MGE detailed information
MGE type: Conjugative plasmid MGE length: 75628 bp
Accession: NZ_CP054356 Location: 1..75628 Organism: Escherichia coli strain SCU-172 Replicon: plasmid pSCU-172-3
Accession: NZ_CP054356 Location: 1..75628 Organism: Escherichia coli strain SCU-172 Replicon: plasmid pSCU-172-3
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPE50_RS26410 () | 1560..1820 | + | 261 | WP_019842130.1 | hypothetical protein | - |
| HPE50_RS26415 () | 1927..2190 | + | 264 | WP_001089473.1 | hypothetical protein | - |
| HPE50_RS26420 () | 2180..2479 | + | 300 | WP_001528606.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| HPE50_RS26425 () | 2515..2949 | - | 435 | Protein_4 | hypothetical protein | - |
| HPE50_RS26430 () | 2982..5969 | - | 2988 | WP_174183295.1 | Tn3 family transposase TnpA_TnEc1 | Transposase |
| HPE50_RS26435 () | 6136..6777 | + | 642 | WP_024221658.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| HPE50_RS26440 () | 6824..7060 | - | 237 | Protein_7 | hypothetical protein | - |
| HPE50_RS26445 () | 7248..8108 | - | 861 | WP_000027057.1 | Beta-lactamase TEM | ARG |
| HPE50_RS26450 () | 8291..8848 | - | 558 | WP_001235713.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| HPE50_RS26455 () | 9012..12017 | + | 3006 | WP_174183299.1 | Tn3 family transposase TnpA_Tn3 | Transposase |
| HPE50_RS26460 () | 12585..13148 | - | 564 | WP_000351266.1 | pentapeptide repeat-containing protein | - |
| HPE50_RS26465 () | 13152..13883 | - | 732 | WP_000155032.1 | ATP-binding cassette domain-containing protein | - |
| HPE50_RS26470 () | 13880..14605 | - | 726 | WP_000258040.1 | microcin B17 immunity protein McbE | - |
| HPE50_RS26475 () | 14615..15805 | - | 1191 | WP_000611492.1 | YcaO-like family protein | - |
| HPE50_RS26480 () | 15786..16604 | - | 819 | WP_001528601.1 | SagB/ThcOx family dehydrogenase | - |
| HPE50_RS26485 () | 16606..17493 | - | 888 | WP_000243884.1 | McbB family protein | - |
| HPE50_RS26490 () | 17520..17729 | - | 210 | WP_001535752.1 | microcin B17 | - |
| HPE50_RS26495 () | 18259..18711 | + | 453 | WP_000670962.1 | N-acetyltransferase | - |
| HPE50_RS26500 () | 19114..19464 | - | 351 | WP_001365718.1 | plasmid partitioning/stability family protein | - |
| HPE50_RS26505 () | 19467..20429 | - | 963 | WP_000959884.1 | plasmid segregation protein ParM | - |
| HPE50_RS26510 () | 20965..21867 | + | 903 | WP_174183301.1 | DUF1281 domain-containing protein | - |
| HPE50_RS26515 () | 21864..22175 | + | 312 | WP_001310011.1 | hypothetical protein | - |
| HPE50_RS26520 () | 22251..22934 | + | 684 | WP_000086169.1 | DNA methylase | - |
| HPE50_RS26525 () | 22935..23156 | + | 222 | WP_001104873.1 | hypothetical protein | - |
| HPE50_RS26530 () | 23170..23604 | + | 435 | WP_000274482.1 | DUF1380 family protein | - |
| HPE50_RS26535 () | 23649..24419 | + | 771 | WP_001004562.1 | hypothetical protein | - |
| HPE50_RS26540 () | 24394..24862 | + | 469 | Protein_27 | DUF1472 domain-containing protein | - |
| HPE50_RS26545 () | 24958..25260 | + | 303 | WP_001364029.1 | antirestriction protein | - |
| HPE50_RS26550 () | 25307..25726 | + | 420 | WP_000271737.1 | DUF1380 family protein | - |
| HPE50_RS26555 () | 25726..25917 | + | 192 | WP_001027049.1 | hypothetical protein | - |
| HPE50_RS26560 () | 25896..26367 | - | 472 | Protein_31 | hypothetical protein | - |
