NZ_CP0540772344497..2506098

MGE detailed information

MGE type: Integrative_Conjugative_Elements        MGE length: 161602 bp
Accession: NZ_CP054077        Location: 2344497..2506098         Organism: Bordetella pertussis strain NZ54       Replicon: chromosome


Gene structure


The 5 kb flanking regions of this MGE are displayed.

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
HRK09_RS11380 (HRK09_11305) 2339694..2341595 + 1902 WP_010930517.1 TRAP transporter large permease subunit -
HRK09_RS11385 (HRK09_11310) 2341644..2342438 + 795 WP_010930516.1 enoyl-CoA hydratase/isomerase family protein -
HRK09_RS11390 (HRK09_11315) 2342451..2343452 - 1002 WP_010930515.1 LD-carboxypeptidase -
HRK09_RS11395 (HRK09_11320) 2343449..2343955 - 507 WP_004568494.1 tRNA adenosine(34) deaminase TadA -
HRK09_RS11400 (HRK09_11325) 2343948..2344796 - 849 WP_010930513.1 HAD family hydrolase -
HRK09_RS11405 (HRK09_11330) 2344894..2345436 - 543 WP_019247780.1 hypothetical protein -
HRK09_RS11410 (HRK09_11335) 2345480..2346430 - 951 WP_005013747.1 IS481 family transposase IS481 Transposase
HRK09_RS11415 (HRK09_11340) 2346586..2346912 - 327 WP_010930511.1 monovalent cation/H(+) antiporter subunit G -
HRK09_RS11420 (HRK09_11345) 2346909..2347193 - 285 WP_003810975.1 K+/H+ antiporter subunit F -
HRK09_RS11425 (HRK09_11350) 2347190..2347669 - 480 WP_010930510.1 Na+/H+ antiporter subunit E -
HRK09_RS11430 (HRK09_11355) 2347666..2349294 - 1629 WP_004568496.1 monovalent cation/H+ antiporter subunit D -
HRK09_RS11435 (HRK09_11360) 2349291..2349635 - 345 WP_003810969.1 Na+/H+ antiporter subunit C -
HRK09_RS11440 (HRK09_11365) 2349635..2352568 - 2934 WP_010930509.1 monovalent cation/H+ antiporter subunit A -
HRK09_RS11445 (HRK09_11370) 2352990..2353727 + 738 Protein_2252 tripartite tricarboxylate transporter substrate-binding protein -
HRK09_RS11450 (HRK09_11375) 2353727..2354677 - 951 WP_010930208.1 IS481 family transposase IS481v2 Transposase
HRK09_RS11455 (HRK09_11380) 2354776..2355072 - 297 WP_003811452.1 hypothetical protein -
HRK09_RS11460 (HRK09_11385) 2355194..2356096 + 903 WP_023995058.1 HTH-type transcriptional regulator CynR VF
HRK09_RS11465 (HRK09_11390) 2356101..2356814 - 714 WP_010930507.1 Sulfoquinovose 1-dehydrogenase VF
HRK09_RS11470 (HRK09_11395) 2356828..2357799 - 972 WP_010930506.1 tripartite tricarboxylate transporter substrate binding protein -
HRK09_RS11475 (HRK09_11400) 2357924..2359252 - 1329 Protein_2258 amidohydrolase family protein -
HRK09_RS11480 (HRK09_11405) 2359519..2359899 + 381 WP_019249653.1 helix-turn-helix domain-containing protein -
HRK09_RS11485 (HRK09_11410) 2359903..2361090 + 1188 WP_010930504.1 MFS transporter -
HRK09_RS11490 (HRK09_11415) 2361114..2361536 + 423 Protein_2261 arsenate reductase (glutaredoxin) -
HRK09_RS11495 (HRK09_11420) 2361529..2362251 + 723 WP_010930503.1 arsenical resistance protein ArsH -
HRK09_RS11500 (HRK09_11425) 2362248..2362436 - 189 WP_033455115.1 hypothetical protein -
HRK09_RS11505 (HRK09_11430) 2362545..2363495 + 951 WP_005013747.1 IS481 family transposase IS481 Transposase
HRK09_RS11510 (HRK09_11435) 2363492..2363920 - 429 WP_019249376.1 hypothetical protein -
HRK09_RS11515 (HRK09_11440) 2363917..2365307 - 1391 Protein_2266 Arylsulfatase VF
HRK09_RS11520 (HRK09_11445) 2365322..2366284 - 963 WP_003811538.1 tripartite tricarboxylate transporter substrate binding protein -
