MGE detailed information
MGE type: Prophage MGE length: 57879 bp
Accession: NZ_CP054353 Location: 2505304..2563182 Organism: Escherichia coli strain SCU-172 Replicon: chromosome
Accession: NZ_CP054353 Location: 2505304..2563182 Organism: Escherichia coli strain SCU-172 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPE50_RS12405 () | 2501817..2502563 | + | 747 | WP_001296081.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| HPE50_RS12410 () | 2502652..2503338 | + | 687 | WP_000215553.1 | DNA-binding transcriptional regulator YdfH | - |
| HPE50_RS12415 () | 2503516..2503719 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| HPE50_RS12420 () | 2503755..2505215 | - | 1461 | WP_000527820.1 | mannitol dehydrogenase family protein | - |
| HPE50_RS12425 () | 2505304..2506587 | - | 1284 | Protein_2407 | MHS family MFS transporter | - |
| HPE50_RS12430 () | 2507191..2507304 | + | 114 | WP_120795384.1 | hypothetical protein | - |
| HPE50_RS12435 () | 2507373..2507606 | + | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| HPE50_RS12440 () | 2507923..2508513 | + | 591 | WP_000086527.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| HPE50_RS12445 () | 2508611..2508721 | - | 111 | Protein_2411 | tail fiber assembly protein | - |
| HPE50_RS12450 () | 2508741..2509034 | - | 294 | WP_000355609.1 | hypothetical protein | - |
| HPE50_RS12455 () | 2509045..2509749 | - | 705 | WP_000235980.1 | tail fiber domain-containing protein | - |
| HPE50_RS12460 () | 2509759..2510040 | - | 282 | WP_000654160.1 | hypothetical protein | - |
| HPE50_RS12465 () | 2510247..2510944 | + | 698 | Protein_2415 | IS1 family transposase IS1G | Transposase |
| HPE50_RS12470 () | 2511219..2513222 | - | 2004 | Protein_2416 | prophage tail fiber N-terminal domain-containing protein | - |
| HPE50_RS12475 () | 2513287..2513886 | - | 600 | WP_001233058.1 | hypothetical protein | VF |
| HPE50_RS12480 () | 2513954..2514790 | - | 837 | Protein_2418 | DUF1983 domain-containing protein | - |
| HPE50_RS12485 () | 2514802..2515707 | - | 906 | Protein_2419 | IS3 family transposase ISEc31 | Transposase |
| HPE50_RS12490 () | 2515772..2516923 | + | 1152 | WP_001254932.1 | IS30 family transposase IS30D | Transposase |
| HPE50_RS12495 () | 2516936..2517238 | - | 303 | Protein_2421 | IS3 family transposase ISEc31 | Transposase |
| HPE50_RS12500 () | 2517289..2517723 | - | 435 | WP_001571447.1 | phage tail assembly protein T | - |
| HPE50_RS12505 () | 2517705..2518127 | - | 423 | WP_001552795.1 | phage minor tail protein G | - |
| HPE50_RS12510 () | 2518143..2518883 | - | 741 | WP_016235889.1 | phage tail protein | - |
| HPE50_RS12515 () | 2518891..2519286 | - | 396 | WP_000683145.1 | phage minor tail U family protein | - |
| HPE50_RS12520 () | 2519283..2519861 | - | 579 | WP_001520551.1 | phage tail protein | - |
| HPE50_RS12525 () | 2519916..2520269 | - | 354 | WP_000753006.1 | head-tail joining protein | - |
| HPE50_RS12530 () | 2520281..2520676 | - | 396 | WP_000158879.1 | DNA-packaging protein FI | - |
| HPE50_RS12535 () | 2520718..2521743 | - | 1026 | WP_001571334.1 | major capsid protein | - |
| HPE50_RS12540 () | 2521799..2522131 | - | 333 | WP_001345004.1 | head decoration protein | - |
| HPE50_RS12545 () | 2522141..2523460 | - | 1320 | WP_174183210.1 | S49 family peptidase | - |
| HPE50_RS12550 () | 2523441..2525042 | - | 1602 | WP_001571331.1 | phage portal protein | - |
| HPE50_RS12555 () | 2525039..2525245 | - | 207 | WP_000198149.1 | gpW family protein | - |
| HPE50_RS12560 () | 2525242..2527167 | - | 1926 | WP_151309675.1 | phage terminase large subunit family protein | - |
| HPE50_RS12565 () | 2527142..2527687 | - | 546 | WP_000453576.1 | DNA-packaging protein | - |
| HPE50_RS12570 () | 2528076..2528309 | + | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| HPE50_RS12575 () | 2528367..2528777 | + | 411 | WP_001571459.1 | DUF1398 domain-containing protein | - |
| HPE50_RS12580 () | 2528929..2529102 | - | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| HPE50_RS12585 () | 2529274..2529429 | - | 156 | WP_001309517.1 | hypothetical protein | - |
| HPE50_RS12590 () | 2529509..2529574 | - | 66 | WP_123005512.1 | hypothetical protein | - |
| HPE50_RS12595 () | 2529577..2529765 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| HPE50_RS12600 () | 2529776..2529988 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| HPE50_RS12605 () | 2530351..2530847 | - | 497 | Protein_2443 | DUF2514 domain-containing protein | - |
| HPE50_RS12610 () | 2530844..2531377 | - | 534 | WP_021563006.1 | lysozyme | - |
| HPE50_RS12615 () | 2531374..2531685 | - | 312 | WP_000189916.1 | YdfR family protein | - |