| HPE50_RS26565 () | 26885..27115 | + | 231 | WP_000218644.1 | hypothetical protein | - |
| HPE50_RS26570 () | 27167..28528 | + | 1362 | WP_000170705.1 | DUF3560 domain-containing protein | - |
| HPE50_RS26575 () | 28575..29138 | + | 564 | WP_001309257.1 | class I SAM-dependent methyltransferase | - |
| HPE50_RS26580 () | 29668..29904 | - | 237 | WP_032072846.1 | hypothetical protein | - |
| HPE50_RS26585 () | 29969..30496 | + | 528 | WP_000290834.1 | single-stranded DNA-binding protein | - |
| HPE50_RS26590 () | 30554..30787 | + | 234 | WP_000006003.1 | DUF905 family protein | - |
| HPE50_RS26595 () | 30848..32812 | + | 1965 | WP_000117316.1 | ParB/RepB/Spo0J family partition protein | - |
| HPE50_RS26600 () | 32881..33315 | + | 435 | WP_000845953.1 | conjugation system SOS inhibitor PsiB | - |
| HPE50_RS26605 () | 33312..34031 | + | 720 | WP_001276217.1 | plasmid SOS inhibition protein A | - |
| - () | 34043..34267 | + | 225 | NuclAT_0 | - | - |
| - () | 34043..34267 | + | 225 | NuclAT_0 | - | - |
| - () | 34043..34267 | + | 225 | NuclAT_0 | - | - |
| - () | 34043..34267 | + | 225 | NuclAT_0 | - | - |
| HPE50_RS26610 () | 34052..34231 | - | 180 | WP_001309233.1 | hypothetical protein | - |
| HPE50_RS26615 () | 34311..34469 | + | 159 | WP_001312861.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| HPE50_RS26620 () | 34707..35085 | - | 379 | Protein_43 | hypothetical protein | - |
| HPE50_RS26625 () | 35381..35677 | + | 297 | WP_001272251.1 | hypothetical protein | - |
| HPE50_RS26630 () | 35788..36609 | + | 822 | WP_001234445.1 | DUF945 domain-containing protein | - |
| HPE50_RS26635 () | 36906..37508 | - | 603 | Protein_46 | hypothetical protein | VF |
| HPE50_RS26640 () | 37829..38212 | + | 384 | WP_001151538.1 | relaxosome protein TraM | - |
| HPE50_RS26645 () | 38399..39088 | + | 690 | WP_016239105.1 | conjugal transfer transcriptional regulator TraJ | - |
| HPE50_RS26650 () | 39187..39582 | + | 396 | WP_001309237.1 | conjugal transfer relaxosome protein TraY | - |
| HPE50_RS26655 () | 39615..39974 | + | 360 | WP_019842162.1 | type IV conjugative transfer system pilin TraA | - |
| HPE50_RS26660 () | 39989..40300 | + | 312 | WP_000012113.1 | type IV conjugative transfer system protein TraL | - |
| HPE50_RS26665 () | 40322..40888 | + | 567 | WP_000399801.1 | type IV conjugative transfer system protein TraE | - |
| HPE50_RS26670 () | 40875..41603 | + | 729 | WP_001230771.1 | type-F conjugative transfer system secretin TraK | - |
| HPE50_RS26675 () | 41603..43054 | + | 1452 | WP_000146663.1 | conjugal transfer protein TraB | - |
| HPE50_RS26680 () | 43023..43610 | + | 588 | WP_001309238.1 | conjugal transfer protein TraP | - |
| HPE50_RS26685 () | 43564..43914 | + | 351 | WP_071586941.1 | conjugal transfer protein TrbD | - |
| HPE50_RS26690 () | 43914..44429 | + | 516 | WP_000809872.1 | type IV conjugative transfer system lipoprotein TraV | - |
| HPE50_RS26695 () | 44564..44785 | + | 222 | WP_001278695.1 | conjugal transfer protein TraR | - |
| HPE50_RS26700 () | 44778..45255 | + | 478 | Protein_59 | hypothetical protein | - |
| HPE50_RS26705 () | 45335..45553 | + | 219 | WP_000556745.1 | hypothetical protein | - |
| HPE50_RS26710 () | 45581..45928 | + | 348 | WP_000836682.1 | hypothetical protein | - |
| HPE50_RS26715 () | 46054..48684 | + | 2631 | WP_032152342.1 | type IV secretion system protein TraC | - |