HRK09_RS11525 (HRK09_11450) 2366400..2367353 + 954 WP_010930502.1 LysR family transcriptional regulator -
HRK09_RS11530 (HRK09_11455) 2367363..2368355 - 993 WP_010930501.1 tripartite tricarboxylate transporter substrate binding protein -
HRK09_RS11535 (HRK09_11460) 2368407..2369138 - 732 WP_230457143.1 3-oxoacyl-[acyl-carrier-protein] reductase FabG VF
HRK09_RS11540 (HRK09_11465) 2369227..2369916 - 690 WP_010930499.1 SDR family oxidoreductase -
HRK09_RS11545 (HRK09_11470) 2369997..2371088 + 1092 WP_023997526.1 fumarylacetoacetate hydrolase family protein -
HRK09_RS11550 (HRK09_11475) 2371119..2372315 + 1197 WP_010930497.1 alpha-hydroxy acid oxidase -
HRK09_RS11555 (HRK09_11480) 2372312..2373085 + 774 WP_010930496.1 3-oxoacyl-[acyl-carrier-protein] reductase FabG VF
HRK09_RS11560 (HRK09_11485) 2373102..2374124 + 1023 WP_023852774.1 tripartite tricarboxylate transporter substrate binding protein -
HRK09_RS11565 (HRK09_11490) 2374210..2375154 + 945 WP_010930494.1 LysR family transcriptional regulator -
HRK09_RS11570 (HRK09_11495) 2375132..2376001 - 870 WP_010930493.1 TauD/TfdA family dioxygenase -
HRK09_RS11575 (HRK09_11500) 2376245..2376868 + 624 WP_010930492.1 glutathione S-transferase N-terminal domain-containing protein -
HRK09_RS11580 (HRK09_11505) 2377001..2377180 + 180 WP_225975616.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin Detail
HRK09_RS11585 (HRK09_11510) 2377183..2377482 + 300 WP_019247905.1 NadS family protein Antitoxin Detail
HRK09_RS11590 (HRK09_11515) 2377496..2380570 - 3075 WP_023995112.1 autotransporter SphB2 -
HRK09_RS11595 (HRK09_11520) 2380700..2381374 + 675 WP_010930489.1 putative transcriptional regulatory protein NarL VF
HRK09_RS11600 (HRK09_11525) 2381367..2383181 + 1815 WP_019247865.1 7TM diverse intracellular signaling domain-containing protein -
HRK09_RS11605 (HRK09_11530) 2383235..2384182 - 948 WP_010930487.1 hypothetical protein -
HRK09_RS11610 (HRK09_11535) 2384287..2385237 + 951 WP_005012067.1 IS481 family transposase IS481v2 Transposase
HRK09_RS11615 (HRK09_11540) 2385253..2385711 - 459 Protein_2286 spermidine synthase -
HRK09_RS11620 (HRK09_11545) 2385790..2387415 - 1626 WP_023852967.1 Arylsulfatase VF
HRK09_RS11625 (HRK09_11550) 2387465..2388499 - 1035 WP_010930475.1 HAD family hydrolase -
HRK09_RS11630 (HRK09_11555) 2388502..2389848 - 1347 WP_010930476.1 BatD family protein -
HRK09_RS11635 (HRK09_11560) 2389845..2391359 - 1515 WP_010930477.1 VWA domain-containing protein -
HRK09_RS11640 (HRK09_11565) 2391350..2392360 - 1011 WP_010930478.1 VWA domain-containing protein -
HRK09_RS11645 (HRK09_11570) 2392347..2392837 - 491 Protein_2292 DUF4381 domain-containing protein -
HRK09_RS11650 (HRK09_11575) 2392834..2393775 - 942 WP_010930479.1 DUF58 domain-containing protein -
HRK09_RS11655 (HRK09_11580) 2393784..2394752 - 969 WP_010930480.1 AAA family ATPase -
HRK09_RS11660 (HRK09_11585) 2394808..2395948 - 1141 Protein_2295 formylglycine-generating enzyme family protein -
HRK09_RS11665 (HRK09_11590) 2396292..2397260 + 969 WP_010930481.1 transporter -
HRK09_RS11670 (HRK09_11595) 2397438..2398427 + 990 WP_010930482.1 tripartite tricarboxylate transporter substrate binding protein -
HRK09_RS11675 (HRK09_11600) 2398474..2399232 + 759 WP_010926609.1 Dihydroanticapsin 7-dehydrogenase VF
