MGE detailed information
MGE type: Prophage MGE length: 69006 bp
Accession: NZ_CP054161 Location: 3398223..3467228 Organism: Escherichia coli strain STO_Bone2 Replicon: chromosome
Accession: NZ_CP054161 Location: 3398223..3467228 Organism: Escherichia coli strain STO_Bone2 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HRS05_RS16235 (3395598) | 3395598..3398024 | - | 2427 | WP_001551145.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| HRS05_RS16240 (3398223) | 3398223..3398528 | - | 306 | WP_001295396.1 | DUF1161 domain-containing protein | - |
| HRS05_RS16245 (3398636) | 3398636..3399346 | + | 711 | WP_001445899.1 | YnfC family lipoprotein | - |
| HRS05_RS16250 (3399349) | 3399349..3399909 | - | 561 | WP_001138584.1 | spermidine N1-acetyltransferase | - |
| HRS05_RS16255 (3399944) | 3399944..3400285 | - | 342 | WP_000705205.1 | DUF1283 family protein | - |
| HRS05_RS16260 (3400420) | 3400420..3400746 | + | 327 | WP_001314753.1 | YnfA family protein | - |
| HRS05_RS16265 (3400952) | 3400952..3402166 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| HRS05_RS16270 (3402178) | 3402178..3403197 | + | 1020 | WP_000836037.1 | Zn-dependent oxidoreductase | - |
| HRS05_RS16275 (3403385) | 3403385..3404665 | - | 1281 | WP_021523105.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| HRS05_RS16280 (3404700) | 3404700..3404951 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| HRS05_RS16285 (3405024) | 3405024..3407495 | - | 2472 | WP_000048363.1 | exonuclease | - |
| HRS05_RS16290 (3407589) | 3407589..3407780 | - | 192 | WP_001083276.1 | lysis protein YdfD | - |
| HRS05_RS16295 (3407777) | 3407777..3407965 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| HRS05_RS16300 (3408452) | 3408452..3409027 | - | 576 | WP_000344950.1 | hypothetical protein | - |
| HRS05_RS16305 (3409029) | 3409029..3409184 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| HRS05_RS16310 (3409353) | 3409353..3409760 | - | 408 | WP_000381212.1 | helix-turn-helix domain-containing protein | - |
| HRS05_RS16315 (3409841) | 3409841..3410068 | + | 228 | WP_000921596.1 | Cro/CI family transcriptional regulator | - |
| HRS05_RS16320 (3410052) | 3410052..3410573 | + | 522 | WP_000705355.1 | toxin YdaT family protein | - |
| HRS05_RS16325 (3410554) | 3410554..3411519 | + | 966 | WP_000054487.1 | hypothetical protein | - |
| HRS05_RS16330 (3411560) | 3411560..3411958 | + | 399 | WP_001151242.1 | DUF977 family protein | - |
| HRS05_RS16335 (3412161) | 3412161..3412826 | + | 666 | WP_021523102.1 | epoxyqueuosine reductase QueH | - |
| HRS05_RS16340 (3413035) | 3413035..3413649 | + | 615 | WP_001265627.1 | hypothetical protein | - |
| HRS05_RS16345 (3413652) | 3413652..3414674 | + | 1023 | WP_000915483.1 | DUF4868 domain-containing protein | - |
| HRS05_RS16350 (3415179) | 3415179..3416201 | + | 1023 | Protein_3183 | ISNCY family transposase ISCARN112 | Transposase |
| HRS05_RS16355 (3416322) | 3416322..3416471 | + | 150 | WP_011443592.1 | ISNCY family transposase ISCARN112 | Transposase |
| HRS05_RS16360 (3416908) | 3416908..3417240 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| HRS05_RS16365 (3417443) | 3417443..3417748 | - | 306 | WP_001326990.1 | protein YdfV | - |
| HRS05_RS16370 (3417773) | 3417773..3418012 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| HRS05_RS16375 (3418012) | 3418012..3418299 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| HRS05_RS16380 (3418371) | 3418371..3418526 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| HRS05_RS16385 (3418743) | 3418743..3418994 | + | 252 | WP_000980994.1 | protein Rem | - |
