MGE detailed information
MGE type: Prophage MGE length: 35089 bp
Accession: NZ_CP054977 Location: 2314304..2349392 Organism: Shigella flexneri strain STIN_92 Replicon: chromosome
Accession: NZ_CP054977 Location: 2314304..2349392 Organism: Shigella flexneri strain STIN_92 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUZ60_RS11230 (2311679) | 2311679..2314105 | - | 2427 | WP_000041675.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| HUZ60_RS11235 (2314304) | 2314304..2314609 | - | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| HUZ60_RS11240 (2314717) | 2314717..2315427 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| HUZ60_RS11245 (2315430) | 2315430..2315990 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| HUZ60_RS11250 (2316025) | 2316025..2316366 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| HUZ60_RS11255 (2316501) | 2316501..2316827 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| HUZ60_RS11260 (2317033) | 2317033..2318247 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| HUZ60_RS11265 (2318259) | 2318259..2319278 | + | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| HUZ60_RS11270 (2319466) | 2319466..2320746 | - | 1281 | WP_000876958.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| HUZ60_RS11275 (2320781) | 2320781..2321032 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| HUZ60_RS11280 (2321105) | 2321105..2322814 | - | 1710 | Protein_2215 | 3'-5' exoribonuclease | - |
| HUZ60_RS11285 (2322802) | 2322802..2323059 | + | 258 | Protein_2216 | hypothetical protein | - |
| HUZ60_RS11290 (2323100) | 2323100..2323522 | + | 423 | WP_001151262.1 | DUF977 family protein | - |
| HUZ60_RS11295 (2323519) | 2323519..2324008 | + | 490 | Protein_2218 | class I SAM-dependent methyltransferase | - |
| HUZ60_RS11300 (2324391) | 2324391..2325930 | - | 1540 | Protein_2219 | IS66 family transposase ISEc22 | Transposase |
| HUZ60_RS11305 (2325979) | 2325979..2326209 | - | 231 | Protein_2220 | IS66 family insertion sequence element accessory protein TnpB | - |
| HUZ60_RS11310 (2326215) | 2326215..2326337 | - | 123 | Protein_2221 | IS66 family transposase ISEc22 | Transposase |
| HUZ60_RS11315 (2326580) | 2326580..2327001 | + | 422 | Protein_2222 | hypothetical protein | - |
| HUZ60_RS11320 (2327636) | 2327636..2328949 | + | 1314 | WP_000589005.1 | ISNCY family transposase ISCARN112 | Transposase |
| HUZ60_RS11325 (2329386) | 2329386..2329718 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| HUZ60_RS11330 (2329921) | 2329921..2330226 | - | 306 | WP_001326990.1 | protein YdfV | - |
| HUZ60_RS11335 (2330251) | 2330251..2330490 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| HUZ60_RS11340 (2330490) | 2330490..2330777 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| HUZ60_RS11345 (2330849) | 2330849..2331004 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| HUZ60_RS11350 (2331221) | 2331221..2331472 | + | 252 | WP_000980994.1 | protein Rem | - |
| HUZ60_RS11355 (2331539) | 2331539..2331817 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| HUZ60_RS11360 (2331819) | 2331819..2332868 | + | 1050 | WP_001265199.1 | DUF968 domain-containing protein | - |
| HUZ60_RS11365 (2332882) | 2332882..2333634 | + | 753 | WP_001047135.1 | antitermination protein | - |
| HUZ60_RS11370 (2333912) | 2333912..2334001 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| HUZ60_RS11375 (2334056) | 2334056..2334268 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| HUZ60_RS11380 (2334569) | 2334569..2334784 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| HUZ60_RS11385 (2335148) | 2335148..2335318 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| HUZ60_RS11395 (2336315) | 2336315..2336530 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| HUZ60_RS11400 (2336535) | 2336535..2336846 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| HUZ60_RS11405 (2336843) | 2336843..2337376 | + | 534 | WP_239636741.1 | lysozyme | - |
| HUZ60_RS11410 (2337373) | 2337373..2337870 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| HUZ60_RS11415 (2338233) | 2338233..2338445 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| HUZ60_RS11420 (2338456) | 2338456..2338644 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| HUZ60_RS11425 (2338647) | 2338647..2338712 | + | 66 | WP_120795388.1 | small protein YnfR | - |
| HUZ60_RS11430 (2338717) | 2338717..2338947 | + | 231 | WP_000720962.1 | protein YnfN | - |
| HUZ60_RS11435 (2339119) | 2339119..2339292 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| HUZ60_RS11440 (2339444) | 2339444..2339854 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| HUZ60_RS11445 (2339912) | 2339912..2340145 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| HUZ60_RS11450 (2340534) | 2340534..2341079 | + | 546 | WP_000453611.1 | DNA-packaging protein | - |
| HUZ60_RS11455 (2341054) | 2341054..2342859 | + | 1806 | WP_049254577.1 | phage terminase large subunit family protein | - |
| HUZ60_RS11460 (2342859) | 2342859..2343434 | + | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| HUZ60_RS11465 (2343532) | 2343532..2344122 | - | 591 | WP_239636750.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| HUZ60_RS11470 (2344439) | 2344439..2344672 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| HUZ60_RS11475 (2344741) | 2344741..2344854 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| HUZ60_RS11480 (2345375) | 2345375..2346742 | + | 1368 | Protein_2255 | MHS family MFS transporter | - |
| HUZ60_RS11485 (2346831) | 2346831..2348291 | + | 1461 | WP_000527809.1 | mannitol dehydrogenase family protein | - |
| HUZ60_RS11490 (2348326) | 2348326..2348529 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| HUZ60_RS11495 (2348706) | 2348706..2349392 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| HUZ60_RS11500 (2349481) | 2349481..2350227 | - | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| HUZ60_RS11505 (2350364) | 2350364..2352409 | + | 2046 | WP_000210373.1 | peptidyl-dipeptidase Dcp | - |
| HUZ60_RS11510 (2352453) | 2352453..2352971 | - | 519 | WP_001024746.1 | 2-oxo-tetronate isomerase | - |
| HUZ60_RS11515 (2353247) | 2353247..2353639 | + | 393 | WP_000671737.1 | YdeI family stress tolerance OB fold protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|