MGE detailed information
MGE type: Prophage MGE length: 60239 bp
Accession: NZ_CP054371 Location: 2333899..2394137 Organism: Escherichia coli strain SCU-316 Replicon: chromosome
Accession: NZ_CP054371 Location: 2333899..2394137 Organism: Escherichia coli strain SCU-316 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPE41_RS10785 () | 2330413..2331159 | + | 747 | WP_000636575.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| HPE41_RS10790 () | 2331248..2331934 | + | 687 | WP_000215556.1 | DNA-binding transcriptional regulator YdfH | - |
| HPE41_RS10795 () | 2332111..2332314 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| HPE41_RS10800 () | 2332350..2333810 | - | 1461 | WP_000527836.1 | mannitol dehydrogenase family protein | - |
| HPE41_RS10805 () | 2333899..2335182 | - | 1284 | Protein_2110 | MHS family MFS transporter | - |
| HPE41_RS10810 () | 2335787..2335900 | + | 114 | WP_120795384.1 | hypothetical protein | - |
| HPE41_RS10815 () | 2335969..2336202 | + | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| HPE41_RS10820 () | 2336519..2337109 | + | 591 | WP_000086527.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| HPE41_RS10825 () | 2337207..2337782 | - | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| HPE41_RS10830 () | 2337782..2340853 | - | 3072 | WP_075209605.1 | prophage tail fiber N-terminal domain-containing protein | - |
| HPE41_RS10835 () | 2340918..2341517 | - | 600 | WP_001230375.1 | Attachment invasion locus protein | VF |
| HPE41_RS10840 () | 2341585..2345064 | - | 3480 | WP_044723265.1 | host specificity protein J | - |
| HPE41_RS10845 () | 2345125..2345757 | - | 633 | WP_174166951.1 | tail assembly protein | - |
| HPE41_RS10850 () | 2345694..2346437 | - | 744 | WP_000140768.1 | C40 family peptidase | - |
| HPE41_RS10855 () | 2346442..2347140 | - | 699 | WP_001152612.1 | phage minor tail protein L | - |
| HPE41_RS10860 () | 2347140..2347469 | - | 330 | WP_000847345.1 | phage tail protein | - |
| HPE41_RS10865 () | 2347466..2350027 | - | 2562 | WP_174166958.1 | phage tail tape measure protein | - |
| HPE41_RS10870 () | 2350020..2350454 | - | 435 | WP_000459457.1 | phage tail assembly protein T | - |
| HPE41_RS10875 () | 2350436..2350858 | - | 423 | WP_000479146.1 | phage minor tail protein G | - |
| HPE41_RS10880 () | 2350874..2351614 | - | 741 | WP_001528302.1 | phage tail protein | - |
| HPE41_RS10885 () | 2351622..2352017 | - | 396 | WP_000683105.1 | phage minor tail U family protein | - |
| HPE41_RS10890 () | 2352014..2352592 | - | 579 | WP_001541219.1 | phage tail protein | - |
| HPE41_RS10895 () | 2352604..2352957 | - | 354 | WP_000753001.1 | head-tail joining protein | - |
| HPE41_RS10900 () | 2352969..2353364 | - | 396 | WP_032318908.1 | DNA-packaging protein FI | - |
| HPE41_RS10905 () | 2353406..2354194 | - | 789 | Protein_2130 | major capsid protein | - |
| HPE41_RS10910 () | 2354378..2355250 | + | 873 | WP_053884661.1 | hypothetical protein | - |
| HPE41_RS10915 () | 2356296..2356679 | - | 384 | WP_001178671.1 | AlpA family phage regulatory protein | - |
| HPE41_RS10920 () | 2356691..2357032 | - | 342 | WP_000190772.1 | head decoration protein | - |
| HPE41_RS10925 () | 2357042..2358082 | - | 1041 | WP_112047712.1 | major capsid protein | - |
| HPE41_RS10930 () | 2358300..2358750 | - | 451 | Protein_2135 | single-stranded DNA-binding protein | - |
| HPE41_RS10935 () | 2358747..2358992 | - | 246 | WP_000125506.1 | hypothetical protein | - |
| HPE41_RS10940 () | 2359280..2361100 | - | 1821 | WP_000817024.1 | DNA primase | - |
| HPE41_RS10945 () | 2361097..2361384 | - | 288 | WP_000790824.1 | DUF4222 domain-containing protein | - |
| HPE41_RS10950 () | 2361388..2361612 | - | 225 | WP_000999172.1 | hypothetical protein | - |
| HPE41_RS10955 () | 2361605..2361868 | - | 264 | WP_089587471.1 | host cell division inhibitor Icd-like protein | - |
| HPE41_RS10960 () | 2361948..2362142 | + | 195 | WP_024239330.1 | hypothetical protein | - |
| HPE41_RS10965 () | 2362166..2363517 | + | 1352 | Protein_2142 | hypothetical protein | - |
| HPE41_RS10970 () | 2363569..2363790 | - | 222 | WP_024239328.1 | AlpA family phage regulatory protein | - |
| HPE41_RS10975 () | 2363792..2365027 | - | 1236 | WP_000896724.1 | Prophage integrase IntS ; Integrase | Integrase |
| HPE41_RS10980 () | 2365190..2365435 | - | 246 | Protein_2145 | major capsid protein | - |
| HPE41_RS10985 () | 2365491..2365823 | - | 333 | WP_012304872.1 | head decoration protein | - |
| HPE41_RS10990 () | 2365833..2367152 | - | 1320 | WP_080029809.1 | S49 family peptidase | - |
| HPE41_RS10995 () | 2367133..2368734 | - | 1602 | WP_001356819.1 | phage portal protein | - |
