MGE detailed information
MGE type: Conjugative plasmid MGE length: 156725 bp
Accession: NZ_CP054295 Location: 1..156725 Organism: Citrobacter freundii strain IDR1800045912-01-00 Replicon: plasmid p1C157
Accession: NZ_CP054295 Location: 1..156725 Organism: Citrobacter freundii strain IDR1800045912-01-00 Replicon: plasmid p1C157
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HS089_RS23975 () | 1304..2044 | - | 741 | WP_022652310.1 | site-specific integrase | - |
| HS089_RS23980 () | 2521..2828 | + | 308 | Protein_2 | IS1 family transposase | - |
| HS089_RS23985 () | 3120..4142 | - | 1023 | WP_001572362.1 | IS110 family transposase IS1618 | Transposase |
| HS089_RS23990 () | 4649..6127 | + | 1479 | WP_022652309.1 | SulP family inorganic anion transporter | - |
| HS089_RS23995 () | 6145..6972 | + | 828 | WP_032430841.1 | universal stress protein | - |
| HS089_RS24000 () | 7054..7257 | + | 204 | WP_022652307.1 | hypothetical protein | - |
| HS089_RS24005 () | 7535..7765 | - | 231 | WP_021314637.1 | thioredoxin family protein | - |
| HS089_RS24010 () | 7779..8780 | - | 1002 | Protein_8 | permease | - |
| HS089_RS24015 () | 8937..9446 | - | 510 | WP_050483874.1 | sigma-70 family RNA polymerase sigma factor | - |
| HS089_RS24020 () | 10037..10990 | - | 954 | WP_032430842.1 | IS110 family transposase IS4321 | Transposase |
| HS089_RS24025 () | 11055..11582 | - | 528 | WP_022652301.1 | hypothetical protein | - |
| HS089_RS24030 () | 11611..12321 | - | 711 | WP_022652302.1 | Lipoprotein-releasing system ATP-binding protein LolD | VF |
| HS089_RS24035 () | 12323..13528 | - | 1206 | WP_022652303.1 | ABC transporter permease | - |
| HS089_RS24040 () | 13525..14676 | - | 1152 | WP_032430843.1 | efflux RND transporter periplasmic adaptor subunit | - |
| HS089_RS24045 () | 14673..15281 | - | 609 | WP_004393990.1 | TetR/AcrR family transcriptional regulator | - |
| HS089_RS24050 () | 15469..16473 | + | 1005 | WP_022542389.1 | IS110 family transposase IS4321 | Transposase |
| HS089_RS24055 () | 17077..17406 | + | 330 | WP_000493286.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| HS089_RS24060 () | 17387..17668 | + | 282 | WP_000780222.1 | helix-turn-helix transcriptional regulator | - |
| HS089_RS24065 () | 17946..18197 | + | 252 | Protein_19 | IS5 family transposase ISKpn26 | Transposase |
| HS089_RS24070 () | 18237..18632 | - | 396 | WP_104455936.1 | Tn3 family transposase TnpR_ISThsp9 | Transposase |
| HS089_RS24075 () | 18799..19914 | - | 1116 | WP_171277333.1 | HD-GYP domain-containing protein | - |
| HS089_RS24080 () | 20169..20549 | - | 381 | WP_001054412.1 | hypothetical protein | - |
| HS089_RS24085 () | 20546..20872 | - | 327 | WP_000091614.1 | hypothetical protein | - |
| HS089_RS24090 () | 20896..21231 | - | 336 | WP_000741275.1 | hypothetical protein | - |
| HS089_RS24095 () | 21246..21581 | - | 336 | WP_001172026.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| HS089_RS24100 () | 21583..21939 | - | 357 | WP_000182276.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| HS089_RS24105 () | 22041..22112 | + | 72 | Protein_27 | EAL domain-containing protein | - |
| HS089_RS24110 () | 22252..23016 | - | 765 | WP_001389365.1 | IS6 family transposase IS6100 | Transposase |
| HS089_RS24115 () | 23134..23202 | - | 69 | Protein_29 | EAL domain-containing protein | - |
| HS089_RS24120 () | 23523..24023 | - | 501 | WP_000376623.1 | GNAT family N-acetyltransferase | - |
| HS089_RS24125 () | 24151..24990 | - | 840 | WP_000259031.1 | Dihydropteroate synthase | ARG |
| HS089_RS24130 () | 24984..25331 | - | 348 | WP_000679427.1 | Multidrug transporter EmrE | ARG |
