MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 114633 bp
Accession: NZ_CP054257 Location: 19890..134522 Organism: Treponema parvum strain ATCC 700773 Replicon: chromosome
Accession: NZ_CP054257 Location: 19890..134522 Organism: Treponema parvum strain ATCC 700773 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HRI96_RS00060 (HRI96_00060) | 15063..16862 | + | 1800 | WP_210117529.1 | phosphoenolpyruvate-utilizing N-terminal domain-containing protein | - |
| HRI96_RS00065 (HRI96_00065) | 16875..18398 | + | 1524 | WP_210117530.1 | ribosome biogenesis GTPase Der | - |
| HRI96_RS00070 (HRI96_00070) | 18398..18754 | + | 357 | WP_210117531.1 | MerR family transcriptional regulator | - |
| HRI96_RS00075 (HRI96_00075) | 18741..20135 | + | 1395 | WP_210117532.1 | small ribosomal subunit Rsm22 family protein | - |
| HRI96_RS00080 (HRI96_00080) | 20223..24446 | - | 4224 | WP_210117533.1 | Carbamoyl-phosphate synthase large chain | VF |
| HRI96_RS00085 (HRI96_00085) | 24446..25765 | - | 1320 | WP_210117534.1 | Carbamoyl-phosphate synthase small chain | VF |
| HRI96_RS00090 (HRI96_00090) | 26016..26273 | + | 258 | WP_210117535.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
| HRI96_RS00095 (HRI96_00095) | 26276..26539 | + | 264 | WP_210117536.1 | Txe/YoeB family addiction module toxin | - |
| HRI96_RS00100 (HRI96_00100) | 26617..27189 | + | 573 | WP_210117537.1 | hypothetical protein | - |
| HRI96_RS11820 | 27662..28159 | + | 498 | Protein_20 | IS91 family transposase ISTha3 | Transposase |
| HRI96_RS11825 | 28360..28674 | + | 315 | WP_275946059.1 | IS91 family transposase ISTha3 | Transposase |
| HRI96_RS00110 (HRI96_00110) | 28872..29087 | + | 216 | WP_210117538.1 | hypothetical protein | - |
| HRI96_RS00115 (HRI96_00115) | 29094..29429 | + | 336 | WP_210117539.1 | hypothetical protein | - |
| HRI96_RS00120 (HRI96_00120) | 29650..30759 | + | 1110 | WP_210117540.1 | IS110 family transposase ISWpi14 | Transposase |
| HRI96_RS00125 (HRI96_00125) | 30808..31200 | + | 393 | WP_210117541.1 | hypothetical protein | - |
| HRI96_RS00130 (HRI96_00130) | 31436..31654 | + | 219 | WP_210117542.1 | hypothetical protein | - |
| HRI96_RS00135 (HRI96_00135) | 31767..32099 | + | 333 | WP_210117543.1 | hypothetical protein | - |
| HRI96_RS00140 (HRI96_00140) | 32263..33096 | + | 834 | WP_010957063.1 | hypothetical protein | - |
| HRI96_RS00145 (HRI96_00145) | 33197..33829 | + | 633 | WP_210117544.1 | GyrI-like domain-containing protein | - |
| HRI96_RS00150 (HRI96_00150) | 33881..34078 | + | 198 | WP_210117545.1 | hypothetical protein | - |
| HRI96_RS00155 (HRI96_00155) | 34116..34406 | + | 291 | WP_256729245.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| HRI96_RS00160 (HRI96_00160) | 34952..35233 | + | 282 | WP_210117546.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| HRI96_RS00165 (HRI96_00165) | 35208..35531 | + | 324 | WP_210117547.1 | HigA family addiction module antitoxin | - |
| HRI96_RS00170 (HRI96_00170) | 35847..36380 | + | 534 | WP_210117548.1 | DUF2271 domain-containing protein | - |
