MGE detailed information
MGE type: Prophage MGE length: 24297 bp
Accession: NZ_CP055000 Location: 1985535..2009831 Organism: Shigella flexneri strain STIN_80 Replicon: chromosome
Accession: NZ_CP055000 Location: 1985535..2009831 Organism: Shigella flexneri strain STIN_80 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUZ55_RS09610 () | 1981678..1983489 | + | 1812 | WP_001069486.1 | phosphogluconate dehydratase | - |
| HUZ55_RS09615 () | 1983526..1984167 | + | 642 | WP_000800512.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| HUZ55_RS09620 () | 1984223..1985401 | - | 1179 | WP_000173509.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| HUZ55_RS09625 () | 1985535..1985825 | + | 291 | WP_000257738.1 | DNA damage-inducible protein YebG | - |
| HUZ55_RS09630 () | 1985892..1986195 | + | 304 | Protein_1887 | protein YebF | - |
| HUZ55_RS09635 () | 1986224..1986921 | + | 698 | WP_094096600.1 | IS1-like element IS1A family transposase | - |
| HUZ55_RS09640 () | 1986924..1987025 | + | 102 | Protein_1889 | YebF family protein | - |
| HUZ55_RS09645 () | 1987352..1988011 | + | 660 | WP_000024746.1 | tellurite resistance TerB family protein | - |
| HUZ55_RS09650 () | 1988220..1990280 | + | 2061 | WP_023281963.1 | oligopeptidase B | - |
| HUZ55_RS09655 () | 1990277..1990939 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HUZ55_RS09660 () | 1990963..1991619 | - | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein YobB | - |
| HUZ55_RS09665 () | 1991721..1991951 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HUZ55_RS09670 () | 1992090..1992464 | + | 375 | WP_000255065.1 | CopC domain-containing protein YobA | - |
| HUZ55_RS09675 () | 1992468..1993340 | + | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| HUZ55_RS09680 () | 1993353..1993694 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1993722..1993993 | - | 272 | - | - | Antitoxin Detail |
| - | 1993852..1993955 | + | 104 | - | - | Toxin Detail |
| HUZ55_RS09685 () | 1994090..1994746 | + | 657 | WP_000812733.1 | protein-serine/threonine phosphatase | - |
| HUZ55_RS09690 () | 1994747..1994938 | - | 192 | WP_001338167.1 | YebW family protein | - |
| HUZ55_RS09695 () | 1995043..1995279 | - | 237 | WP_001338166.1 | YebV family protein | - |
| HUZ55_RS09700 () | 1995397..1996836 | - | 1440 | WP_001338165.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HUZ55_RS09705 () | 1996916..1999549 | - | 2634 | WP_001297532.1 | hypothetical protein | VF |
| HUZ55_RS09710 () | 1999518..2000801 | - | 1284 | WP_001741872.1 | membrane integrity lipid transport subunit YebS | - |
| HUZ55_RS09715 () | 2000931..2001428 | + | 498 | WP_001043882.1 | L-methionine (R)-S-oxide reductase | - |
| HUZ55_RS09720 () | 2001525..2002223 | + | 699 | WP_000431370.1 | RNA chaperone ProQ | - |
| HUZ55_RS09725 () | 2002243..2004291 | + | 2049 | WP_096037829.1 | carboxy terminal-processing peptidase | - |
| HUZ55_RS09730 () | 2004483..2005364 | + | 882 | WP_000984517.1 | protease HtpX | - |
| HUZ55_RS09735 () | 2005410..2006783 | - | 1374 | WP_001127216.1 | MFS transporter | - |
| HUZ55_RS09740 () | 2006960..2007751 | + | 792 | WP_239592417.1 | DNA-binding transcriptional regulator KdgR | - |
| HUZ55_RS09745 () | 2007894..2008133 | - | 240 | WP_001211011.1 | YobH family protein | - |
| HUZ55_RS09750 () | 2008292..2008435 | + | 144 | WP_000714550.1 | PhoP/PhoQ regulator MgrB | - |
| HUZ55_RS09755 () | 2008510..2008797 | + | 288 | WP_001006866.1 | YebO family protein | - |
| HUZ55_RS09760 () | 2009466..2009609 | + | 144 | WP_001295496.1 | DUF2627 domain-containing protein | - |
| HUZ55_RS09765 () | 2009622..2009831 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| HUZ55_RS09770 () | 2009997..2010806 | + | 810 | WP_000010115.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| HUZ55_RS09775 () | 2010803..2011369 | - | 567 | WP_001296134.1 | manganese efflux pump MntP | - |
| HUZ55_RS09780 () | 2011798..2012256 | - | 459 | WP_000156255.1 | DUF986 family protein | - |
| HUZ55_RS09785 () | 2012311..2013162 | - | 852 | WP_239592418.1 | PTS mannose transporter subunit IID | - |
| HUZ55_RS09790 () | 2013175..2013975 | - | 801 | WP_000406926.1 | PTS mannose transporter subunit IIC | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|