| HPE50_RS26720 () | 48681..49067 | + | 387 | WP_000214084.1 | type-F conjugative transfer system protein TrbI | - |
| HPE50_RS26725 () | 49064..49696 | + | 633 | WP_001203720.1 | type-F conjugative transfer system protein TraW | - |
| HPE50_RS26730 () | 49693..50685 | + | 993 | WP_000830849.1 | conjugal transfer pilus assembly protein TraU | - |
| HPE50_RS26735 () | 50715..51020 | + | 306 | WP_000224418.1 | hypothetical protein | - |
| HPE50_RS26740 () | 51029..51667 | + | 639 | WP_162755178.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| HPE50_RS26745 () | 51664..53514 | + | 1851 | WP_000821860.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| HPE50_RS26750 () | 53541..53798 | + | 258 | WP_000864329.1 | conjugal transfer protein TrbE | - |
| HPE50_RS26755 () | 53791..54534 | + | 744 | WP_001030371.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| HPE50_RS26760 () | 54548..54892 | + | 345 | WP_000556796.1 | conjugal transfer protein TrbA | - |
| HPE50_RS26765 () | 55011..55295 | + | 285 | WP_000624107.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| HPE50_RS26770 () | 55282..55827 | + | 546 | WP_000059831.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| HPE50_RS26775 () | 55757..56104 | + | 348 | WP_001309242.1 | P-type conjugative transfer protein TrbJ | - |
| HPE50_RS26780 () | 56052..56477 | + | 426 | WP_001323332.1 | F-type conjugal transfer protein TrbF | - |
| HPE50_RS26785 () | 56464..57837 | + | 1374 | WP_000944331.1 | conjugal transfer protein TraH | - |
| HPE50_RS26790 () | 57834..60656 | + | 2823 | WP_001007080.1 | conjugal transfer mating pair stabilization protein TraG | - |
| HPE50_RS26795 () | 60672..61157 | + | 486 | WP_020241360.1 | surface exclusion inner membrane protein | - |
| HPE50_RS26800 () | 61206..61937 | + | 732 | WP_000782451.1 | complement resistance protein TraT | - |
| HPE50_RS26805 () | 62140..62877 | + | 738 | WP_000199901.1 | hypothetical protein | - |
| HPE50_RS26810 () | 62928..65153 | + | 2226 | WP_001577029.1 | type IV conjugative transfer system coupling protein TraD | - |
| HPE50_RS26815 () | 65153..70423 | + | 5271 | WP_174183300.1 | Multifunctional conjugation protein TraI | Relaxase |
| HPE50_RS26820 () | 70443..71189 | + | 747 | WP_000205726.1 | conjugal transfer pilus acetylase TraX | - |
| HPE50_RS26825 () | 71244..71801 | + | 558 | WP_000139329.1 | fertility inhibition protein FinO | - |
| HPE50_RS26830 () | 71953..72156 | + | 204 | WP_001336517.1 | hypothetical protein | - |
| HPE50_RS26835 () | 72898..73359 | + | 462 | WP_019842128.1 | thermonuclease family protein | - |
| HPE50_RS26840 () | 73628..73846 | + | 219 | WP_023150739.1 | hypothetical protein | - |
| HPE50_RS26845 () | 73999..74436 | + | 438 | WP_000872609.1 | hypothetical protein | - |
| - () | 74531..74587 | - | 57 | NuclAT_1 | - | Antitoxin Detail |
| - () | 74531..74587 | - | 57 | NuclAT_1 | - | Antitoxin Detail |
| - () | 74531..74587 | - | 57 | NuclAT_1 | - | Antitoxin Detail |
| - () | 74531..74587 | - | 57 | NuclAT_1 | - | Antitoxin Detail |
| HPE50_RS26850 () | 74635..74784 | + | 150 | WP_001336447.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| HPE50_RS26855 () | 75069..75326 | + | 258 | WP_000084404.1 | replication regulatory protein RepA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|