HRK09_RS11680 (HRK09_11605) 2399422..2400159 + 738 WP_010930483.1 TerC family protein -
HRK09_RS11685 (HRK09_11610) 2400258..2401208 + 951 WP_005012808.1 IS481 family transposase IS481v2 Transposase
HRK09_RS11690 (HRK09_11620) 2401393..2402175 + 783 WP_003816696.1 ABC transporter ATP-binding protein -
HRK09_RS11695 (HRK09_11625) 2402169..2402870 + 702 WP_003810743.1 High-affinity branched-chain amino acid transport ATP-binding protein LivF VF
HRK09_RS11700 (HRK09_11630) 2403110..2403712 + 603 WP_003810741.1 TetR/AcrR family transcriptional regulator -
HRK09_RS11705 (HRK09_11635) 2403688..2404602 - 915 WP_010930484.1 FAD-dependent oxidoreductase -
HRK09_RS11710 (HRK09_11640) 2405039..2405989 + 951 WP_005013747.1 IS481 family transposase IS481 Transposase
HRK09_RS11715 (HRK09_11645) 2405986..2407542 - 1557 WP_014486074.1 hypothetical protein VF
HRK09_RS11720 (HRK09_11650) 2407535..2408308 - 774 WP_010930486.1 putative oxidoreductase VF
HRK09_RS11725 (HRK09_11655) 2408367..2409317 - 951 WP_005013747.1 IS481 family transposase IS481 Transposase
HRK09_RS11730 (HRK09_11660) 2409399..2410574 - 1176 WP_023852812.1 hypothetical protein VF
HRK09_RS11735 (HRK09_11665) 2410588..2412645 - 2058 WP_010930473.1 hypothetical protein VF
HRK09_RS11740 (HRK09_11670) 2412642..2413667 - 1026 WP_010930472.1 UDP-N-acetylglucosamine 4-epimerase VF
HRK09_RS11745 (HRK09_11675) 2413679..2414968 - 1290 WP_010930471.1 UDP-N-acetyl-D-glucosamine 6-dehydrogenase VF
HRK09_RS11750 (HRK09_11680) 2414991..2416088 - 1098 WP_010930470.1 hypothetical protein VF
HRK09_RS11755 (HRK09_11685) 2416085..2416975 - 891 WP_003811224.1 capsular polysaccharide biosynthesis protein -
HRK09_RS11760 (HRK09_11690) 2416972..2419056 - 2085 WP_010930469.1 Putative glycosyltransferase EpsF VF
HRK09_RS11765 (HRK09_11695) 2419088..2420257 - 1170 WP_010930468.1 capsule polysaccharide transporter -
HRK09_RS11770 (HRK09_11700) 2420299..2421039 - 741 WP_014486073.1 Polysialic acid transport ATP-binding protein KpsT VF
HRK09_RS11775 (HRK09_11705) 2421039..2421809 - 771 WP_010930466.1 Polysialic acid transport protein KpsM VF
HRK09_RS11780 (HRK09_11710) 2422134..2422301 + 168 WP_019247171.1 hypothetical protein -
HRK09_RS11785 (HRK09_11715) 2422569..2423450 + 882 WP_023995078.1 Putative glycosyltransferase EpsH VF
HRK09_RS11790 (HRK09_11720) 2423477..2425561 + 2085 WP_010930464.1 hypothetical protein -
HRK09_RS11795 (HRK09_11725) 2425699..2427684 + 1986 WP_010930463.1 hypothetical protein VF
HRK09_RS11800 (HRK09_11730) 2428008..2428508 - 501 WP_003811209.1 DNA protection during starvation protein 2 VF
HRK09_RS11805 (HRK09_11735) 2428607..2430133 - 1527 WP_010930461.1 CoA-acylating methylmalonate-semialdehyde dehydrogenase -
HRK09_RS11810 (HRK09_11740) 2430271..2431158 + 888 WP_010930460.1 HTH-type transcriptional regulator DmlR VF
HRK09_RS11815 (HRK09_11745) 2431173..2432126 - 954 WP_003811203.1 Hydrogen peroxide-inducible genes activator VF
HRK09_RS11820 (HRK09_11750) 2432178..2434268 - 2091 WP_033446218.1 ATP-dependent DNA helicase RecG -
HRK09_RS11825 (HRK09_11755) 2434284..2434670 - 387 WP_010930458.1 Rid family detoxifying hydrolase -
HRK09_RS11830 (HRK09_11760) 2434847..2437200 - 2354 Protein_2329 Pertactin autotransporter VF
HRK09_RS11835 (HRK09_11765) 2437364..2438167 - 804 WP_010930457.1 2,5-didehydrogluconate reductase DkgB -
