ72_22950) 37900..38745 + 846 WP_001749984.1 Streptomycin 3''-adenylyltransferase ARG
HUZ72_RS23145 (HUZ72_22955) 38862..39209 + 348 WP_000679427.1 Multidrug transporter EmrE ARG
HUZ72_RS23150 (HUZ72_22960) 39203..40042 + 840 WP_000259031.1 Dihydropteroate synthase ARG
HUZ72_RS23155 (HUZ72_22965) 40447..41988 + 1542 WP_000050481.1 IS91 family transposase ISVsa3 Transposase
HUZ72_RS23160 (HUZ72_22970) 42221..42760 - 540 Protein_52 ABC transporter substrate-binding protein -
HUZ72_RS23165 (HUZ72_22975) 43295..43747 + 453 WP_003833285.1 SgcJ/EcaC family oxidoreductase -
HUZ72_RS23170 (HUZ72_22980) 43789..44433 - 645 WP_065908739.1 Pentapeptide repeat protein ARG
HUZ72_RS23175 (HUZ72_22985) 44529..44684 - 156 Protein_55 helix-turn-helix domain-containing protein -
HUZ72_RS23180 (HUZ72_22990) 44727..44930 + 204 Protein_56 SMR family transporter -
HUZ72_RS23185 (HUZ72_22995) 44924..45763 + 840 WP_000259031.1 Dihydropteroate synthase ARG
HUZ72_RS23190 (HUZ72_23000) 45891..46391 + 501 WP_000376623.1 GNAT family N-acetyltransferase -
HUZ72_RS23195 (HUZ72_23005) 46712..46780 + 69 Protein_59 EAL domain-containing protein -
HUZ72_RS23200 (HUZ72_23010) 46898..47662 + 765 WP_001389365.1 IS6 family transposase IS6100 Transposase
HUZ72_RS23205 (HUZ72_23015) 48155..48739 - 585 WP_001137892.1 macrolide-binding transcriptional repressor MphR(A) -
HUZ72_RS23210 (HUZ72_23020) 48739..49977 - 1239 WP_000004159.1 macrolide resistance MFS transporter Mrx(A) -
HUZ72_RS23215 (HUZ72_23025) 49974..50879 - 906 WP_000219391.1 hypothetical protein ARG
HUZ72_RS23220 (HUZ72_23030) 51001..51705 - 705 WP_001067855.1 IS6 family transposase IS26 Transposase
HUZ72_RS23225 (HUZ72_23035) 51770..52024 + 255 Protein_65 Tn3 family transposase -
HUZ72_RS23230 (HUZ72_23040) 52082..52324 + 243 WP_000844627.1 transposase -
HUZ72_RS23235 (HUZ72_23045) 52356..53006 - 651 WP_000164043.1 tetracycline resistance transcriptional repressor TetR(A) -
HUZ72_RS23240 (HUZ72_23050) 53112..54311 + 1200 WP_000804063.1 Tetracycline resistance protein, class C ARG
HUZ72_RS23245 (HUZ72_23055) 54278..54466 - 189 Protein_69 IS91 family transposase -
HUZ72_RS23250 (HUZ72_23060) 54578..54883 - 306 WP_001255015.1 HTH-type transcriptional regulator CynR VF
HUZ72_RS23255 (HUZ72_23065) 54911..56125 - 1215 WP_000214121.1 Bicyclomycin resistance protein ARG
HUZ72_RS23260 (HUZ72_23070) 56342..56977 - 636 WP_001253263.1 DUF3363 domain-containing protein -
HUZ72_RS23265 (HUZ72_23075) 57072..60077 - 3006 WP_001143759.1 Tn3 family transposase TnpA_Tn3 Transposase
HUZ72_RS23270 (HUZ72_23080) 60241..60798 + 558 WP_001235713.1 Tn3 family transposase TnpR_Tn3 Transposase
HUZ72_RS23275 (HUZ72_23085) 60981..61841 + 861 WP_000027057.1 Beta-lactamase TEM ARG
HUZ72_RS23280 (HUZ72_23090) 62100..62576 + 477 WP_013023839.1 WbuC family cupin fold metalloprotein -
HUZ72_RS23285 (HUZ72_23095) 62623..63498 - 876 WP_011091028.1 Beta-lactamase CTX-M-1 ARG
HUZ72_RS23290 (HUZ72_23100) 63833..64027 - 195 Protein_78 IS1380 family transposase -
HUZ72_RS23295 (HUZ72_23105) 64084..64781 + 698 WP_223216367.1 IS1 family transposase IS1G Transposase
HUZ72_RS23300 (HUZ72_23110) 64797..65702 - 906 Protein_80 IS1380 family transposase ISEcp1 Transposase
