NZ_CP0540752343099..2504694

MGE detailed information

MGE type: Integrative_Conjugative_Elements        MGE length: 161596 bp
Accession: NZ_CP054075        Location: 2343099..2504694         Organism: Bordetella pertussis strain NZ56       Replicon: chromosome


Gene structure


The 5 kb flanking regions of this MGE are displayed.

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
HRK11_RS11365 (HRK11_11285) 2338296..2340197 + 1902 WP_010930517.1 TRAP transporter large permease subunit -
HRK11_RS11370 (HRK11_11290) 2340246..2341040 + 795 WP_010930516.1 enoyl-CoA hydratase/isomerase family protein -
HRK11_RS11375 (HRK11_11295) 2341053..2342054 - 1002 WP_010930515.1 LD-carboxypeptidase -
HRK11_RS11380 (HRK11_11300) 2342051..2342557 - 507 WP_004568494.1 tRNA adenosine(34) deaminase TadA -
HRK11_RS11385 (HRK11_11305) 2342550..2343398 - 849 WP_010930513.1 HAD family hydrolase -
HRK11_RS11390 (HRK11_11310) 2343496..2344038 - 543 WP_019247780.1 hypothetical protein -
HRK11_RS11395 (HRK11_11315) 2344082..2345032 - 951 WP_005013747.1 IS481 family transposase IS481 Transposase
HRK11_RS11400 (HRK11_11320) 2345188..2345514 - 327 WP_010930511.1 monovalent cation/H(+) antiporter subunit G -
HRK11_RS11405 (HRK11_11325) 2345511..2345795 - 285 WP_003810975.1 K+/H+ antiporter subunit F -
HRK11_RS11410 (HRK11_11330) 2345792..2346271 - 480 WP_010930510.1 Na+/H+ antiporter subunit E -
HRK11_RS11415 (HRK11_11335) 2346268..2347896 - 1629 WP_004568496.1 monovalent cation/H+ antiporter subunit D -
HRK11_RS11420 (HRK11_11340) 2347893..2348237 - 345 WP_003810969.1 Na+/H+ antiporter subunit C -
HRK11_RS11425 (HRK11_11345) 2348237..2351170 - 2934 WP_010930509.1 monovalent cation/H+ antiporter subunit A -
HRK11_RS11430 (HRK11_11350) 2351592..2352329 + 738 Protein_2249 tripartite tricarboxylate transporter substrate-binding protein -
HRK11_RS11435 (HRK11_11355) 2352329..2353279 - 951 WP_010929588.1 IS481 family transposase IS481v1 Transposase
HRK11_RS11440 (HRK11_11360) 2353378..2353674 - 297 WP_003811452.1 hypothetical protein -
HRK11_RS11445 (HRK11_11365) 2353796..2354698 + 903 WP_023995058.1 HTH-type transcriptional regulator CynR VF
HRK11_RS11450 (HRK11_11370) 2354703..2355416 - 714 WP_010930507.1 Sulfoquinovose 1-dehydrogenase VF
HRK11_RS11455 (HRK11_11375) 2355430..2356401 - 972 WP_010930506.1 tripartite tricarboxylate transporter substrate binding protein -
HRK11_RS11460 (HRK11_11380) 2356526..2357854 - 1329 Protein_2255 amidohydrolase family protein -
HRK11_RS11465 (HRK11_11385) 2358121..2358501 + 381 WP_019249653.1 helix-turn-helix domain-containing protein -
HRK11_RS11470 (HRK11_11390) 2358505..2359692 + 1188 WP_010930504.1 MFS transporter -
HRK11_RS11475 (HRK11_11395) 2359716..2360138 + 423 Protein_2258 arsenate reductase (glutaredoxin) -
HRK11_RS11480 (HRK11_11400) 2360131..2360853 + 723 WP_010930503.1 arsenical resistance protein ArsH -
HRK11_RS11485 (HRK11_11405) 2360850..2361041 - 192 WP_023852764.1 hypothetical protein -
HRK11_RS11490 (HRK11_11410) 2361147..2362097 + 951 WP_005013747.1 IS481 family transposase IS481 Transposase
HRK11_RS11495 (HRK11_11415) 2362094..2362522 - 429 WP_019249376.1 hypothetical protein -
HRK11_RS11500 (HRK11_11420) 2362519..2363909 - 1391 Protein_2263 Arylsulfatase VF