| HRI96_RS00175 (HRI96_00175) | 36403..36864 | + | 462 | WP_210117549.1 | flavodoxin domain-containing protein | - |
| HRI96_RS00180 (HRI96_00180) | 37117..38211 | - | 1095 | WP_210117550.1 | LacI family DNA-binding transcriptional regulator | - |
| HRI96_RS00185 | 38242..38490 | - | 249 | WP_256729336.1 | hypothetical protein | - |
| HRI96_RS00190 (HRI96_00190) | 38659..39627 | - | 969 | WP_256729246.1 | Gfo/Idh/MocA family oxidoreductase | - |
| HRI96_RS00195 (HRI96_00195) | 39628..40992 | - | 1365 | WP_256729247.1 | hypothetical protein | - |
| HRI96_RS00200 (HRI96_00200) | 40973..42001 | - | 1029 | WP_210117552.1 | aldose 1-epimerase family protein | - |
| HRI96_RS00205 (HRI96_00205) | 42011..42418 | - | 408 | WP_256729337.1 | RbsD/FucU domain-containing protein | - |
| HRI96_RS00210 (HRI96_00210) | 42545..43501 | - | 957 | WP_210117554.1 | substrate-binding domain-containing protein | - |
| HRI96_RS00215 (HRI96_00215) | 43555..44517 | - | 963 | WP_210117555.1 | ABC transporter permease | - |
| HRI96_RS00220 (HRI96_00220) | 44517..46031 | - | 1515 | WP_256729248.1 | Ribose import ATP-binding protein RbsA | VF |
| HRI96_RS00225 (HRI96_00225) | 46058..47269 | - | 1212 | WP_210117556.1 | hypothetical protein | - |
| HRI96_RS00230 (HRI96_00230) | 47706..49226 | + | 1521 | WP_210117557.1 | FGGY-family carbohydrate kinase | - |
| HRI96_RS00235 (HRI96_00235) | 49388..49897 | + | 510 | WP_210117558.1 | RraA family protein | - |
| HRI96_RS00240 (HRI96_00240) | 50158..50451 | - | 294 | WP_210117559.1 | YhbY family RNA-binding protein | - |
| HRI96_RS00245 (HRI96_00245) | 50474..51511 | - | 1038 | WP_210117560.1 | aspartate--ammonia ligase | - |
| HRI96_RS00250 (HRI96_00250) | 51790..52671 | + | 882 | WP_256729249.1 | FAD-dependent oxidoreductase | - |
| HRI96_RS00255 (HRI96_00255) | 52668..53513 | + | 846 | WP_210117561.1 | transporter substrate-binding domain-containing protein | - |
| HRI96_RS00260 (HRI96_00260) | 53526..54263 | + | 738 | WP_210117562.1 | amino acid ABC transporter permease | - |
| HRI96_RS00265 (HRI96_00265) | 54254..54949 | + | 696 | WP_210117563.1 | amino acid ABC transporter permease | - |
| HRI96_RS00270 (HRI96_00270) | 55104..55631 | - | 528 | WP_210117564.1 | hypothetical protein | - |
| HRI96_RS00275 (HRI96_00275) | 55618..56172 | - | 555 | WP_210117565.1 | Gx transporter family protein | - |
| HRI96_RS00280 (HRI96_00280) | 56256..57203 | + | 948 | WP_210117566.1 | DMT family transporter | - |
| HRI96_RS00285 (HRI96_00285) | 57362..58309 | - | 948 | WP_210117567.1 | AEC family transporter | - |
| HRI96_RS00290 (HRI96_00290) | 58446..59729 | - | 1284 | WP_210117568.1 | TRAP transporter large permease | - |
| HRI96_RS00295 (HRI96_00295) | 59735..60316 | - | 582 | WP_210117569.1 | TRAP transporter small permease subunit | - |
| HRI96_RS00300 (HRI96_00300) | 60318..61343 | - | 1026 | WP_210117570.1 | TRAP transporter substrate-binding protein | - |
| HRI96_RS00305 (HRI96_00305) | 61500..62267 | - | 768 | WP_210117571.1 | response regulator | - |
| HRI96_RS00310 (HRI96_00310) | 62264..63703 | - | 1440 | WP_210117572.1 | Sensor histidine kinase YpdA | VF |