| HS089_RS24135 () | 25554..26006 | - | 453 | WP_001749986.1 | hypothetical protein | ARG |
| HS089_RS24140 () | 26091..26723 | - | 633 | WP_000186237.1 | Chloramphenicol acetyltransferase | VF |
| HS089_RS24145 () | 26861..27691 | - | 831 | WP_001334766.1 | Beta-lactamase OXA-1 | ARG |
| HS089_RS24150 () | 27822..28376 | - | 555 | WP_063840321.1 | Aminoglycoside N(6')-acetyltransferase type 1 | ARG |
| HS089_RS24155 () | 28668..29681 | + | 1014 | WP_182945375.1 | IS91 family transposase ISAzo26 | Transposase |
| HS089_RS24160 () | 30018..30578 | + | 561 | WP_001161490.1 | Tn3 family transposase TnpR_TnAs1 | Transposase |
| HS089_RS24165 () | 30582..33419 | + | 2838 | Protein_39 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| HS089_RS24170 () | 33447..33647 | - | 201 | Protein_40 | Tn3 family transposase | - |
| HS089_RS24175 () | 33795..34655 | - | 861 | WP_000027057.1 | Beta-lactamase TEM | ARG |
| HS089_RS24180 () | 35476..36846 | - | 1371 | WP_000971921.1 | IS1182 family transposase ISCfr1 | Transposase |
| HS089_RS24185 () | 36961..38097 | - | 1137 | WP_000080861.1 | DUF3883 domain-containing protein | - |
| HS089_RS24190 () | 38148..38375 | - | 228 | WP_000248278.1 | hypothetical protein | - |
| HS089_RS24195 () | 38399..38590 | + | 192 | WP_000951934.1 | hypothetical protein | - |
| HS089_RS24200 () | 39072..39614 | - | 543 | WP_000587837.1 | AAA family ATPase | - |
| HS089_RS24205 () | 39627..40487 | - | 861 | WP_000557454.1 | SPBc2 prophage-derived aminoglycoside N(3')-acetyltransferase-like protein YokD | ARG |
| HS089_RS24210 () | 40720..41424 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| HS089_RS24215 () | 41546..42451 | + | 906 | WP_000219391.1 | hypothetical protein | ARG |
| HS089_RS24220 () | 42448..43686 | + | 1239 | WP_000004159.1 | MFS transporter | - |
| HS089_RS24225 () | 43686..44270 | + | 585 | WP_001137892.1 | TetR family transcriptional regulator | - |
| HS089_RS24230 () | 44763..45527 | - | 765 | WP_001389365.1 | IS6 family transposase IS6100 | Transposase |
| HS089_RS24235 () | 45645..45710 | - | 66 | Protein_53 | EAL domain-containing protein | - |
| HS089_RS24240 () | 45754..46059 | - | 306 | WP_000130000.1 | hypothetical protein | Relaxase |
| HS089_RS24245 () | 46070..47275 | - | 1206 | WP_000184001.1 | chromate efflux transporter | - |
| HS089_RS24250 () | 47503..48507 | + | 1005 | WP_000427619.1 | IS110 family transposase IS5075 | Transposase |
| HS089_RS24255 () | 48689..48865 | - | 177 | WP_000954592.1 | Arm DNA-binding domain-containing protein | - |
| HS089_RS24260 () | 49195..50010 | + | 816 | WP_001043260.1 | Dihydropteroate synthase | ARG |
| HS089_RS24265 () | 50097..50339 | + | 243 | Protein_59 | phosphoglucosamine mutase | - |
| HS089_RS24270 () | 50293..50544 | - | 252 | WP_001445143.1 | hypothetical protein | - |
| HS089_RS24275 () | 50575..52068 | - | 1494 | WP_001120888.1 | IS91 family transposase ISVsa3 | Transposase |
| HS089_RS24280 () | 52279..52503 | - | 225 | WP_000743213.1 | hypothetical protein | - |
| HS089_RS24285 () | 52500..53237 | - | 738 | WP_001446887.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| HS089_RS24290 () | 53677..54381 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| HS089_RS24295 () | 54492..54857 | - | 366 | WP_001277466.1 | mercury resistance co-regulator MerD | - |
| HS089_RS24300 () | 54875..56560 | - | 1686 | WP_043907010.1 | mercury(II) reductase | - |
| HS089_RS24305 () | 56599..57024 | - | 426 | WP_000522996.1 | organomercurial transporter MerC | - |
| HS089_RS24310 () | 57052..57327 | - | 276 | WP_000732275.1 | mercury resistance system periplasmic binding protein MerP | - |
