NZ_CP0540792344423..2506008

MGE detailed information

MGE type: Integrative_Conjugative_Elements        MGE length: 161586 bp
Accession: NZ_CP054079        Location: 2344423..2506008         Organism: Bordetella pertussis strain NZ52       Replicon: chromosome


Gene structure


The 5 kb flanking regions of this MGE are displayed.

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
HRK07_RS11365 (HRK07_11290) 2339620..2341521 + 1902 WP_010930517.1 TRAP transporter large permease subunit -
HRK07_RS11370 (HRK07_11295) 2341570..2342364 + 795 WP_010930516.1 enoyl-CoA hydratase/isomerase family protein -
HRK07_RS11375 (HRK07_11300) 2342377..2343378 - 1002 WP_010930515.1 LD-carboxypeptidase -
HRK07_RS11380 (HRK07_11305) 2343375..2343881 - 507 WP_004568494.1 tRNA adenosine(34) deaminase TadA -
HRK07_RS11385 (HRK07_11310) 2343874..2344722 - 849 WP_010930513.1 HAD family hydrolase -
HRK07_RS11390 (HRK07_11315) 2344820..2345362 - 543 WP_019247780.1 hypothetical protein -
HRK07_RS11395 (HRK07_11320) 2345406..2346356 - 951 WP_005013747.1 IS481 family transposase IS481 Transposase
HRK07_RS11400 (HRK07_11325) 2346512..2346838 - 327 WP_010930511.1 monovalent cation/H(+) antiporter subunit G -
HRK07_RS11405 (HRK07_11330) 2346835..2347119 - 285 WP_003810975.1 K+/H+ antiporter subunit F -
HRK07_RS11410 (HRK07_11335) 2347116..2347595 - 480 WP_010930510.1 Na+/H+ antiporter subunit E -
HRK07_RS11415 (HRK07_11340) 2347592..2349220 - 1629 WP_004568496.1 monovalent cation/H+ antiporter subunit D -
HRK07_RS11420 (HRK07_11345) 2349217..2349561 - 345 WP_003810969.1 Na+/H+ antiporter subunit C -
HRK07_RS11425 (HRK07_11350) 2349561..2352494 - 2934 WP_010930509.1 monovalent cation/H+ antiporter subunit A -
HRK07_RS11430 (HRK07_11355) 2352916..2353653 + 738 Protein_2249 tripartite tricarboxylate transporter substrate-binding protein -
HRK07_RS11435 (HRK07_11360) 2353653..2354603 - 951 WP_010929588.1 IS481 family transposase IS481v1 Transposase
HRK07_RS11440 (HRK07_11365) 2354702..2354998 - 297 WP_003811452.1 hypothetical protein -
HRK07_RS11445 (HRK07_11370) 2355120..2356022 + 903 WP_023995058.1 hypothetical protein VF
HRK07_RS11450 (HRK07_11375) 2356027..2356740 - 714 WP_010930507.1 hypothetical protein VF
HRK07_RS11455 (HRK07_11380) 2356754..2357725 - 972 WP_010930506.1 tripartite tricarboxylate transporter substrate binding protein -
HRK07_RS11460 (HRK07_11385) 2357850..2359178 - 1329 Protein_2255 amidohydrolase family protein -
HRK07_RS11465 (HRK07_11390) 2359445..2359825 + 381 WP_019249653.1 helix-turn-helix domain-containing protein -
HRK07_RS11470 (HRK07_11395) 2359829..2361016 + 1188 WP_010930504.1 MFS transporter -
HRK07_RS11475 (HRK07_11400) 2361040..2361462 + 423 Protein_2258 arsenate reductase (glutaredoxin) -
HRK07_RS11480 (HRK07_11405) 2361455..2362177 + 723 WP_010930503.1 arsenical resistance protein ArsH -
HRK07_RS11485 (HRK07_11410) 2362174..2362362 - 189 WP_033455115.1 hypothetical protein -
HRK07_RS11490 (HRK07_11415) 2362471..2363421 + 951 WP_005013747.1 IS481 family transposase IS481 Transposase
HRK07_RS11495 (HRK07_11420) 2363418..2363846 - 429 WP_019249376.1 hypothetical protein -
HRK07_RS11500 (HRK07_11425) 2363843..2365233 - 1391 Protein_2263 hypothetical protein VF