| HPE50_RS12620 () | 2531690..2531905 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| HPE50_RS12625 () | 2532659..2532874 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| HPE50_RS12630 () | 2533175..2533387 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| HPE50_RS12635 () | 2533442..2533531 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| HPE50_RS12640 () | 2533809..2534561 | - | 753 | WP_001571462.1 | antitermination protein | - |
| HPE50_RS12645 () | 2534575..2535624 | - | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| HPE50_RS12650 () | 2535626..2535904 | - | 279 | WP_032147666.1 | hypothetical protein | - |
| HPE50_RS12655 () | 2535971..2536222 | - | 252 | WP_000980988.1 | hypothetical protein | - |
| HPE50_RS12660 () | 2536439..2536594 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| HPE50_RS12665 () | 2536666..2536953 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| HPE50_RS12670 () | 2536953..2537192 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| HPE50_RS12675 () | 2537217..2537522 | + | 306 | WP_001326990.1 | hypothetical protein | - |
| HPE50_RS12680 () | 2537725..2538057 | + | 333 | WP_001301033.1 | protein FlxA | - |
| HPE50_RS12685 () | 2538494..2539807 | - | 1314 | WP_001571463.1 | ISNCY family transposase ISCARN112 | Transposase |
| HPE50_RS12690 () | 2539985..2540167 | + | 183 | WP_000955178.1 | hypothetical protein | - |
| HPE50_RS12695 () | 2541474..2541830 | - | 357 | WP_001310834.1 | class I SAM-dependent methyltransferase | - |
| HPE50_RS12700 () | 2541827..2542249 | - | 423 | WP_001151262.1 | DUF977 family protein | - |
| HPE50_RS12705 () | 2542290..2543255 | - | 966 | WP_000054512.1 | hypothetical protein | - |
| HPE50_RS12710 () | 2543236..2543757 | - | 522 | WP_000705358.1 | hypothetical protein | - |
| HPE50_RS12715 () | 2543741..2543971 | - | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| HPE50_RS12720 () | 2544055..2544462 | + | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| HPE50_RS12725 () | 2544629..2544784 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| HPE50_RS12730 () | 2544944..2545162 | + | 219 | WP_001673454.1 | hypothetical protein | - |
| HPE50_RS12735 () | 2545166..2545330 | - | 165 | WP_001296188.1 | hypothetical protein | - |
| HPE50_RS12740 () | 2545730..2545918 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| HPE50_RS12745 () | 2545915..2546106 | + | 192 | WP_001083297.1 | lysis protein YdfD | - |
| HPE50_RS12750 () | 2546199..2547326 | + | 1128 | WP_174183235.1 | exonuclease | - |
| HPE50_RS12760 () | 2548579..2549991 | + | 1413 | WP_174183237.1 | exonuclease | - |
| HPE50_RS12765 () | 2550064..2550315 | + | 252 | WP_000005552.1 | excisionase family protein | - |
| HPE50_RS12770 () | 2550350..2551630 | + | 1281 | WP_001571468.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| HPE50_RS12775 () | 2551650..2551761 | - | 112 | Protein_2477 | transporter | - |
| HPE50_RS12780 () | 2551819..2552838 | - | 1020 | WP_000836045.1 | Zn-dependent oxidoreductase | - |
| HPE50_RS12785 () | 2552850..2553860 | - | 1011 | WP_087900063.1 | D-galactonate dehydratase family protein | - |
| HPE50_RS12790 () | 2554066..2554392 | - | 327 | WP_001304355.1 | YnfA family protein | - |
| HPE50_RS12795 () | 2554527..2554868 | + | 342 | WP_000705203.1 | DUF1283 family protein | - |
| HPE50_RS12800 () | 2554903..2555463 | + | 561 | WP_001138584.1 | spermidine N1-acetyltransferase | - |
| HPE50_RS12805 () | 2555466..2556176 | - | 711 | WP_032142801.1 | YnfC family lipoprotein | - |
| HPE50_RS12810 () | 2556284..2556589 | + | 306 | WP_001571471.1 | DUF1161 domain-containing protein | - |
| HPE50_RS12815 () | 2556788..2559214 | + | 2427 | WP_000041646.1 | dimethyl sulfoxide reductase subunit A | - |
| HPE50_RS12820 () | 2559275..2561698 | + | 2424 | WP_072146081.1 | dimethyl sulfoxide reductase subunit A | - |
| HPE50_RS12825 () | 2561709..2562326 | + | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| HPE50_RS12830 () | 2562328..2563182 | + | 855 | WP_000526500.1 | dimethyl sulfoxide reductase anchor subunit | - |
| HPE50_RS12835 () | 2563225..2563839 | + | 615 | WP_000148691.1 | Tat proofreading chaperone DmsD | - |
| HPE50_RS12840 () | 2563998..2565290 | + | 1293 | WP_071586384.1 | voltage-gated ClC-type chloride channel ClcB | - |
| HPE50_RS12845 () | 2565243..2565938 | - | 696 | WP_000919226.1 | dethiobiotin synthase | - |
| HPE50_RS12850 () | 2566063..2567283 | - | 1221 | WP_000225257.1 | DNA-binding transcriptional repressor Mlc | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|