| HS089_RS24315 () | 57343..57723 | - | 381 | WP_001294654.1 | mercuric ion transporter MerT | - |
| HS089_RS24320 () | 57795..58250 | + | 456 | WP_001166628.1 | IS607 family transposase ISChh1 | Transposase |
| HS089_RS24325 () | 58344..59327 | - | 984 | WP_022652268.1 | tyrosine-type recombinase/integrase | - |
| HS089_RS24330 () | 59516..60896 | + | 1381 | Protein_72 | hypothetical protein | - |
| HS089_RS24335 () | 60893..61990 | + | 1098 | Protein_73 | hypothetical protein | - |
| HS089_RS24340 () | 62024..62992 | + | 969 | WP_013087110.1 | IS5 family transposase IS903B | Transposase |
| HS089_RS24345 () | 63018..63230 | - | 213 | WP_022652265.1 | hypothetical protein | - |
| HS089_RS24350 () | 63379..64410 | - | 1032 | WP_001395480.1 | IS630 family transposase ISEc33 | Transposase |
| HS089_RS24355 () | 64686..65216 | - | 531 | WP_008322250.1 | thermonuclease family protein | - |
| HS089_RS24360 () | 65221..65418 | - | 198 | WP_008322246.1 | hypothetical protein | - |
| HS089_RS24365 () | 65599..66621 | + | 1023 | WP_001567660.1 | IS110 family transposase ISSm1 | Transposase |
| HS089_RS24370 () | 67291..68322 | + | 1032 | WP_008322245.1 | LacI family transcriptional regulator | - |
| HS089_RS24375 () | 68609..68821 | + | 213 | Protein_81 | LacI family transcriptional regulator | - |
| HS089_RS24380 () | 68905..69927 | + | 1023 | WP_001572362.1 | IS110 family transposase IS1618 | Transposase |
| HS089_RS24385 () | 70187..70927 | + | 741 | Protein_83 | ABC transporter substrate-binding protein | - |
| HS089_RS24390 () | 70992..72524 | + | 1533 | WP_008322240.1 | Ribose import ATP-binding protein RbsA | VF |
| HS089_RS24395 () | 72511..73530 | + | 1020 | WP_004113181.1 | ribose ABC transporter permease | - |
| HS089_RS24400 () | 73608..74978 | + | 1371 | WP_008322237.1 | hypothetical protein | - |
| HS089_RS24405 () | 74975..75895 | + | 921 | WP_008322235.1 | carbohydrate kinase | - |
| HS089_RS24410 () | 76078..76247 | - | 170 | Protein_88 | DUF596 domain-containing protein | - |
| HS089_RS24415 () | 76441..76857 | - | 417 | WP_008322233.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| HS089_RS24420 () | 76854..77084 | - | 231 | WP_001261276.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| HS089_RS24425 () | 77337..78359 | - | 1023 | WP_008322227.1 | helicase UvrD | - |
| HS089_RS24430 () | 78428..79132 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| HS089_RS24435 () | 79535..79891 | + | 357 | WP_000215515.1 | cupin domain-containing protein | - |
| HS089_RS24440 () | 80180..82579 | - | 2400 | Protein_94 | Tn3 family transposase ISEc63 | Transposase |
| HS089_RS24445 () | 82643..83347 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| HS089_RS24450 () | 83401..85458 | + | 2058 | Protein_96 | Tn3 family transposase ISEc63 | Transposase |
| HS089_RS24455 () | 85492..85959 | - | 468 | Protein_97 | replication initiator protein RepA | - |
| HS089_RS24460 () | 85952..86029 | - | 78 | WP_071846009.1 | RepA leader peptide Tap | - |
| HS089_RS24465 () | 86262..86504 | - | 243 | WP_000078032.1 | replication regulatory protein RepA | - |
| HS089_RS24470 () | 86636..87199 | - | 564 | WP_047715669.1 | Phospholipase D | VF |
| HS089_RS24475 () | 87348..87701 | - | 354 | WP_047715670.1 | hypothetical protein | - |
| HS089_RS24480 () | 87743..88474 | - | 732 | WP_047715671.1 | type-F conjugative transfer system pilin acetylase TraX | - |
| HS089_RS24485 () | 88471..89037 | - | 567 | WP_047715672.1 | DUF2726 domain-containing protein | - |
| HS089_RS24490 () | 89056..94359 | - | 5304 | WP_047715673.1 | Multifunctional conjugation protein TraI | Relaxase |