HRK07_RS11505 (HRK07_11430) 2365248..2366210 - 963 WP_003811538.1 tripartite tricarboxylate transporter substrate binding protein -
HRK07_RS11510 (HRK07_11435) 2366326..2367279 + 954 WP_010930502.1 LysR family transcriptional regulator -
HRK07_RS11515 (HRK07_11440) 2367289..2368281 - 993 WP_010930501.1 tripartite tricarboxylate transporter substrate binding protein -
HRK07_RS11520 (HRK07_11445) 2368333..2369088 - 756 WP_010930500.1 hypothetical protein VF
HRK07_RS11525 (HRK07_11450) 2369153..2369842 - 690 WP_010930499.1 SDR family oxidoreductase -
HRK07_RS11530 (HRK07_11455) 2369923..2371014 + 1092 WP_023997526.1 fumarylacetoacetate hydrolase family protein -
HRK07_RS11535 (HRK07_11460) 2371045..2372241 + 1197 WP_010930497.1 alpha-hydroxy acid oxidase -
HRK07_RS11540 (HRK07_11465) 2372238..2373011 + 774 WP_010930496.1 hypothetical protein VF
HRK07_RS11545 (HRK07_11470) 2373028..2374050 + 1023 WP_023852774.1 tripartite tricarboxylate transporter substrate binding protein -
HRK07_RS11550 (HRK07_11475) 2374136..2375080 + 945 WP_010930494.1 LysR family transcriptional regulator -
HRK07_RS11555 (HRK07_11480) 2375058..2375927 - 870 WP_010930493.1 TauD/TfdA family dioxygenase -
HRK07_RS11560 (HRK07_11485) 2376171..2376794 + 624 WP_010930492.1 glutathione S-transferase N-terminal domain-containing protein -
HRK07_RS11565 (HRK07_11490) 2376927..2377106 + 180 WP_225975616.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin Detail
HRK07_RS11570 (HRK07_11495) 2377109..2377408 + 300 WP_019247905.1 NadS family protein Antitoxin Detail
HRK07_RS11575 (HRK07_11500) 2377422..2380496 - 3075 WP_023995112.1 autotransporter SphB2 -
HRK07_RS11580 (HRK07_11505) 2380626..2381300 + 675 WP_010930489.1 hypothetical protein VF
HRK07_RS11585 (HRK07_11510) 2381293..2383107 + 1815 WP_019247865.1 7TM diverse intracellular signaling domain-containing protein -
HRK07_RS11590 (HRK07_11515) 2383161..2384108 - 948 WP_010930487.1 hypothetical protein -
HRK07_RS11595 (HRK07_11520) 2384213..2385163 + 951 WP_005012067.1 IS481 family transposase IS481v2 Transposase
HRK07_RS11600 (HRK07_11525) 2385179..2385637 - 459 Protein_2283 spermidine synthase -
HRK07_RS11605 (HRK07_11530) 2385716..2387341 - 1626 WP_023852967.1 hypothetical protein VF
HRK07_RS11610 (HRK07_11535) 2387391..2388425 - 1035 WP_010930475.1 HAD family hydrolase -
HRK07_RS11615 (HRK07_11540) 2388428..2389774 - 1347 WP_010930476.1 BatD family protein -
HRK07_RS11620 (HRK07_11545) 2389771..2391285 - 1515 WP_010930477.1 VWA domain-containing protein -
HRK07_RS11625 (HRK07_11550) 2391276..2392286 - 1011 WP_010930478.1 VWA domain-containing protein -
HRK07_RS11630 (HRK07_11555) 2392273..2392763 - 491 Protein_2289 DUF4381 domain-containing protein -
HRK07_RS11635 (HRK07_11560) 2392760..2393701 - 942 WP_010930479.1 DUF58 domain-containing protein -
HRK07_RS11640 (HRK07_11565) 2393710..2394678 - 969 WP_010930480.1 AAA family ATPase -
HRK07_RS11645 (HRK07_11570) 2394734..2395874 - 1141 Protein_2292 formylglycine-generating enzyme family protein -
HRK07_RS11650 (HRK07_11575) 2396218..2397186 + 969 WP_010930481.1 transporter -
HRK07_RS11655 (HRK07_11580) 2397364..2398353 + 990 WP_010930482.1 tripartite tricarboxylate transporter substrate binding protein -