HRK09_RS11840 (HRK09_11770) 2438239..2439359 - 1121 Protein_2331 MFS transporter -
HRK09_RS11845 (HRK09_11775) 2439461..2440363 + 903 WP_010930456.1 HTH-type transcriptional regulator DmlR VF
HRK09_RS11850 (HRK09_11780) 2440428..2441204 - 777 WP_003811187.1 ferredoxin--NADP reductase -
HRK09_RS11855 (HRK09_11785) 2441526..2442575 + 1050 WP_010930455.1 Fe(3+) ABC transporter substrate-binding protein -
HRK09_RS11860 (HRK09_11790) 2442699..2444369 + 1671 WP_010930454.1 iron ABC transporter permease -
HRK09_RS11865 (HRK09_11795) 2444374..2445168 + 795 WP_019248220.1 Sulfate/thiosulfate import ATP-binding protein CysA VF
HRK09_RS11870 (HRK09_11800) 2445267..2446217 + 951 WP_005012067.1 IS481 family transposase IS481v2 Transposase
HRK09_RS11875 (HRK09_11805) 2446237..2447142 - 906 WP_010930453.1 pirin family protein -
HRK09_RS11880 (HRK09_11810) 2447220..2447918 - 699 WP_003811176.1 pirin family protein -
HRK09_RS11885 (HRK09_11815) 2448078..2449022 + 945 WP_010930452.1 HTH-type transcriptional regulator YhaJ VF
HRK09_RS11890 (HRK09_11820) 2449032..2450519 - 1488 WP_010930451.1 DNA-binding transcriptional regulator NtrC VF
HRK09_RS11895 (HRK09_11825) 2450519..2451586 - 1068 WP_003811167.1 nitrogen regulation protein NR(II) -
HRK09_RS11900 (HRK09_11830) 2451650..2453062 - 1413 WP_003811164.1 type I glutamate--ammonia ligase -
HRK09_RS11905 (HRK09_11835) 2453248..2454468 - 1221 WP_010930450.1 Oxygen-independent coproporphyrinogen-III oxidase-like protein YqeR VF
HRK09_RS11910 (HRK09_11840) 2454490..2455440 - 951 WP_005012808.1 IS481 family transposase IS481v2 Transposase
HRK09_RS11915 (HRK09_11845) 2455539..2456180 - 642 WP_010930449.1 dITP/XTP pyrophosphatase VF
HRK09_RS11920 (HRK09_11850) 2456307..2458109 + 1803 WP_010930448.1 EAL domain-containing protein -
HRK09_RS11925 (HRK09_11855) 2458248..2459678 - 1431 Protein_2348 Methyl-accepting chemotaxis protein I VF
HRK09_RS11930 (HRK09_11860) 2459761..2460666 - 906 WP_003811152.1 LysR family transcriptional regulator -
HRK09_RS11935 (HRK09_11865) 2460848..2462224 + 1377 WP_010930446.1 MmgE/PrpD family protein -
HRK09_RS11940 (HRK09_11870) 2462391..2463131 - 741 WP_003811149.1 ribonuclease PH -
HRK09_RS11945 (HRK09_11875) 2463268..2464194 + 927 WP_003811148.1 YicC/YloC family endoribonuclease -
HRK09_RS11950 (HRK09_11880) 2464467..2464622 + 156 WP_010930445.1 hypothetical protein -
HRK09_RS19980 2464635..2464763 + 129 WP_010928840.1 hypothetical protein -
HRK09_RS11955 (HRK09_11885) 2464760..2465044 + 285 WP_010926696.1 helix-turn-helix domain-containing protein -
HRK09_RS11960 (HRK09_11890) 2465103..2466593 - 1491 WP_003811138.1 AMP nucleosidase -
HRK09_RS11965 (HRK09_11895) 2466838..2467437 + 600 WP_003811137.1 Murein DD-endopeptidase MepH VF
HRK09_RS11970 (HRK09_11900) 2467442..2468212 - 771 WP_003811135.1 3-beta-hydroxycholanate 3-dehydrogenase (NADP(+)) VF
HRK09_RS11975 (HRK09_11905) 2468450..2469163 + 714 WP_010930444.1 Cytochrome c4 VF
HRK09_RS11980 (HRK09_11910) 2469160..2470077 + 918 WP_010930443.1 c-type cytochrome -
HRK09_RS11985 (HRK09_11915) 2470213..2470845 + 633 WP_010930442.1 guanylate kinase -
HRK09_RS11990 (HRK09_11920) 2470887..2471090 + 204 WP_010930441.1 DNA-directed RNA polymerase subunit omega -
HRK09_RS11995 (HRK09_11925) 2471115..2473394 + 2280 WP_010930440.1 Bifunctional (p)ppGpp synthase/hydrolase SpoT VF
