MGE detailed information
MGE type: Prophage MGE length: 23828 bp
Accession: NZ_CP054264 Location: 4671275..4695102 Organism: Pseudomonas putida strain A0_F0_I1 Replicon: chromosome
Accession: NZ_CP054264 Location: 4671275..4695102 Organism: Pseudomonas putida strain A0_F0_I1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HG554_RS21530 (HG554_21525) | 4666281..4668134 | + | 1854 | WP_010954903.1 | NADH-quinone oxidoreductase subunit L | - |
| HG554_RS21535 (HG554_21530) | 4668175..4669707 | + | 1533 | WP_010954904.1 | NADH-quinone oxidoreductase subunit M | - |
| HG554_RS21540 (HG554_21535) | 4669715..4671184 | + | 1470 | WP_010954905.1 | NADH-quinone oxidoreductase subunit NuoN | - |
| HG554_RS21545 (HG554_21540) | 4671275..4671538 | - | 264 | WP_010954906.1 | ogr/Delta-like zinc finger family protein | - |
| HG554_RS21550 (HG554_21545) | 4671718..4672095 | + | 378 | WP_010954907.1 | helix-turn-helix domain-containing protein | - |
| HG554_RS21555 (HG554_21550) | 4672092..4672454 | - | 363 | WP_010954908.1 | hypothetical protein | - |
| HG554_RS21560 (HG554_21555) | 4672447..4672794 | - | 348 | WP_010954909.1 | head completion/stabilization protein | - |
| HG554_RS21565 (HG554_21560) | 4672806..4673054 | - | 249 | WP_003251454.1 | hypothetical protein | VF |
| HG554_RS21570 (HG554_21565) | 4673275..4675347 | + | 2073 | WP_010954910.1 | TonB-dependent receptor | - |
| HG554_RS21575 (HG554_21570) | 4675451..4676011 | - | 561 | WP_003251456.1 | class I chromate reductase ChrR | - |
| HG554_RS21580 (HG554_21575) | 4676168..4676386 | + | 219 | WP_010954911.1 | hypothetical protein | - |
| HG554_RS21585 (HG554_21580) | 4676370..4678619 | - | 2250 | WP_049588234.1 | Orn/Lys/Arg decarboxylase N-terminal domain-containing protein | - |
| HG554_RS21590 (HG554_21585) | 4678747..4679505 | - | 759 | WP_010954912.1 | DNA polymerase III subunit epsilon | - |
| HG554_RS21595 (HG554_21590) | 4679556..4680002 | - | 447 | WP_003251460.1 | ribonuclease HI | - |
| HG554_RS21600 (HG554_21595) | 4680018..4680791 | - | 774 | WP_003251461.1 | methyltransferase domain-containing protein | - |
| HG554_RS21605 (HG554_21600) | 4680877..4681656 | + | 780 | WP_010954914.1 | hydroxyacylglutathione hydrolase | - |
| HG554_RS21610 (HG554_21605) | 4681757..4683187 | + | 1431 | WP_010954915.1 | hypothetical protein | VF |
| HG554_RS21615 (HG554_21610) | 4683408..4685237 | + | 1830 | WP_010954916.1 | extracellular solute-binding protein | - |
| HG554_RS21620 (HG554_21615) | 4685234..4687069 | + | 1836 | WP_010954917.1 | extracellular solute-binding protein | - |
| HG554_RS21625 (HG554_21620) | 4687071..4688144 | + | 1074 | WP_010954918.1 | microcin C ABC transporter permease YejB | - |
| HG554_RS21630 (HG554_21625) | 4688146..4689165 | + | 1020 | WP_010954919.1 | ABC transporter permease | - |
| HG554_RS21635 (HG554_21630) | 4689167..4690771 | + | 1605 | WP_010954920.1 | hypothetical protein | VF |
| HG554_RS21640 (HG554_21635) | 4690919..4691386 | + | 468 | WP_049588231.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| HG554_RS21645 (HG554_21640) | 4691383..4691958 | + | 576 | WP_010954922.1 | PIN domain-containing protein | Toxin Detail |
| HG554_RS21650 (HG554_21645) | 4692172..4695102 | + | 2931 | WP_049588229.1 | aminotransferase | - |
| HG554_RS21655 (HG554_21650) | 4695106..4696329 | - | 1224 | WP_010954925.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| HG554_RS21660 (HG554_21655) | 4696420..4697325 | + | 906 | WP_010954926.1 | LysR family transcriptional regulator | - |
| HG554_RS21665 (HG554_21660) | 4697387..4698082 | - | 696 | WP_010954927.1 | response regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Pseudomonas putida KT2440 | Prophage | TA313, TA20571 | NC_002947 | 4671229..4695056 | 0 |