HRK07_RS11660 (HRK07_11585) 2398400..2399158 + 759 WP_010926609.1 hypothetical protein VF
HRK07_RS11665 (HRK07_11590) 2399348..2400085 + 738 WP_010930483.1 TerC family protein -
HRK07_RS11670 (HRK07_11595) 2400184..2401134 + 951 WP_005012808.1 IS481 family transposase IS481v2 Transposase
HRK07_RS11675 (HRK07_11605) 2401319..2402101 + 783 WP_003816696.1 ABC transporter ATP-binding protein -
HRK07_RS11680 (HRK07_11610) 2402095..2402796 + 702 WP_003810743.1 hypothetical protein VF
HRK07_RS11685 (HRK07_11615) 2403036..2403638 + 603 WP_003810741.1 TetR/AcrR family transcriptional regulator -
HRK07_RS11690 (HRK07_11620) 2403614..2404528 - 915 WP_010930484.1 FAD-dependent oxidoreductase -
HRK07_RS11695 (HRK07_11625) 2404965..2405915 + 951 WP_005013747.1 IS481 family transposase IS481 Transposase
HRK07_RS11700 (HRK07_11630) 2405912..2407468 - 1557 WP_014486074.1 hypothetical protein VF
HRK07_RS11705 (HRK07_11635) 2407461..2408234 - 774 WP_010930486.1 hypothetical protein VF
HRK07_RS11710 (HRK07_11640) 2408293..2409243 - 951 WP_077069076.1 IS481 family transposase IS481 Transposase
HRK07_RS11715 (HRK07_11645) 2409325..2410500 - 1176 WP_023852812.1 hypothetical protein VF
HRK07_RS11720 (HRK07_11650) 2410514..2412571 - 2058 WP_010930473.1 hypothetical protein VF
HRK07_RS11725 (HRK07_11655) 2412568..2413593 - 1026 WP_010930472.1 hypothetical protein VF
HRK07_RS11730 (HRK07_11660) 2413605..2414894 - 1290 WP_010930471.1 hypothetical protein VF
HRK07_RS11735 (HRK07_11665) 2414917..2416014 - 1098 WP_010930470.1 hypothetical protein VF
HRK07_RS11740 (HRK07_11670) 2416011..2416901 - 891 WP_003811224.1 capsular polysaccharide biosynthesis protein -
HRK07_RS11745 (HRK07_11675) 2416898..2418982 - 2085 WP_010930469.1 hypothetical protein VF
HRK07_RS11750 (HRK07_11680) 2419014..2420183 - 1170 WP_010930468.1 capsule polysaccharide transporter -
HRK07_RS11755 (HRK07_11685) 2420225..2420965 - 741 WP_014486073.1 hypothetical protein VF
HRK07_RS11760 (HRK07_11690) 2420965..2421735 - 771 WP_010930466.1 hypothetical protein VF
HRK07_RS11765 (HRK07_11695) 2422060..2422227 + 168 WP_019247171.1 hypothetical protein -
HRK07_RS11770 (HRK07_11700) 2422495..2423376 + 882 WP_023995078.1 hypothetical protein VF
HRK07_RS11775 (HRK07_11705) 2423403..2425487 + 2085 WP_010930464.1 hypothetical protein -
HRK07_RS11780 (HRK07_11710) 2425625..2427610 + 1986 WP_010930463.1 hypothetical protein VF
HRK07_RS11785 (HRK07_11715) 2427934..2428434 - 501 WP_003811209.1 hypothetical protein VF
HRK07_RS11790 (HRK07_11720) 2428533..2430059 - 1527 WP_010930461.1 CoA-acylating methylmalonate-semialdehyde dehydrogenase -
HRK07_RS11795 (HRK07_11725) 2430197..2431084 + 888 WP_010930460.1 hypothetical protein VF
HRK07_RS11800 (HRK07_11730) 2431099..2432052 - 954 WP_003811203.1 hypothetical protein VF
HRK07_RS11805 (HRK07_11735) 2432104..2434194 - 2091 WP_033446218.1 ATP-dependent DNA helicase RecG -
HRK07_RS11810 (HRK07_11740) 2434210..2434596 - 387 WP_010930458.1 Rid family detoxifying hydrolase -
HRK07_RS11815 (HRK07_11745) 2434773..2437126 - 2354 Protein_2326 hypothetical protein VF
HRK07_RS11820 (HRK07_11750) 2437290..2438093 - 804 WP_010930457.1 2,5-didehydrogluconate reductase DkgB -