HUZ72_RS23305 (HUZ72_23115) 65941..66683 + 743 Protein_81 ISKra4 family transposase ISKpn19 Transposase
HUZ72_RS23310 (HUZ72_23120) 66716..67144 + 429 Protein_82 Tn3 family transposase TnpR_ISMex22 Transposase
HUZ72_RS23315 (HUZ72_23125) 67463..68119 - 657 WP_001516695.1 Pentapeptide repeat protein ARG
HUZ72_RS23320 (HUZ72_23130) 68401..69792 - 1392 WP_001493761.1 ISKra4 family transposase ISKpn19 Transposase
HUZ72_RS23325 (HUZ72_23135) 69829..70401 - 573 WP_001493762.1 Tn3 family transposase TnpR_ISPa40 Transposase
HUZ72_RS23330 (HUZ72_23140) 70538..71083 - 546 WP_001493763.1 plasmid pRiA4b ORF-3 family protein -
HUZ72_RS23335 (HUZ72_23145) 71179..71754 + 576 WP_077256884.1 DUF4113 domain-containing protein -
HUZ72_RS23340 (HUZ72_23150) 71901..72182 - 282 WP_000780222.1 helix-turn-helix transcriptional regulator -
HUZ72_RS23345 (HUZ72_23155) 72163..72492 - 330 WP_000493286.1 type II toxin-antitoxin system RelE/ParE family toxin -
HUZ72_RS23350 (HUZ72_23160) 72728..72985 + 258 WP_048337415.1 hypothetical protein -
HUZ72_RS23355 (HUZ72_23165) 73019..73723 - 705 WP_001067858.1 IS6 family transposase IS15DI Transposase
HUZ72_RS23360 (HUZ72_23170) 73911..74219 - 309 WP_004152383.1 hypothetical protein -
HUZ72_RS23365 (HUZ72_23175) 74216..74866 - 651 WP_014343480.1 DUF2726 domain-containing protein -
HUZ72_RS23370 (HUZ72_23180) 74922..75566 - 645 WP_014343481.1 hypothetical protein -
HUZ72_RS23375 (HUZ72_23185) 75616..76218 - 603 WP_013023836.1 PIN domain-containing protein -
HUZ72_RS23380 (HUZ72_23190) 76379..76972 - 594 WP_013609537.1 fertility inhibition protein FinO -
HUZ72_RS23385 (HUZ72_23195) 77044..77769 - 726 WP_013023834.1 type-F conjugative transfer system pilin acetylase TraX -
HUZ72_RS23390 (HUZ72_23200) 77850..83111 - 5262 WP_047665818.1 Multifunctional conjugation protein TraI Relaxase
HUZ72_RS23395 (HUZ72_23205) 83111..85423 - 2313 WP_013023832.1 type IV conjugative transfer system coupling protein TraD -
HUZ72_RS23400 (HUZ72_23210) 85550..86239 - 690 WP_013023831.1 hypothetical protein -
HUZ72_RS23405 (HUZ72_23215) 86432..87163 - 732 WP_013023830.1 conjugal transfer complement resistance protein TraT -
HUZ72_RS23410 (HUZ72_23220) 87349..87882 - 534 WP_014343486.1 conjugal transfer protein TraS -
HUZ72_RS23415 (HUZ72_23225) 87885..90734 - 2850 WP_013609534.1 conjugal transfer mating-pair stabilization protein TraG -
HUZ72_RS23420 (HUZ72_23230) 90734..92113 - 1380 WP_014343487.1 conjugal transfer pilus assembly protein TraH -
HUZ72_RS23425 (HUZ72_23235) 92091..92534 - 444 WP_013023828.1 F-type conjugal transfer protein TrbF -
HUZ72_RS23430 (HUZ72_23240) 92580..93137 - 558 WP_013214031.1 type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB -
HUZ72_RS23435 (HUZ72_23245) 93109..93348 - 240 WP_004144400.1 type-F conjugative transfer system pilin chaperone TraQ -
HUZ72_RS23440 (HUZ72_23250) 93359..94111 - 753 WP_048337413.1 type-F conjugative transfer system pilin assembly protein TraF -
HUZ72_RS23445 (HUZ72_23255) 94132..94458 - 327 WP_004152676.1 hypothetical protein -
HUZ72_RS23450 (HUZ72_23260) 94471..94719 - 249 WP_004152675.1 hypothetical protein -
HUZ72_RS23455 (HUZ72_23265) 94697..94951 - 255 WP_004152674.1 conjugal transfer protein TrbE -