HRK11_RS11505 (HRK11_11425) 2363924..2364886 - 963 WP_003811538.1 tripartite tricarboxylate transporter substrate binding protein -
HRK11_RS11510 (HRK11_11430) 2365002..2365955 + 954 WP_010930502.1 LysR family transcriptional regulator -
HRK11_RS11515 (HRK11_11435) 2365965..2366957 - 993 WP_010930501.1 tripartite tricarboxylate transporter substrate binding protein -
HRK11_RS11520 (HRK11_11440) 2367009..2367740 - 732 WP_230457143.1 3-oxoacyl-[acyl-carrier-protein] reductase FabG VF
HRK11_RS11525 (HRK11_11445) 2367829..2368518 - 690 WP_010930499.1 SDR family oxidoreductase -
HRK11_RS11530 (HRK11_11450) 2368599..2369690 + 1092 WP_023997526.1 fumarylacetoacetate hydrolase family protein -
HRK11_RS11535 (HRK11_11455) 2369721..2370917 + 1197 WP_010930497.1 alpha-hydroxy acid oxidase -
HRK11_RS11540 (HRK11_11460) 2370914..2371687 + 774 WP_010930496.1 3-oxoacyl-[acyl-carrier-protein] reductase FabG VF
HRK11_RS11545 (HRK11_11465) 2371704..2372726 + 1023 WP_023852774.1 tripartite tricarboxylate transporter substrate binding protein -
HRK11_RS11550 (HRK11_11470) 2372812..2373756 + 945 WP_010930494.1 LysR family transcriptional regulator -
HRK11_RS11555 (HRK11_11475) 2373734..2374603 - 870 WP_010930493.1 TauD/TfdA family dioxygenase -
HRK11_RS11560 (HRK11_11480) 2374847..2375470 + 624 WP_010930492.1 glutathione S-transferase N-terminal domain-containing protein -
HRK11_RS11565 (HRK11_11485) 2375603..2375782 + 180 WP_225975616.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin Detail
HRK11_RS11570 (HRK11_11490) 2375785..2376084 + 300 WP_019247905.1 NadS family protein Antitoxin Detail
HRK11_RS11575 (HRK11_11495) 2376098..2379172 - 3075 WP_023995112.1 autotransporter SphB2 -
HRK11_RS11580 (HRK11_11500) 2379302..2379976 + 675 WP_010930489.1 putative transcriptional regulatory protein NarL VF
HRK11_RS11585 (HRK11_11505) 2379969..2381783 + 1815 WP_019247865.1 7TM diverse intracellular signaling domain-containing protein -
HRK11_RS11590 (HRK11_11510) 2381837..2382784 - 948 WP_010930487.1 hypothetical protein -
HRK11_RS11595 (HRK11_11515) 2382889..2383839 + 951 WP_005012067.1 IS481 family transposase IS481v2 Transposase
HRK11_RS11600 (HRK11_11520) 2383855..2384313 - 459 Protein_2283 spermidine synthase -
HRK11_RS11605 (HRK11_11525) 2384392..2386017 - 1626 WP_023852967.1 Arylsulfatase VF
HRK11_RS11610 (HRK11_11530) 2386067..2387101 - 1035 WP_010930475.1 HAD family hydrolase -
HRK11_RS11615 (HRK11_11535) 2387104..2388450 - 1347 WP_010930476.1 BatD family protein -
HRK11_RS11620 (HRK11_11540) 2388447..2389961 - 1515 WP_010930477.1 VWA domain-containing protein -
HRK11_RS11625 (HRK11_11545) 2389952..2390962 - 1011 WP_010930478.1 VWA domain-containing protein -
HRK11_RS11630 (HRK11_11550) 2390949..2391439 - 491 Protein_2289 DUF4381 domain-containing protein -
HRK11_RS11635 (HRK11_11555) 2391436..2392377 - 942 WP_010930479.1 DUF58 domain-containing protein -
HRK11_RS11640 (HRK11_11560) 2392386..2393354 - 969 WP_010930480.1 AAA family ATPase -
HRK11_RS11645 (HRK11_11565) 2393410..2394550 - 1141 Protein_2292 formylglycine-generating enzyme family protein -
HRK11_RS11650 (HRK11_11570) 2394894..2395862 + 969 WP_010930481.1 transporter -
HRK11_RS11655 (HRK11_11575) 2396040..2397029 + 990 WP_010930482.1 tripartite tricarboxylate transporter substrate binding protein -