HRK07_RS11825 (HRK07_11755) 2438165..2439285 - 1121 Protein_2328 MFS transporter -
HRK07_RS11830 (HRK07_11760) 2439387..2440289 + 903 WP_010930456.1 hypothetical protein VF
HRK07_RS11835 (HRK07_11765) 2440354..2441130 - 777 WP_003811187.1 ferredoxin--NADP reductase -
HRK07_RS11840 (HRK07_11770) 2441452..2442501 + 1050 WP_010930455.1 Fe(3+) ABC transporter substrate-binding protein -
HRK07_RS11845 (HRK07_11775) 2442625..2444295 + 1671 WP_010930454.1 iron ABC transporter permease -
HRK07_RS11850 (HRK07_11780) 2444300..2445094 + 795 WP_019248220.1 hypothetical protein VF
HRK07_RS11855 (HRK07_11785) 2445193..2446143 + 951 WP_005012067.1 IS481 family transposase IS481v2 Transposase
HRK07_RS11860 (HRK07_11790) 2446163..2447068 - 906 WP_010930453.1 pirin family protein -
HRK07_RS11865 (HRK07_11795) 2447146..2447844 - 699 WP_003811176.1 pirin family protein -
HRK07_RS11870 (HRK07_11800) 2448004..2448948 + 945 WP_010930452.1 hypothetical protein VF
HRK07_RS11875 (HRK07_11805) 2448958..2450445 - 1488 WP_010930451.1 hypothetical protein VF
HRK07_RS11880 (HRK07_11810) 2450445..2451512 - 1068 WP_003811167.1 nitrogen regulation protein NR(II) -
HRK07_RS11885 (HRK07_11815) 2451576..2452988 - 1413 WP_003811164.1 type I glutamate--ammonia ligase -
HRK07_RS11890 (HRK07_11820) 2453174..2454394 - 1221 WP_010930450.1 hypothetical protein VF
HRK07_RS11895 (HRK07_11825) 2454416..2455366 - 951 WP_005012808.1 IS481 family transposase IS481v2 Transposase
HRK07_RS11900 (HRK07_11830) 2455465..2456106 - 642 WP_010930449.1 hypothetical protein VF
HRK07_RS11905 (HRK07_11835) 2456233..2458035 + 1803 WP_010930448.1 EAL domain-containing protein -
HRK07_RS11910 (HRK07_11840) 2458174..2459604 - 1431 Protein_2345 hypothetical protein VF
HRK07_RS11915 (HRK07_11845) 2459687..2460592 - 906 WP_003811152.1 LysR family transcriptional regulator -
HRK07_RS11920 (HRK07_11850) 2460774..2462150 + 1377 WP_010930446.1 MmgE/PrpD family protein -
HRK07_RS11925 (HRK07_11855) 2462317..2463057 - 741 WP_003811149.1 ribonuclease PH -
HRK07_RS11930 (HRK07_11860) 2463194..2464120 + 927 WP_003811148.1 YicC/YloC family endoribonuclease -
HRK07_RS11935 (HRK07_11865) 2464393..2464548 + 156 WP_010930445.1 hypothetical protein -
HRK07_RS19980 2464561..2464689 + 129 WP_010928840.1 hypothetical protein -
HRK07_RS11940 (HRK07_11870) 2464686..2464970 + 285 WP_010926696.1 helix-turn-helix domain-containing protein -
HRK07_RS11945 (HRK07_11875) 2465029..2466519 - 1491 WP_003811138.1 AMP nucleosidase -
HRK07_RS11950 (HRK07_11880) 2466764..2467363 + 600 WP_003811137.1 hypothetical protein VF
HRK07_RS11955 (HRK07_11885) 2467368..2468138 - 771 WP_003811135.1 hypothetical protein VF
HRK07_RS11960 (HRK07_11890) 2468376..2469089 + 714 WP_010930444.1 hypothetical protein VF
HRK07_RS11965 (HRK07_11895) 2469086..2470003 + 918 WP_010930443.1 c-type cytochrome -
HRK07_RS11970 (HRK07_11900) 2470139..2470771 + 633 WP_010930442.1 guanylate kinase -
HRK07_RS11975 (HRK07_11905) 2470813..2471016 + 204 WP_010930441.1 DNA-directed RNA polymerase subunit omega -
HRK07_RS11980 (HRK07_11910) 2471041..2473320 + 2280 WP_010930440.1 hypothetical protein VF
HRK07_RS11985 (HRK07_11915) 2473333..2474061 - 729 WP_003811113.1 hypothetical protein VF