| HRS05_RS16390 (3419061) | 3419061..3419339 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| HRS05_RS16395 (3419341) | 3419341..3420390 | + | 1050 | WP_001265199.1 | DUF968 domain-containing protein | - |
| HRS05_RS16400 (3420404) | 3420404..3421156 | + | 753 | WP_001047135.1 | antitermination protein | - |
| HRS05_RS16405 (3421434) | 3421434..3421523 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| HRS05_RS16410 (3421578) | 3421578..3421790 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| HRS05_RS16415 (3422091) | 3422091..3422306 | + | 216 | Protein_3196 | cold shock-like protein CspB | - |
| HRS05_RS16420 (3422670) | 3422670..3422840 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| HRS05_RS16425 (3423060) | 3423060..3423275 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| HRS05_RS16430 (3423280) | 3423280..3423591 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| HRS05_RS16435 (3423588) | 3423588..3424121 | + | 534 | WP_001092971.1 | lysozyme | - |
| HRS05_RS16440 (3424118) | 3424118..3424615 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| HRS05_RS16445 (3424978) | 3424978..3425190 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| HRS05_RS16450 (3425201) | 3425201..3425389 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| HRS05_RS16455 (3425392) | 3425392..3425457 | + | 66 | WP_120795388.1 | small protein YnfR | - |
| HRS05_RS16460 (3425537) | 3425537..3425692 | + | 156 | WP_001309517.1 | protein YnfN | - |
| HRS05_RS16465 (3425864) | 3425864..3426037 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| HRS05_RS16470 (3426189) | 3426189..3426599 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| HRS05_RS16475 (3426657) | 3426657..3426890 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| HRS05_RS16480 (3427279) | 3427279..3427824 | + | 546 | WP_000453587.1 | DNA-packaging protein | - |
| HRS05_RS16485 (3427799) | 3427799..3429724 | + | 1926 | WP_001027269.1 | phage terminase large subunit family protein | - |
| HRS05_RS16490 (3429721) | 3429721..3429927 | + | 207 | WP_000198149.1 | gpW family protein | - |
| HRS05_RS16495 (3429924) | 3429924..3431525 | + | 1602 | WP_001356819.1 | phage portal protein | - |
| HRS05_RS16500 (3431506) | 3431506..3432825 | + | 1320 | WP_020233915.1 | S49 family peptidase | - |
| HRS05_RS16505 (3432835) | 3432835..3433167 | + | 333 | WP_001708751.1 | head decoration protein | - |
| HRS05_RS16510 (3433222) | 3433222..3434247 | + | 1026 | WP_000063277.1 | major capsid protein | - |
| HRS05_RS16515 (3434289) | 3434289..3434687 | + | 399 | WP_020233914.1 | DNA-packaging protein FI | - |
| HRS05_RS16520 (3434699) | 3434699..3435052 | + | 354 | WP_000752979.1 | head-tail joining protein | - |
| HRS05_RS16525 (3435064) | 3435064..3435642 | + | 579 | WP_000975070.1 | phage tail protein | - |
| HRS05_RS16530 (3435639) | 3435639..3436034 | + | 396 | WP_000683128.1 | phage minor tail U family protein | - |
| HRS05_RS16535 (3436042) | 3436042..3436782 | + | 741 | WP_001349920.1 | phage tail protein | - |
| HRS05_RS16540 (3436798) | 3436798..3437220 | + | 423 | WP_000479153.1 | phage minor tail protein G | - |
| HRS05_RS16545 (3437202) | 3437202..3437636 | + | 435 | WP_000459457.1 | phage tail assembly protein T | - |
| HRS05_RS16550 (3437629) | 3437629..3440190 | + | 2562 | WP_032153656.1 | phage tail tape measure protein | - |
| HRS05_RS16555 (3440187) | 3440187..3440516 | + | 330 | WP_000847345.1 | phage tail protein | - |
| HRS05_RS16560 (3440516) | 3440516..3441214 | + | 699 | WP_001551186.1 | phage minor tail protein L | - |
| HRS05_RS16565 (3441220) | 3441220..3441963 | + | 744 | WP_032153655.1 | C40 family peptidase | - |
| HRS05_RS16570 (3441900) | 3441900..3442502 | + | 603 | WP_049286672.1 | tail assembly protein | - |