| HRI96_RS00315 (HRI96_00315) | 63700..64605 | - | 906 | WP_210117573.1 | TRAP transporter substrate-binding protein DctP | - |
| HRI96_RS00320 (HRI96_00320) | 64748..65344 | + | 597 | WP_210117574.1 | 30S ribosomal protein S4 | - |
| HRI96_RS00325 (HRI96_00325) | 65485..66480 | + | 996 | WP_256729250.1 | LacI family DNA-binding transcriptional regulator | - |
| HRI96_RS00330 (HRI96_00330) | 66763..68355 | + | 1593 | WP_210117575.1 | Mannosylglucosyl-3-phosphoglycerate phosphatase | VF |
| HRI96_RS00335 (HRI96_00335) | 68399..69484 | - | 1086 | WP_210117576.1 | ATP-dependent 6-phosphofructokinase | - |
| HRI96_RS00340 (HRI96_00340) | 69602..72232 | + | 2631 | WP_210117577.1 | DNA translocase FtsK | VF |
| HRI96_RS00345 (HRI96_00345) | 72322..72636 | - | 315 | WP_210117578.1 | isoamylase early set domain-containing protein | - |
| HRI96_RS00350 (HRI96_00350) | 72901..74070 | + | 1170 | WP_210117579.1 | methionine adenosyltransferase | - |
| HRI96_RS00355 (HRI96_00355) | 74076..74720 | + | 645 | WP_210117580.1 | endonuclease III | - |
| HRI96_RS00360 (HRI96_00360) | 74724..75632 | + | 909 | WP_210117581.1 | mechanosensitive ion channel family protein | - |
| HRI96_RS00365 (HRI96_00365) | 75684..77195 | - | 1512 | WP_210117582.1 | phosphomannomutase/phosphoglucomutase | - |
| HRI96_RS00370 (HRI96_00370) | 77573..79480 | + | 1908 | WP_210117583.1 | Long-chain-fatty-acid--CoA ligase FadD15 | VF |
| HRI96_RS00375 (HRI96_00375) | 79497..80048 | + | 552 | WP_210117584.1 | DUF3261 domain-containing protein | - |
| HRI96_RS00380 (HRI96_00380) | 80122..81930 | - | 1809 | WP_210117585.1 | FAD-dependent oxidoreductase | - |
| HRI96_RS00385 (HRI96_00385) | 82171..83619 | + | 1449 | WP_210117586.1 | Na+/H+ antiporter NhaC family protein | - |
| HRI96_RS00390 (HRI96_00390) | 83642..84403 | + | 762 | WP_210117587.1 | alpha/beta hydrolase family protein | - |
| HRI96_RS00395 (HRI96_00395) | 84429..85760 | + | 1332 | WP_210117588.1 | D-serine dehydratase ; Integrase | Integrase |
| HRI96_RS00400 (HRI96_00400) | 85817..86371 | - | 555 | WP_210117589.1 | HTH-type transcriptional regulator PuuR | VF |
| HRI96_RS00405 (HRI96_00405) | 86432..87328 | - | 897 | WP_210117590.1 | hypothetical protein | - |
| HRI96_RS00410 (HRI96_00410) | 87517..89481 | + | 1965 | WP_210117591.1 | TRAP transporter permease | - |
| HRI96_RS00415 (HRI96_00415) | 89842..90828 | + | 987 | WP_210117592.1 | TAXI family TRAP transporter solute-binding subunit | - |
| HRI96_RS00420 (HRI96_00420) | 91017..91784 | + | 768 | WP_210117593.1 | AraC family transcriptional regulator | - |
| HRI96_RS00425 (HRI96_00425) | 92031..93203 | + | 1173 | WP_210117594.1 | alpha/beta fold hydrolase | - |
| HRI96_RS00430 (HRI96_00430) | 93272..95365 | - | 2094 | WP_210117595.1 | methyl-accepting chemotaxis protein | - |
| HRI96_RS00435 (HRI96_00435) | 95672..96379 | + | 708 | WP_210117596.1 | HTH-type transcriptional regulator MtrR | VF |
| HRI96_RS00440 (HRI96_00440) | 96643..98427 | + | 1785 | WP_210117597.1 | Putative multidrug export ATP-binding/permease protein | VF |
| HRI96_RS00445 (HRI96_00445) | 98568..98891 | + | 324 | WP_016521278.1 | hypothetical protein | - |
