MGE detailed information
MGE type: Genomic_island MGE length: 43973 bp
Accession: NZ_CP054264 Location: 2816293..2860265 Organism: Pseudomonas putida strain A0_F0_I1 Replicon: chromosome
Accession: NZ_CP054264 Location: 2816293..2860265 Organism: Pseudomonas putida strain A0_F0_I1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HG554_RS12900 (HG554_12905) | 2811559..2812110 | + | 552 | WP_012052879.1 | translation initiation factor IF-3 | - |
| HG554_RS12905 (HG554_12910) | 2812171..2812365 | + | 195 | WP_003250667.1 | 50S ribosomal protein L35 | - |
| HG554_RS12910 (HG554_12915) | 2812393..2812749 | + | 357 | WP_003250671.1 | 50S ribosomal protein L20 | - |
| HG554_RS12915 (HG554_12920) | 2812859..2813875 | + | 1017 | WP_003250674.1 | phenylalanine--tRNA ligase subunit alpha | - |
| HG554_RS12920 (HG554_12925) | 2813907..2816288 | + | 2382 | WP_010953410.1 | phenylalanine--tRNA ligase subunit beta | - |
| HG554_RS12925 (HG554_12930) | 2816293..2816595 | + | 303 | WP_003250679.1 | integration host factor subunit alpha | - |
| HG554_RS12930 (HG554_12935) | 2816576..2816932 | + | 357 | WP_003250681.1 | MerR family transcriptional regulator | - |
| HG554_RS12940 (HG554_12945) | 2817246..2818088 | - | 843 | WP_023464844.1 | hypothetical protein | - |
| HG554_RS12945 (HG554_12950) | 2818693..2818947 | + | 255 | WP_023464843.1 | AlpA family transcriptional regulator | - |
| HG554_RS12950 (HG554_12955) | 2819274..2820242 | + | 969 | WP_028699792.1 | inovirus-type Gp2 protein | - |
| HG554_RS12955 (HG554_12960) | 2820754..2821374 | - | 621 | WP_010487132.1 | glutathione S-transferase | - |
| HG554_RS12960 (HG554_12965) | 2821765..2822358 | + | 594 | WP_010953412.1 | TetR/AcrR family transcriptional regulator | - |
| HG554_RS12965 (HG554_12970) | 2822471..2823505 | + | 1035 | WP_010953413.1 | NADP-dependent oxidoreductase | - |
| HG554_RS12970 (HG554_12975) | 2823626..2823868 | + | 243 | WP_004574300.1 | hypothetical protein | - |
| HG554_RS12975 (HG554_12980) | 2823968..2824429 | + | 462 | WP_010953414.1 | (2Fe-2S)-binding protein | - |
| HG554_RS12980 (HG554_12985) | 2824431..2826623 | + | 2193 | WP_010953415.1 | molybdopterin-dependent oxidoreductase | - |
| HG554_RS12985 (HG554_12990) | 2826634..2827854 | + | 1221 | WP_049587641.1 | cytochrome c | - |
| HG554_RS12990 (HG554_12995) | 2827868..2829076 | + | 1209 | WP_010953417.1 | XdhC/CoxI family protein | - |
| HG554_RS12995 (HG554_13000) | 2829105..2829443 | + | 339 | WP_004574290.1 | putative quinol monooxygenase | - |
| HG554_RS13000 (HG554_13005) | 2829440..2830408 | + | 969 | WP_010953418.1 | radical SAM protein | - |
| HG554_RS13005 (HG554_13010) | 2830386..2830985 | - | 600 | WP_010953419.1 | nucleotidyltransferase family protein | - |
| HG554_RS13010 (HG554_13015) | 2831268..2831573 | - | 306 | WP_010953420.1 | helix-turn-helix transcriptional regulator | - |
| HG554_RS13015 (HG554_13020) | 2831712..2832695 | - | 984 | WP_010953421.1 | LLM class oxidoreductase | - |
| HG554_RS13020 (HG554_13025) | 2832762..2833886 | - | 1125 | WP_010953422.1 | alkene reductase | - |
| HG554_RS13025 (HG554_13030) | 2833949..2835448 | - | 1500 | WP_024765054.1 | aldehyde dehydrogenase family protein | - |
| HG554_RS13030 (HG554_13035) | 2835700..2837091 | - | 1392 | WP_010487163.1 | NAD-dependent succinate-semialdehyde dehydrogenase | - |
| HG554_RS13035 (HG554_13040) | 2837274..2838374 | - | 1101 | WP_010953424.1 | NADH:flavin oxidoreductase/NADH oxidase | - |
| HG554_RS13040 (HG554_13045) | 2838741..2839565 | - | 825 | WP_010953425.1 | NADPH-dependent oxidoreductase | - |