| HPE41_RS11000 () | 2368731..2368937 | - | 207 | WP_000198149.1 | gpW family protein | - |
| HPE41_RS11005 () | 2368934..2370859 | - | 1926 | WP_001027293.1 | phage terminase large subunit family protein | - |
| HPE41_RS11010 () | 2370834..2371379 | - | 546 | WP_000453611.1 | DNA-packaging protein | - |
| HPE41_RS11015 () | 2371768..2372001 | + | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| HPE41_RS11020 () | 2372059..2372469 | + | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| HPE41_RS11025 () | 2372621..2372794 | - | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| HPE41_RS11030 () | 2372966..2373121 | - | 156 | WP_001309517.1 | hypothetical protein | - |
| HPE41_RS11035 () | 2373201..2373266 | - | 66 | WP_120795388.1 | hypothetical protein | - |
| HPE41_RS11040 () | 2373269..2373457 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| HPE41_RS11045 () | 2373468..2373680 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| HPE41_RS11050 () | 2374043..2374540 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| HPE41_RS11055 () | 2374537..2375070 | - | 534 | WP_001092971.1 | lysozyme | - |
| HPE41_RS11060 () | 2375067..2375378 | - | 312 | WP_000189916.1 | YdfR family protein | - |
| HPE41_RS11065 () | 2375383..2375598 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| HPE41_RS11070 () | 2376352..2376567 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| HPE41_RS11075 () | 2376868..2377080 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| HPE41_RS11080 () | 2377135..2377224 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| HPE41_RS11085 () | 2377503..2378255 | - | 753 | WP_112033706.1 | antitermination protein | - |
| HPE41_RS11090 () | 2378269..2379318 | - | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| HPE41_RS11095 () | 2379320..2379598 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| HPE41_RS11100 () | 2379665..2379916 | - | 252 | WP_000980994.1 | hypothetical protein | - |
| HPE41_RS11105 () | 2380133..2380288 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| HPE41_RS11110 () | 2380360..2380647 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| HPE41_RS11115 () | 2380647..2380886 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| HPE41_RS11120 () | 2380911..2381216 | + | 306 | WP_001326990.1 | hypothetical protein | - |
| HPE41_RS11125 () | 2381419..2381751 | + | 333 | WP_001301033.1 | protein FlxA | - |
| HPE41_RS11130 () | 2382188..2383501 | - | 1314 | WP_000589005.1 | ISNCY family transposase ISCARN112 | Transposase |
| HPE41_RS11135 () | 2383679..2383861 | + | 183 | WP_000955178.1 | hypothetical protein | - |
| HPE41_RS11140 () | 2385172..2385528 | - | 357 | WP_174166959.1 | class I SAM-dependent methyltransferase | - |
| HPE41_RS11145 () | 2385525..2385947 | - | 423 | WP_001151262.1 | DUF977 family protein | - |
| HPE41_RS11150 () | 2385988..2386953 | - | 966 | WP_000054512.1 | hypothetical protein | - |
| HPE41_RS11155 () | 2386934..2387455 | - | 522 | WP_000705358.1 | hypothetical protein | - |
| HPE41_RS11160 () | 2387439..2387669 | - | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| HPE41_RS11165 () | 2387753..2388160 | + | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| HPE41_RS11170 () | 2388327..2388482 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| HPE41_RS11175 () | 2388642..2388860 | + | 219 | WP_001171942.1 | hypothetical protein | - |
| HPE41_RS11180 () | 2388864..2389028 | - | 165 | WP_001329848.1 | hypothetical protein | - |
| HPE41_RS11185 () | 2389428..2389616 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| HPE41_RS11190 () | 2389613..2389804 | + | 192 | WP_001083297.1 | lysis protein YdfD | - |
| HPE41_RS11195 () | 2389897..2392368 | + | 2472 | WP_000048342.1 | exonuclease | - |
| HPE41_RS11200 () | 2392441..2392692 | + | 252 | WP_000005552.1 | excisionase family protein | - |
| HPE41_RS11205 () | 2392727..2394007 | + | 1281 | WP_000876958.1 | Putative defective protein IntQ ; Integrase | Integrase |
| HPE41_RS11210 () | 2394027..2394137 | - | 111 | WP_174166960.1 | transporter | - |
| HPE41_RS11215 () | 2394195..2395214 | - | 1020 | WP_000836059.1 | Zn-dependent oxidoreductase | - |
| HPE41_RS11220 () | 2395226..2396440 | - | 1215 | WP_024257740.1 | starvation-sensing protein RspA | - |
| HPE41_RS11225 () | 2396621..2396971 | - | 351 | WP_000598291.1 | YnfA family protein | - |
| HPE41_RS11230 () | 2397106..2397447 | + | 342 | WP_000705197.1 | DUF1283 family protein | - |
| HPE41_RS11235 () | 2397482..2398042 | + | 561 | WP_001138584.1 | spermidine N1-acetyltransferase | - |
| HPE41_RS11240 () | 2398045..2398755 | - | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|