HUZ72_RS23460 (HUZ72_23270) 94983..96938 - 1956 WP_013023827.1 type-F conjugative transfer system mating-pair stabilization protein TraN -
HUZ72_RS23465 (HUZ72_23275) 96997..97635 - 639 WP_011977786.1 type-F conjugative transfer system pilin assembly protein TrbC -
HUZ72_RS23470 (HUZ72_23280) 97648..98637 - 990 WP_009309872.1 conjugal transfer pilus assembly protein TraU -
HUZ72_RS23475 (HUZ72_23285) 98634..99023 - 390 WP_004194992.1 hypothetical protein -
HUZ72_RS23480 (HUZ72_23290) 99065..99691 - 627 WP_009309871.1 type-F conjugative transfer system protein TraW -
HUZ72_RS23485 (HUZ72_23295) 99691..100080 - 390 WP_004197815.1 type-F conjugative transfer system protein TrbI -
HUZ72_RS23490 (HUZ72_23300) 100080..102719 - 2640 WP_013023824.1 type IV secretion system protein TraC -
HUZ72_RS23495 (HUZ72_23305) 102791..103189 - 399 WP_013609531.1 hypothetical protein -
HUZ72_RS23500 (HUZ72_23310) 103565..103969 - 405 WP_004197817.1 hypothetical protein -
HUZ72_RS23505 (HUZ72_23315) 104036..104347 - 312 WP_015344986.1 hypothetical protein -
HUZ72_RS23510 (HUZ72_23320) 104348..104566 - 219 WP_015344987.1 hypothetical protein -
HUZ72_RS23515 (HUZ72_23325) 104672..105082 - 411 WP_009309869.1 hypothetical protein -
HUZ72_RS23520 (HUZ72_23330) 105214..105798 - 585 WP_013023822.1 type IV conjugative transfer system lipoprotein TraV -
HUZ72_RS23525 (HUZ72_23335) 105912..107336 - 1425 WP_004194260.1 F-type conjugal transfer pilus assembly protein TraB -
HUZ72_RS23530 (HUZ72_23340) 107336..108076 - 741 WP_013023821.1 type-F conjugative transfer system secretin TraK -
HUZ72_RS23535 (HUZ72_23345) 108063..108629 - 567 WP_004144423.1 type IV conjugative transfer system protein TraE -
HUZ72_RS23540 (HUZ72_23350) 108649..108954 - 306 WP_004144424.1 type IV conjugative transfer system protein TraL -
HUZ72_RS23545 (HUZ72_23355) 108968..109336 - 369 WP_004194426.1 type IV conjugative transfer system pilin TraA -
HUZ72_RS24340 (HUZ72_23360) 109405..109605 - 201 WP_004194116.1 TraY domain-containing protein -
HUZ72_RS23550 (HUZ72_23365) 109691..110392 - 702 WP_004194113.1 hypothetical protein -
HUZ72_RS23555 (HUZ72_23370) 110622..111014 - 393 WP_004194114.1 conjugal transfer relaxosome DNA-binding protein TraM -
HUZ72_RS23560 (HUZ72_23375) 111446..111931 + 486 WP_001568108.1 hypothetical protein VF
HUZ72_RS23565 (HUZ72_23380) 111964..112293 - 330 WP_011977736.1 DUF5983 family protein -
HUZ72_RS23570 (HUZ72_23385) 112326..113147 - 822 WP_004152492.1 DUF932 domain-containing protein -
HUZ72_RS23575 (HUZ72_23390) 113955..115163 + 1209 WP_015344990.1 IS256 family transposase ISEic2 Transposase
HUZ72_RS23580 (HUZ72_23395) 115299..115712 - 414 WP_013023817.1 helix-turn-helix domain-containing protein -
HUZ72_RS23585 (HUZ72_23400) 115713..115991 - 279 WP_004152721.1 helix-turn-helix transcriptional regulator -
HUZ72_RS23590 (HUZ72_23405) 115981..116301 - 321 WP_004152720.1 type II toxin-antitoxin system RelE/ParE family toxin -
HUZ72_RS23595 (HUZ72_23410) 116382..116606 - 225 WP_004152719.1 hypothetical protein -
HUZ72_RS23600 (HUZ72_23415) 116617..116829 - 213 WP_013023815.1 hypothetical protein -
HUZ72_RS23605 (HUZ72_23420) 116890..117246 - 357 WP_013023814.1 hypothetical protein -