HRK09_RS12000 (HRK09_11930) 2473407..2474135 - 729 WP_003811113.1 Glutamine transport ATP-binding protein GlnQ VF
HRK09_RS12005 (HRK09_11935) 2474132..2474791 - 660 WP_003811112.1 glutamine ABC transporter permease GlnP -
HRK09_RS12010 (HRK09_11940) 2474860..2475612 - 753 WP_010930439.1 glutamine ABC transporter substrate-binding protein GlnH -
HRK09_RS12015 (HRK09_11945) 2475794..2476744 - 951 WP_005012067.1 IS481 family transposase IS481v2 Transposase
HRK09_RS12020 (HRK09_11950) 2476903..2477551 + 649 Protein_2368 site-2 protease family protein -
HRK09_RS12025 (HRK09_11955) 2477637..2478542 + 906 WP_033446216.1 4-hydroxy-tetrahydrodipicolinate synthase -
HRK09_RS12030 (HRK09_11960) 2478554..2479681 + 1128 WP_010930437.1 outer membrane protein assembly factor BamC -
HRK09_RS12035 (HRK09_11965) 2479770..2480384 - 615 WP_010930436.1 Major fimbrial subunit SMF-1 VF
HRK09_RS12040 (HRK09_11970) 2481039..2482226 - 1188 WP_010930435.1 cupin domain-containing protein -
HRK09_RS12045 (HRK09_11975) 2482223..2484820 - 2598 WP_033446228.1 DNA mismatch repair protein MutS -
HRK09_RS12050 (HRK09_11980) 2485075..2485290 + 216 WP_010930433.1 dodecin family protein -
HRK09_RS12055 (HRK09_11985) 2485746..2486300 - 555 WP_010930432.1 NAD(P)H-dependent oxidoreductase -
HRK09_RS12060 (HRK09_11990) 2486568..2487128 + 561 WP_010930431.1 membrane protein -
HRK09_RS12065 (HRK09_11995) 2487240..2488544 + 1305 WP_023853587.1 imelysin family protein -
HRK09_RS12070 (HRK09_12000) 2488541..2490052 + 1512 WP_019247498.1 di-heme oxidoredictase family protein -
HRK09_RS12075 (HRK09_12005) 2490104..2491159 + 1056 WP_224019495.1 imelysin family protein -
HRK09_RS12080 (HRK09_12010) 2491149..2492261 + 1113 WP_019249265.1 DUF1513 domain-containing protein -
HRK09_RS12085 (HRK09_12015) 2492360..2493310 + 951 WP_005012067.1 IS481 family transposase IS481v2 Transposase
HRK09_RS12090 (HRK09_12020) 2493307..2493933 - 627 WP_010928449.1 L-threonylcarbamoyladenylate synthase -
HRK09_RS12095 (HRK09_12025) 2493993..2494844 + 852 WP_010930427.1 neutral zinc metallopeptidase -
HRK09_RS12100 (HRK09_12030) 2494948..2495547 + 600 WP_010930426.1 hypothetical protein -
HRK09_RS12105 (HRK09_12035) 2495544..2496308 + 765 WP_010930425.1 hypothetical protein -
HRK09_RS12110 (HRK09_12040) 2496378..2497328 - 951 WP_005013747.1 IS481 family transposase IS481 Transposase
HRK09_RS12115 (HRK09_12045) 2497427..2498035 - 609 WP_010930424.1 recombination mediator RecR -
HRK09_RS12120 (HRK09_12050) 2498086..2498412 - 327 WP_010930423.1 YbaB/EbfC family nucleoid-associated protein -
HRK09_RS12125 (HRK09_12055) 2498459..2500549 - 2091 WP_010930422.1 DNA polymerase III subunit gamma/tau -
HRK09_RS12135 (HRK09_12065) 2501352..2504756 - 3405 WP_010930421.1 UvrD-helicase domain-containing protein -
HRK09_RS12140 (HRK09_12070) 2504769..2507429 - 2661 WP_010930420.1 PD-(D/E)XK nuclease family protein -
HRK09_RS12145 (HRK09_12075) 2507451..2507597 - 147 WP_004568212.1 hypothetical protein -
HRK09_RS12150 (HRK09_12080) 2507633..2508835 - 1203 WP_010930419.1 MFS transporter -
HRK09_RS12160 (HRK09_12090) 2509522..2510634 + 1113 WP_023994932.1 D-alanyl-D-alanine endopeptidase -

Similar MGE(s)


Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.

Detail Organism MGE type Related TA Genome accession Coordinates Mash
distance