| HS089_RS24495 () | 94359..96593 | - | 2235 | WP_047715674.1 | type IV conjugative transfer system coupling protein TraD | - |
| HS089_RS24500 () | 96744..97481 | - | 738 | WP_047715675.1 | complement resistance protein TraT | - |
| HS089_RS24505 () | 97657..98217 | - | 561 | WP_047715676.1 | hypothetical protein | - |
| HS089_RS24510 () | 98229..101126 | - | 2898 | WP_047715678.1 | conjugal transfer mating pair stabilization protein TraG | - |
| HS089_RS24515 () | 101128..102489 | - | 1362 | WP_032430807.1 | F-type conjugal transfer protein TraH | - |
| HS089_RS24520 () | 102489..103100 | - | 612 | WP_032430808.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| HS089_RS24525 () | 103126..103905 | - | 780 | WP_032430809.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| HS089_RS24530 () | 103902..105755 | - | 1854 | WP_032430810.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| HS089_RS24535 () | 105752..106366 | - | 615 | WP_032430811.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| HS089_RS24540 () | 106363..106731 | - | 369 | WP_032430812.1 | hypothetical protein | - |
| HS089_RS24545 () | 106742..107737 | - | 996 | WP_032430813.1 | conjugal transfer pilus assembly protein TraU | - |
| HS089_RS24550 () | 107734..108369 | - | 636 | WP_032430814.1 | type-F conjugative transfer system protein TraW | - |
| HS089_RS24555 () | 108369..108833 | - | 465 | WP_032430815.1 | type-F conjugative transfer system protein TrbI | - |
| HS089_RS24560 () | 108830..111421 | - | 2592 | WP_032430816.1 | type IV secretion system protein TraC | - |
| HS089_RS24565 () | 111432..112031 | - | 600 | WP_047715683.1 | type IV conjugative transfer system lipoprotein TraV | - |
| HS089_RS24570 () | 112049..112501 | - | 453 | WP_032430818.1 | hypothetical protein | - |
| HS089_RS24575 () | 112514..112733 | - | 220 | Protein_121 | TraR/DksA C4-type zinc finger protein | - |
| HS089_RS24580 () | 112843..114204 | - | 1362 | WP_032430819.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| HS089_RS24585 () | 114191..114931 | - | 741 | WP_032430820.1 | type-F conjugative transfer system secretin TraK | - |
| HS089_RS24590 () | 114921..115484 | - | 564 | WP_032430821.1 | type IV conjugative transfer system protein TraE | - |
| HS089_RS24595 () | 115504..115809 | - | 306 | WP_000398849.1 | type IV conjugative transfer system protein TraL | - |
| HS089_RS24600 () | 115811..116170 | - | 360 | WP_032430822.1 | type IV conjugative transfer system pilin TraA | - |
| HS089_RS24605 () | 116288..116521 | - | 234 | WP_032430823.1 | TraY domain-containing protein | - |
| HS089_RS24610 () | 116727..117176 | - | 450 | WP_020833561.1 | helix-turn-helix domain-containing protein | - |
| HS089_RS24615 () | 117473..117856 | - | 384 | WP_015062650.1 | relaxosome protein TraM | - |
| HS089_RS24620 () | 118325..118780 | + | 456 | WP_032430824.1 | hypothetical protein | VF |
| HS089_RS24625 () | 118791..119321 | - | 531 | WP_032430825.1 | antirestriction protein | - |
| HS089_RS24630 () | 119968..120801 | - | 834 | WP_032430826.1 | type I restriction-modification system subunit M | - |
| HS089_RS24635 () | 120848..120994 | - | 147 | WP_001159045.1 | hypothetical protein | - |
| HS089_RS24640 () | 121089..121436 | - | 348 | WP_032430827.1 | hypothetical protein | - |
| HS089_RS24645 () | 121493..121897 | - | 405 | WP_032430828.1 | hypothetical protein | - |
| HS089_RS24650 () | 122623..122997 | - | 375 | WP_020833566.1 | hypothetical protein | - |
| HS089_RS24655 () | 123351..123704 | - | 354 | WP_020833567.1 | hypothetical protein | - |
| HS089_RS24660 () | 123701..124429 | - | 729 | WP_032430829.1 | plasmid SOS inhibition protein A | - |