HRK07_RS11990 (HRK07_11920) 2474058..2474717 - 660 WP_003811112.1 glutamine ABC transporter permease GlnP -
HRK07_RS11995 (HRK07_11925) 2474786..2475538 - 753 WP_010930439.1 glutamine ABC transporter substrate-binding protein GlnH -
HRK07_RS12000 (HRK07_11930) 2475720..2476670 - 951 WP_005012067.1 IS481 family transposase IS481v2 Transposase
HRK07_RS12005 (HRK07_11935) 2476829..2477477 + 649 Protein_2365 site-2 protease family protein -
HRK07_RS12010 (HRK07_11940) 2477563..2478468 + 906 WP_033446216.1 4-hydroxy-tetrahydrodipicolinate synthase -
HRK07_RS12015 (HRK07_11945) 2478480..2479607 + 1128 WP_010930437.1 outer membrane protein assembly factor BamC -
HRK07_RS12020 (HRK07_11950) 2479696..2480310 - 615 WP_010930436.1 hypothetical protein VF
HRK07_RS12025 (HRK07_11955) 2480337..2480690 - 354 WP_240077191.1 hypothetical protein -
HRK07_RS12030 (HRK07_11960) 2480959..2482146 - 1188 WP_010930435.1 cupin domain-containing protein -
HRK07_RS12035 (HRK07_11965) 2482143..2484740 - 2598 WP_033446228.1 DNA mismatch repair protein MutS -
HRK07_RS12040 (HRK07_11970) 2484995..2485210 + 216 WP_010930433.1 dodecin family protein -
HRK07_RS12045 (HRK07_11975) 2485666..2486220 - 555 WP_010930432.1 NAD(P)H-dependent oxidoreductase -
HRK07_RS12050 (HRK07_11980) 2486488..2487048 + 561 WP_010930431.1 membrane protein -
HRK07_RS12055 (HRK07_11985) 2487160..2488464 + 1305 WP_023853587.1 imelysin family protein -
HRK07_RS12060 (HRK07_11990) 2488461..2489972 + 1512 WP_019247498.1 di-heme oxidoredictase family protein -
HRK07_RS12065 (HRK07_11995) 2490024..2491079 + 1056 WP_224019495.1 imelysin family protein -
HRK07_RS12070 (HRK07_12000) 2491069..2492181 + 1113 WP_019249265.1 DUF1513 domain-containing protein -
HRK07_RS12075 (HRK07_12005) 2492280..2493230 + 951 WP_005012067.1 IS481 family transposase IS481v2 Transposase
HRK07_RS12080 (HRK07_12010) 2493227..2493853 - 627 WP_010928449.1 L-threonylcarbamoyladenylate synthase -
HRK07_RS12085 (HRK07_12015) 2493913..2494764 + 852 WP_010930427.1 neutral zinc metallopeptidase -
HRK07_RS12090 (HRK07_12020) 2494868..2495467 + 600 WP_010930426.1 hypothetical protein -
HRK07_RS12095 (HRK07_12025) 2495464..2496228 + 765 WP_010930425.1 hypothetical protein -
HRK07_RS12100 (HRK07_12030) 2496298..2497248 - 951 WP_005013747.1 IS481 family transposase IS481 Transposase
HRK07_RS12105 (HRK07_12035) 2497347..2497955 - 609 WP_010930424.1 recombination mediator RecR -
HRK07_RS12110 (HRK07_12040) 2498006..2498332 - 327 WP_010930423.1 YbaB/EbfC family nucleoid-associated protein -
HRK07_RS12115 (HRK07_12045) 2498379..2500469 - 2091 WP_010930422.1 DNA polymerase III subunit gamma/tau -
HRK07_RS12125 (HRK07_12055) 2501262..2504666 - 3405 WP_010930421.1 UvrD-helicase domain-containing protein -
HRK07_RS12130 (HRK07_12060) 2504679..2507339 - 2661 WP_010930420.1 PD-(D/E)XK nuclease family protein -
HRK07_RS12135 (HRK07_12065) 2507361..2507507 - 147 WP_004568212.1 hypothetical protein -
HRK07_RS12140 (HRK07_12070) 2507543..2508745 - 1203 WP_010930419.1 MFS transporter -
HRK07_RS12150 (HRK07_12080) 2509432..2510544 + 1113 WP_023994932.1 D-alanyl-D-alanine endopeptidase -

Similar MGE(s)


Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.

Detail Organism MGE type Related TA Genome accession Coordinates Mash
distance