| HRS05_RS16575 (3442563) | 3442563..3446042 | + | 3480 | WP_021523093.1 | host specificity protein J | - |
| HRS05_RS16580 (3446110) | 3446110..3446709 | + | 600 | WP_001542091.1 | hypothetical protein | VF |
| HRS05_RS16585 (3446774) | 3446774..3449173 | + | 2400 | WP_235163798.1 | prophage tail fiber N-terminal domain-containing protein | - |
| HRS05_RS16590 (3449170) | 3449170..3449451 | + | 282 | WP_000654154.1 | hypothetical protein | - |
| HRS05_RS16595 (3449461) | 3449461..3450165 | + | 705 | WP_000235967.1 | tail fiber domain-containing protein | - |
| HRS05_RS16600 (3450176) | 3450176..3450469 | + | 294 | WP_000355609.1 | hypothetical protein | - |
| HRS05_RS16605 (3450489) | 3450489..3450599 | + | 111 | Protein_3234 | tail fiber assembly protein | - |
| HRS05_RS16610 (3450697) | 3450697..3451287 | - | 591 | WP_000086527.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| HRS05_RS16615 (3451604) | 3451604..3451837 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| HRS05_RS16620 (3451906) | 3451906..3452019 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| HRS05_RS16625 (3452623) | 3452623..3453906 | + | 1284 | Protein_3238 | MHS family MFS transporter YdfJ | - |
| HRS05_RS16630 (3453995) | 3453995..3455455 | + | 1461 | WP_000527786.1 | mannitol dehydrogenase family protein | - |
| HRS05_RS16635 (3455491) | 3455491..3455694 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| HRS05_RS16640 (3455872) | 3455872..3456558 | - | 687 | WP_000215553.1 | DNA-binding transcriptional regulator rspR | - |
| HRS05_RS16645 (3456647) | 3456647..3457393 | - | 747 | WP_000636571.1 | 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase | VF |
| HRS05_RS16650 (3457530) | 3457530..3459575 | + | 2046 | WP_001523328.1 | peptidyl-dipeptidase Dcp | - |
| HRS05_RS16655 (3459620) | 3459620..3459700 | - | 81 | Protein_3244 | hypothetical protein | - |
| HRS05_RS16660 (3459940) | 3459940..3460332 | + | 393 | WP_000671737.1 | YdeI family stress tolerance OB fold protein | - |
| HRS05_RS16665 (3460587) | 3460587..3461477 | + | 891 | WP_001523326.1 | diguanylate cyclase DgcZ | - |
| HRS05_RS16670 (3461592) | 3461592..3461696 | - | 105 | WP_211180496.1 | protein MgtT | - |
| HRS05_RS16675 (3461696) | 3461696..3461791 | - | 96 | WP_000901367.1 | protein MgtS | - |
| HRS05_RS16680 (3461918) | 3461918..3463105 | - | 1188 | WP_001523325.1 | efflux MFS transporter YdeE | - |
| HRS05_RS16685 (3463300) | 3463300..3464199 | + | 900 | WP_000087220.1 | O-acetylserine/cysteine exporter | - |
| HRS05_RS16690 (3464244) | 3464244..3464942 | - | 699 | WP_020233615.1 | GntR family transcriptional regulator | - |
| HRS05_RS16695 (3465141) | 3465141..3465452 | + | 312 | WP_000722571.1 | PTS sugar transporter subunit IIB | - |
| HRS05_RS16700 (3465567) | 3465567..3466889 | + | 1323 | WP_001523323.1 | PTS sugar transporter subunit IIC | - |
| HRS05_RS16705 (3466917) | 3466917..3467228 | + | 312 | WP_020233614.1 | PTS lactose/cellobiose transporter subunit IIA | - |
| HRS05_RS16710 (3467284) | 3467284..3468957 | + | 1674 | WP_001523319.1 | carbohydrate porin | - |
| HRS05_RS16715 (3468982) | 3468982..3470421 | + | 1440 | WP_001523317.1 | 6-phospho-beta-glucosidase | - |
| HRS05_RS16720 (3470478) | 3470478..3470696 | - | 219 | WP_000803518.1 | multiple antibiotic resistance protein MarB | - |
| HRS05_RS16725 (3470728) | 3470728..3471111 | - | 384 | WP_000091199.1 | MDR efflux pump AcrAB transcriptional activator MarA | - |
| HRS05_RS16730 (3471132) | 3471132..3471566 | - | 435 | WP_000843422.1 | multiple antibiotic resistance transcriptional regulator MarR | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|