Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1993722..1993993 | Replicon | chromosome |
| Accession | NZ_CP055000 | ||
| Organism | Shigella flexneri strain STIN_80 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1993852..1993955 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1993722..1993993 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUZ55_RS09655 | 1990277..1990939 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HUZ55_RS09660 | 1990963..1991619 | - | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein YobB | - |
| HUZ55_RS09665 | 1991721..1991951 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HUZ55_RS09670 | 1992090..1992464 | + | 375 | WP_000255065.1 | CopC domain-containing protein YobA | - |
| HUZ55_RS09675 | 1992468..1993340 | + | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| HUZ55_RS09680 | 1993353..1993694 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1993722..1993993 | - | 272 | - | - | Antitoxin |
| - | 1993852..1993955 | + | 104 | - | - | Toxin |
| HUZ55_RS09685 | 1994090..1994746 | + | 657 | WP_000812733.1 | protein-serine/threonine phosphatase | - |
| HUZ55_RS09690 | 1994747..1994938 | - | 192 | WP_001338167.1 | YebW family protein | - |
| HUZ55_RS09695 | 1995043..1995279 | - | 237 | WP_001338166.1 | YebV family protein | - |
| HUZ55_RS09700 | 1995397..1996836 | - | 1440 | WP_001338165.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1985535..2009831 | 24296 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T160887 NZ_CP055000:1993852-1993955 [Shigella flexneri]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT160887 NZ_CP055000:c1993993-1993722 [Shigella flexneri]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