| HS089_RS24665 () | 124426..124860 | - | 435 | WP_086538015.1 | conjugation system SOS inhibitor PsiB | - |
| HS089_RS24670 () | 124901..126934 | - | 2034 | Protein_140 | ParB/RepB/Spo0J family partition protein | - |
| HS089_RS24675 () | 127005..127247 | - | 243 | WP_032430848.1 | DUF905 domain-containing protein | - |
| HS089_RS24680 () | 127300..127854 | - | 555 | WP_020842505.1 | single-stranded DNA-binding protein | - |
| HS089_RS24685 () | 128185..128406 | + | 222 | WP_015062665.1 | hypothetical protein | - |
| HS089_RS24690 () | 128529..128846 | - | 318 | WP_032430831.1 | hypothetical protein | - |
| HS089_RS24695 () | 128881..129135 | - | 255 | WP_072200699.1 | DNA polymerase III subunit theta | - |
| HS089_RS24700 () | 129327..129518 | - | 192 | WP_022652248.1 | hypothetical protein | - |
| HS089_RS24705 () | 129561..130067 | - | 507 | WP_015062672.1 | antirestriction protein ArdA | - |
| HS089_RS24710 () | 130474..131253 | - | 780 | WP_032430832.1 | hypothetical protein | - |
| HS089_RS24715 () | 131307..131726 | - | 420 | WP_016479994.1 | DUF1380 domain-containing protein | - |
| HS089_RS24720 () | 131737..131958 | - | 222 | WP_022652245.1 | hypothetical protein | - |
| HS089_RS24725 () | 131958..132635 | - | 678 | WP_032430833.1 | DNA methylase | - |
| HS089_RS24730 () | 132995..133666 | + | 672 | WP_022652243.1 | SOS response-associated peptidase family protein | - |
| HS089_RS24735 () | 133846..134268 | + | 423 | WP_022652242.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| HS089_RS24740 () | 134268..134495 | + | 228 | Protein_154 | DNA polymerase V subunit UmuC | - |
| HS089_RS24745 () | 134569..135573 | + | 1005 | Protein_155 | tyrosine-type recombinase/integrase | - |
| HS089_RS24750 () | 135557..137683 | + | 2127 | WP_022652239.1 | tyrosine-type recombinase/integrase | - |
| HS089_RS24755 () | 137832..139046 | + | 1215 | WP_022652238.1 | type II site-specific deoxyribonuclease | - |
| HS089_RS24760 () | 139080..140483 | - | 1404 | WP_072200700.1 | DNA cytosine methyltransferase | - |
| HS089_RS24765 () | 140817..142955 | - | 2139 | WP_022652236.1 | hypothetical protein | - |
| HS089_RS24770 () | 143209..144251 | + | 1043 | Protein_160 | translesion error-prone DNA polymerase V subunit UmuC | - |
| HS089_RS24775 () | 144984..145949 | - | 966 | WP_022652318.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| HS089_RS24780 () | 145949..147115 | - | 1167 | WP_022652317.1 | plasmid-partitioning protein SopA | - |
| HS089_RS24785 () | 147486..147728 | + | 243 | Protein_163 | IS3 family transposase ISEhe3 | Transposase |
| HS089_RS24790 () | 147959..149299 | + | 1341 | WP_008786676.1 | IS110 family transposase ISWpi13 | Transposase |
| HS089_RS24795 () | 149356..150891 | - | 1536 | WP_032430836.1 | IS66 family transposase ISSgsp1 | Transposase |
| HS089_RS24800 () | 150941..151288 | - | 348 | WP_000609174.1 | IS66 family transposase ISCfr14 | Transposase |
| HS089_RS24805 () | 151285..151668 | - | 384 | WP_001201739.1 | IS66 family transposase IS682 | Transposase |
| HS089_RS24810 () | 151777..152928 | - | 1152 | WP_022652315.1 | IS30 family transposase IS30D | Transposase |
| HS089_RS24815 () | 152993..153889 | + | 897 | Protein_169 | IS3 family transposase ISEhe3 | Transposase |
| HS089_RS24820 () | 154030..154923 | - | 894 | WP_086538014.1 | IS5 family transposase IS5D | Transposase |
| HS089_RS24825 () | 155055..155585 | - | 531 | WP_022652313.1 | GNAT family N-acetyltransferase | - |
| HS089_RS24830 () | 155589..155858 | - | 270 | WP_022652312.1 | DUF1778 domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|