HRK11_RS11660 (HRK11_11580) 2397076..2397834 + 759 WP_010926609.1 Dihydroanticapsin 7-dehydrogenase VF
HRK11_RS11665 (HRK11_11585) 2398024..2398761 + 738 WP_010930483.1 TerC family protein -
HRK11_RS11670 (HRK11_11590) 2398860..2399810 + 951 WP_005012808.1 IS481 family transposase IS481v2 Transposase
HRK11_RS11675 (HRK11_11600) 2399995..2400777 + 783 WP_003816696.1 ABC transporter ATP-binding protein -
HRK11_RS11680 (HRK11_11605) 2400771..2401472 + 702 WP_003810743.1 High-affinity branched-chain amino acid transport ATP-binding protein LivF VF
HRK11_RS11685 (HRK11_11610) 2401712..2402314 + 603 WP_003810741.1 TetR/AcrR family transcriptional regulator -
HRK11_RS11690 (HRK11_11615) 2402290..2403204 - 915 WP_010930484.1 FAD-dependent oxidoreductase -
HRK11_RS11695 (HRK11_11620) 2403641..2404591 + 951 WP_005013747.1 IS481 family transposase IS481 Transposase
HRK11_RS11700 (HRK11_11625) 2404588..2406144 - 1557 WP_014486074.1 hypothetical protein VF
HRK11_RS11705 (HRK11_11630) 2406137..2406910 - 774 WP_010930486.1 putative oxidoreductase VF
HRK11_RS11710 (HRK11_11635) 2406969..2407919 - 951 WP_135283049.1 IS481 family transposase IS481v1 Transposase
HRK11_RS11715 (HRK11_11640) 2408001..2409176 - 1176 WP_023852812.1 hypothetical protein VF
HRK11_RS11720 (HRK11_11645) 2409190..2411247 - 2058 WP_010930473.1 hypothetical protein VF
HRK11_RS11725 (HRK11_11650) 2411244..2412269 - 1026 WP_010930472.1 UDP-N-acetylglucosamine 4-epimerase VF
HRK11_RS11730 (HRK11_11655) 2412281..2413570 - 1290 WP_010930471.1 UDP-N-acetyl-D-glucosamine 6-dehydrogenase VF
HRK11_RS11735 (HRK11_11660) 2413593..2414690 - 1098 WP_010930470.1 hypothetical protein VF
HRK11_RS11740 (HRK11_11665) 2414687..2415577 - 891 WP_003811224.1 capsular polysaccharide biosynthesis protein -
HRK11_RS11745 (HRK11_11670) 2415574..2417658 - 2085 WP_010930469.1 Putative glycosyltransferase EpsF VF
HRK11_RS11750 (HRK11_11675) 2417690..2418859 - 1170 WP_010930468.1 capsule polysaccharide transporter -
HRK11_RS11755 (HRK11_11680) 2418901..2419641 - 741 WP_014486073.1 Polysialic acid transport ATP-binding protein KpsT VF
HRK11_RS11760 (HRK11_11685) 2419641..2420411 - 771 WP_010930466.1 Polysialic acid transport protein KpsM VF
HRK11_RS11765 (HRK11_11690) 2420736..2420903 + 168 WP_019247171.1 hypothetical protein -
HRK11_RS11770 (HRK11_11695) 2421171..2422052 + 882 WP_023995078.1 Putative glycosyltransferase EpsH VF
HRK11_RS11775 (HRK11_11700) 2422079..2424163 + 2085 WP_010930464.1 hypothetical protein -
HRK11_RS11780 (HRK11_11705) 2424301..2426286 + 1986 WP_010930463.1 hypothetical protein VF
HRK11_RS11785 (HRK11_11710) 2426610..2427110 - 501 WP_003811209.1 DNA protection during starvation protein 2 VF
HRK11_RS11790 (HRK11_11715) 2427209..2428735 - 1527 WP_010930461.1 CoA-acylating methylmalonate-semialdehyde dehydrogenase -
HRK11_RS11795 (HRK11_11720) 2428873..2429760 + 888 WP_010930460.1 HTH-type transcriptional regulator DmlR VF
HRK11_RS11800 (HRK11_11725) 2429775..2430728 - 954 WP_003811203.1 Hydrogen peroxide-inducible genes activator VF
HRK11_RS11805 (HRK11_11730) 2430780..2432870 - 2091 WP_033446218.1 ATP-dependent DNA helicase RecG -
HRK11_RS11810 (HRK11_11735) 2432886..2433272 - 387 WP_010930458.1 Rid family detoxifying hydrolase -