| HG554_RS13045 (HG554_13050) | 2839635..2839937 | - | 303 | WP_010487168.1 | DUF1330 domain-containing protein | - |
| HG554_RS13050 (HG554_13055) | 2839947..2840624 | - | 678 | WP_010953426.1 | type 1 glutamine amidotransferase domain-containing protein | - |
| HG554_RS13055 (HG554_13060) | 2840707..2841864 | - | 1158 | WP_010953427.1 | iron-containing alcohol dehydrogenase | - |
| HG554_RS13060 (HG554_13065) | 2842305..2842664 | - | 360 | Protein_2544 | DNA repair protein RadC | - |
| HG554_RS13065 (HG554_13070) | 2842636..2843586 | - | 951 | WP_031299400.1 | hypothetical protein | - |
| HG554_RS13070 (HG554_13075) | 2843679..2844683 | - | 1005 | WP_010953429.1 | YqaJ viral recombinase family protein | - |
| HG554_RS13075 (HG554_13080) | 2844763..2845731 | - | 969 | WP_031299399.1 | DUF932 domain-containing protein | - |
| HG554_RS13080 (HG554_13085) | 2845829..2846158 | - | 330 | WP_010953431.1 | hypothetical protein | - |
| HG554_RS13085 (HG554_13090) | 2846363..2846608 | + | 246 | WP_010953432.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| HG554_RS13090 (HG554_13095) | 2846733..2847005 | + | 273 | WP_010953433.1 | CopG family ribbon-helix-helix protein | Antitoxin Detail |
| HG554_RS13095 (HG554_13100) | 2846993..2847286 | + | 294 | WP_010953434.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| HG554_RS13100 (HG554_13105) | 2847280..2848689 | - | 1410 | WP_010953435.1 | hypothetical protein ; Integrase | Integrase |
| HG554_RS13105 (HG554_13110) | 2849212..2850138 | - | 927 | WP_010953436.1 | hypothetical protein | VF |
| HG554_RS13110 (HG554_13115) | 2850252..2850983 | + | 732 | WP_010953437.1 | hypothetical protein | VF |
| HG554_RS13115 (HG554_13120) | 2851053..2851262 | + | 210 | WP_010953438.1 | 4-oxalocrotonate tautomerase family protein | - |
| HG554_RS13120 (HG554_13125) | 2851259..2851471 | + | 213 | WP_061405625.1 | hypothetical protein | - |
| HG554_RS13125 (HG554_13130) | 2851614..2852132 | + | 519 | WP_049587643.1 | DUF1993 domain-containing protein | - |
| HG554_RS13130 (HG554_13135) | 2852337..2853374 | - | 1038 | WP_010953439.1 | sensor domain-containing diguanylate cyclase | - |
| HG554_RS13135 (HG554_13140) | 2853746..2854231 | + | 486 | WP_049587645.1 | DUF2165 domain-containing protein | - |
| HG554_RS13140 (HG554_13145) | 2854277..2854993 | + | 717 | WP_010953441.1 | SDR family oxidoreductase | - |
| HG554_RS13145 (HG554_13150) | 2855165..2855428 | - | 264 | WP_049587647.1 | DUF3077 domain-containing protein | - |
| HG554_RS13150 (HG554_13155) | 2855578..2855820 | - | 243 | WP_049587650.1 | hypothetical protein | - |
| HG554_RS13155 (HG554_13160) | 2857287..2857745 | + | 459 | WP_079732514.1 | HIT family protein | - |
| HG554_RS13160 (HG554_13165) | 2858433..2858612 | - | 180 | WP_049587653.1 | hypothetical protein | - |
| HG554_RS13165 (HG554_13170) | 2858813..2859226 | + | 414 | WP_010953445.1 | DUF393 domain-containing protein | - |
| HG554_RS13170 (HG554_13175) | 2859211..2859771 | + | 561 | WP_010953446.1 | GTP cyclohydrolase I FolE | - |
| HG554_RS13175 (HG554_13180) | 2859807..2860265 | + | 459 | WP_049587655.1 | DUF3429 domain-containing protein | - |
| HG554_RS13180 (HG554_13185) | 2860289..2861374 | - | 1086 | WP_010953447.1 | 4-oxalomesaconate tautomerase | - |
| HG554_RS13185 (HG554_13190) | 2861377..2862093 | - | 717 | WP_010953448.1 | 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase | - |
| HG554_RS13190 (HG554_13195) | 2862090..2862866 | - | 777 | WP_010953449.1 | 4-oxalmesaconate hydratase | - |
| HG554_RS13195 (HG554_13200) | 2862984..2864177 | + | 1194 | WP_010953450.1 | LysR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|