HUZ72_RS23610 (HUZ72_23425) 118088..118405 - 318 WP_013023810.1 hypothetical protein -
HUZ72_RS23615 (HUZ72_23430) 118420..118770 - 351 WP_013023809.1 hypothetical protein -
HUZ72_RS23620 (HUZ72_23435) 118767..119039 - 273 WP_014343506.1 hypothetical protein -
HUZ72_RS23625 (HUZ72_23440) 119731..119850 - 120 WP_159376494.1 type I toxin-antitoxin system Hok family toxin -
HUZ72_RS23630 119795..119947 - 153 WP_004150508.1 DUF5431 family protein -
HUZ72_RS23635 (HUZ72_23445) 120117..120491 - 375 WP_047665807.1 hypothetical protein -
HUZ72_RS23640 (HUZ72_23450) 120547..120873 - 327 WP_013023807.1 hypothetical protein -
HUZ72_RS23645 (HUZ72_23455) 120870..121598 - 729 WP_001568058.1 plasmid SOS inhibition protein A -
HUZ72_RS23650 (HUZ72_23460) 121595..122026 - 432 WP_013023806.1 conjugation system SOS inhibitor PsiB -
HUZ72_RS23655 (HUZ72_23465) 122071..124128 - 2058 WP_013023805.1 ParB/RepB/Spo0J family partition protein -
HUZ72_RS23660 (HUZ72_23470) 124198..124446 - 249 WP_001568055.1 DUF905 domain-containing protein -
HUZ72_RS23665 (HUZ72_23475) 124495..125037 - 543 WP_015344994.1 single-stranded DNA-binding protein -
HUZ72_RS23670 (HUZ72_23480) 125867..126430 - 564 WP_004152756.1 methyltransferase -
HUZ72_RS23675 (HUZ72_23485) 126478..127833 - 1356 WP_015344996.1 DUF3560 domain-containing protein -
HUZ72_RS23680 (HUZ72_23490) 127885..128115 - 231 WP_001568051.1 hypothetical protein -
HUZ72_RS23685 (HUZ72_23495) 128207..128434 - 228 WP_001568050.1 hypothetical protein -
HUZ72_RS23690 (HUZ72_23500) 129114..129434 - 321 WP_001568049.1 hypothetical protein -
HUZ72_RS23695 (HUZ72_23505) 129469..129723 - 255 WP_011977779.1 DNA polymerase III subunit theta -
HUZ72_RS23700 (HUZ72_23510) 129911..130102 - 192 WP_001568047.1 hypothetical protein -
HUZ72_RS23705 (HUZ72_23515) 130145..130651 - 507 WP_013214014.1 antirestriction protein ArdA -
HUZ72_RS23710 (HUZ72_23520) 130694..131122 - 429 WP_004152356.1 antirestriction protein -
HUZ72_RS23715 (HUZ72_23525) 131803..132570 - 768 WP_013214013.1 hypothetical protein -
HUZ72_RS23720 (HUZ72_23530) 132624..133043 - 420 WP_001568043.1 DUF1380 domain-containing protein -
HUZ72_RS23725 (HUZ72_23535) 133053..133274 - 222 WP_001568042.1 hypothetical protein -
HUZ72_RS23730 (HUZ72_23540) 133274..133975 - 702 WP_001568041.1 DNA methylase -
HUZ72_RS23735 134047..134216 - 170 Protein_168 hypothetical protein -
HUZ72_RS23740 (HUZ72_23545) 134412..134642 - 231 WP_001568040.1 hypothetical protein -
HUZ72_RS23745 (HUZ72_23550) 134706..135377 - 672 WP_015345000.1 plasmid partitioning/stability family protein -
HUZ72_RS23750 (HUZ72_23555) 135380..136351 - 972 WP_001568038.1 plasmid segregation protein ParM -
HUZ72_RS23755 (HUZ72_23560) 136600..138087 - 1488 WP_004178082.1 group II intron reverse transcriptase/maturase -
HUZ72_RS23760 (HUZ72_23565) 138494..138925 + 432 WP_001568036.1 translesion error-prone DNA polymerase V autoproteolytic subunit -
HUZ72_RS23765 (HUZ72_23570) 138925..140196 + 1272 WP_004197646.1 Y-family DNA polymerase -

Similar MGE(s)


Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.

Detail Organism MGE type Related TA Genome accession Coordinates Mash
distance