| HRI96_RS00450 (HRI96_00450) | 99032..99286 | + | 255 | Protein_90 | isoprenylcysteine carboxylmethyltransferase family protein | - |
| HRI96_RS00455 (HRI96_00455) | 99289..101208 | + | 1920 | WP_210117598.1 | Iron import ATP-binding/permease protein IrtA | VF |
| HRI96_RS00460 (HRI96_00460) | 101268..102014 | + | 747 | WP_210117599.1 | alpha/beta hydrolase | - |
| HRI96_RS00465 (HRI96_00465) | 102148..102285 | - | 138 | Protein_93 | MATE family efflux transporter | - |
| HRI96_RS00470 (HRI96_00470) | 102339..102929 | - | 591 | WP_210117600.1 | TetR/AcrR family transcriptional regulator | - |
| HRI96_RS00475 (HRI96_00475) | 103115..103543 | + | 429 | WP_210117601.1 | VOC family protein | - |
| HRI96_RS00480 (HRI96_00480) | 103752..104393 | + | 642 | WP_210117602.1 | TetR/AcrR family transcriptional regulator | - |
| HRI96_RS00485 (HRI96_00485) | 104514..106250 | + | 1737 | WP_210117603.1 | Iron import ATP-binding/permease protein IrtA | VF |
| HRI96_RS00490 (HRI96_00490) | 106253..107971 | + | 1719 | WP_210117604.1 | Heterocyst differentiation ATP-binding protein HepA | VF |
| HRI96_RS11700 | 108032..108931 | + | 900 | WP_256729251.1 | ABC transporter ATP-binding protein | - |
| HRI96_RS11705 | 108936..109910 | + | 975 | WP_256729252.1 | Lipid A export ATP-binding/permease protein MsbA | VF |
| HRI96_RS00500 (HRI96_00500) | 110370..111710 | + | 1341 | WP_210117605.1 | AAA family ATPase | - |
| HRI96_RS00505 (HRI96_00505) | 111789..112313 | + | 525 | WP_210117606.1 | aldo/keto reductase | - |
| HRI96_RS00510 (HRI96_00510) | 112405..113055 | + | 651 | WP_210117607.1 | HEAT repeat domain-containing protein | - |
| HRI96_RS00515 (HRI96_00515) | 113245..113664 | + | 420 | WP_256729253.1 | hypothetical protein | - |
| HRI96_RS11830 (HRI96_00520) | 113939..114508 | + | 570 | WP_210117608.1 | Maltose O-acetyltransferase | VF |
| HRI96_RS00525 (HRI96_00530) | 114776..115549 | + | 774 | WP_256729254.1 | nucleoside phosphorylase | - |
| HRI96_RS00530 (HRI96_00535) | 115999..116283 | + | 285 | WP_210117609.1 | DUF4491 family protein | - |
| HRI96_RS00535 (HRI96_00540) | 116364..116774 | + | 411 | WP_210117610.1 | EamA family transporter | - |
| HRI96_RS00540 (HRI96_00545) | 117013..117489 | + | 477 | WP_210117611.1 | pyridoxamine 5'-phosphate oxidase family protein | - |
| HRI96_RS00545 (HRI96_00550) | 117492..118004 | + | 513 | WP_210117612.1 | hypothetical protein | - |
| HRI96_RS00550 (HRI96_00555) | 118072..118620 | + | 549 | WP_256729255.1 | isoprenylcysteine carboxylmethyltransferase family protein | - |
| HRI96_RS00555 (HRI96_00560) | 118717..119550 | + | 834 | WP_210117613.1 | class I SAM-dependent methyltransferase | - |
| HRI96_RS00560 (HRI96_00565) | 119528..120223 | + | 696 | WP_210117614.1 | hypothetical protein | - |
| HRI96_RS00565 (HRI96_00570) | 120247..120519 | + | 273 | WP_256729256.1 | hypothetical protein | - |
| HRI96_RS00570 (HRI96_00575) | 120627..121499 | + | 873 | WP_210117615.1 | cyclophilin-like fold protein | - |
| HRI96_RS00575 (HRI96_00580) | 121572..122537 | - | 966 | WP_210117616.1 | zinc-binding dehydrogenase | - |
| HRI96_RS00580 (HRI96_00585) | 122599..123747 | - | 1149 | WP_210117617.1 | radical SAM protein | - |
| HRI96_RS00585 (HRI96_00590) | 123808..124056 | - | 249 | WP_210117618.1 | ACGX-repeat peptide | - |
| HRI96_RS00590 (HRI96_00595) | 124142..124474 | - | 333 | WP_210117619.1 | helix-turn-helix domain-containing protein | - |
| HRI96_RS00595 (HRI96_00600) | 124565..125257 | - | 693 | WP_256729257.1 | 4Fe-4S binding protein | - |
| HRI96_RS00600 (HRI96_00605) | 125517..125744 | + | 228 | WP_210117620.1 | DUF2281 domain-containing protein | - |
| HRI96_RS00605 (HRI96_00610) | 125741..126118 | + | 378 | WP_210117621.1 | type II toxin-antitoxin system VapC family toxin | - |
| HRI96_RS00610 (HRI96_00615) | 126386..126784 | - | 399 | WP_210117622.1 | type II toxin-antitoxin system VapC family toxin | - |
| HRI96_RS00615 (HRI96_00620) | 126784..127005 | - | 222 | WP_210117623.1 | hypothetical protein | - |
| HRI96_RS00620 (HRI96_00625) | 127189..127476 | + | 288 | WP_210117624.1 | BrnT family toxin | Toxin Detail |
| HRI96_RS00625 (HRI96_00630) | 127463..127756 | + | 294 | WP_256729258.1 | BrnA antitoxin family protein | Antitoxin Detail |
| HRI96_RS00630 (HRI96_00635) | 127821..128117 | - | 297 | WP_210117626.1 | HigA family addiction module antitoxin | - |
| HRI96_RS00635 (HRI96_00640) | 128127..128282 | - | 156 | Protein_128 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| HRI96_RS00640 (HRI96_00645) | 128425..129078 | + | 654 | WP_210117627.1 | response regulator transcription factor | - |
| HRI96_RS00645 (HRI96_00650) | 129131..129715 | + | 585 | WP_256729259.1 | hypothetical protein | - |
| HRI96_RS00650 (HRI96_00655) | 129712..130596 | + | 885 | WP_210117629.1 | histidine kinase | - |
| HRI96_RS00655 (HRI96_00660) | 130896..131624 | + | 729 | WP_210117630.1 | leucine-rich repeat domain-containing protein | - |
| HRI96_RS00660 (HRI96_00665) | 131812..132750 | + | 939 | WP_210117631.1 | hypothetical protein | - |
| HRI96_RS00665 (HRI96_00670) | 132793..133173 | + | 381 | WP_210117632.1 | hypothetical protein | - |
| HRI96_RS00670 (HRI96_00675) | 133577..134032 | + | 456 | WP_256729260.1 | hypothetical protein | - |
| HRI96_RS00675 (HRI96_00680) | 134022..134246 | + | 225 | WP_210117633.1 | hypothetical protein | - |
| HRI96_RS00680 (HRI96_00685) | 134493..134891 | - | 399 | WP_210118577.1 | LysR substrate-binding domain-containing protein | - |
| HRI96_RS00685 (HRI96_00690) | 134861..135367 | - | 507 | WP_210117634.1 | LysR family transcriptional regulator | - |
| HRI96_RS00690 (HRI96_00695) | 135500..135799 | + | 300 | WP_210117635.1 | hypothetical protein | - |
| HRI96_RS00695 (HRI96_00700) | 136031..136261 | + | 231 | WP_210117636.1 | hypothetical protein | - |
| HRI96_RS00700 (HRI96_00705) | 136575..137066 | + | 492 | WP_210117637.1 | cyclophilin-like fold protein | - |
| HRI96_RS00705 (HRI96_00710) | 137156..137461 | - | 306 | WP_256729261.1 | hypothetical protein | - |
| HRI96_RS00710 (HRI96_00715) | 137524..138381 | - | 858 | WP_210117638.1 | aldo/keto reductase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|