HRK11_RS11815 (HRK11_11740) 2433449..2435802 - 2354 Protein_2326 Pertactin autotransporter VF
HRK11_RS11820 (HRK11_11745) 2435966..2436769 - 804 WP_010930457.1 2,5-didehydrogluconate reductase DkgB -
HRK11_RS11825 (HRK11_11750) 2436841..2437961 - 1121 Protein_2328 MFS transporter -
HRK11_RS11830 (HRK11_11755) 2438063..2438965 + 903 WP_010930456.1 HTH-type transcriptional regulator DmlR VF
HRK11_RS11835 (HRK11_11760) 2439030..2439806 - 777 WP_003811187.1 ferredoxin--NADP reductase -
HRK11_RS11840 (HRK11_11765) 2440128..2441177 + 1050 WP_010930455.1 Fe(3+) ABC transporter substrate-binding protein -
HRK11_RS11845 (HRK11_11770) 2441301..2442971 + 1671 WP_010930454.1 iron ABC transporter permease -
HRK11_RS11850 (HRK11_11775) 2442976..2443770 + 795 WP_019248220.1 Sulfate/thiosulfate import ATP-binding protein CysA VF
HRK11_RS11855 (HRK11_11780) 2443869..2444819 + 951 WP_005012067.1 IS481 family transposase IS481v2 Transposase
HRK11_RS11860 (HRK11_11785) 2444839..2445744 - 906 WP_010930453.1 pirin family protein -
HRK11_RS11865 (HRK11_11790) 2445822..2446520 - 699 WP_003811176.1 pirin family protein -
HRK11_RS11870 (HRK11_11795) 2446680..2447624 + 945 WP_010930452.1 HTH-type transcriptional regulator YhaJ VF
HRK11_RS11875 (HRK11_11800) 2447634..2449121 - 1488 WP_010930451.1 DNA-binding transcriptional regulator NtrC VF
HRK11_RS11880 (HRK11_11805) 2449121..2450188 - 1068 WP_003811167.1 nitrogen regulation protein NR(II) -
HRK11_RS11885 (HRK11_11810) 2450252..2451664 - 1413 WP_003811164.1 type I glutamate--ammonia ligase -
HRK11_RS11890 (HRK11_11815) 2451850..2453070 - 1221 WP_010930450.1 Oxygen-independent coproporphyrinogen-III oxidase-like protein YqeR VF
HRK11_RS11895 (HRK11_11820) 2453092..2454042 - 951 WP_005012808.1 IS481 family transposase IS481v2 Transposase
HRK11_RS11900 (HRK11_11825) 2454141..2454782 - 642 WP_010930449.1 dITP/XTP pyrophosphatase VF
HRK11_RS11905 (HRK11_11830) 2454909..2456711 + 1803 WP_010930448.1 EAL domain-containing protein -
HRK11_RS11910 (HRK11_11835) 2456850..2458280 - 1431 Protein_2345 Methyl-accepting chemotaxis protein I VF
HRK11_RS11915 (HRK11_11840) 2458363..2459268 - 906 WP_003811152.1 LysR family transcriptional regulator -
HRK11_RS11920 (HRK11_11845) 2459450..2460826 + 1377 WP_010930446.1 MmgE/PrpD family protein -
HRK11_RS11925 (HRK11_11850) 2460993..2461733 - 741 WP_003811149.1 ribonuclease PH -
HRK11_RS11930 (HRK11_11855) 2461870..2462796 + 927 WP_003811148.1 YicC/YloC family endoribonuclease -
HRK11_RS11935 (HRK11_11860) 2463069..2463224 + 156 WP_010930445.1 hypothetical protein -
HRK11_RS19965 2463237..2463365 + 129 WP_010928840.1 hypothetical protein -
HRK11_RS11940 (HRK11_11865) 2463362..2463646 + 285 WP_010926696.1 helix-turn-helix domain-containing protein -
HRK11_RS11945 (HRK11_11870) 2463705..2465195 - 1491 WP_003811138.1 AMP nucleosidase -
HRK11_RS11950 (HRK11_11875) 2465440..2466039 + 600 WP_003811137.1 Murein DD-endopeptidase MepH VF
HRK11_RS11955 (HRK11_11880) 2466044..2466814 - 771 WP_003811135.1 3-beta-hydroxycholanate 3-dehydrogenase (NADP(+)) VF
HRK11_RS11960 (HRK11_11885) 2467052..2467765 + 714 WP_010930444.1 Cytochrome c4 VF
HRK11_RS11965 (HRK11_11890) 2467762..2468679 + 918 WP_010930443.1 c-type cytochrome -
HRK11_RS11970 (HRK11_11895) 2468815..2469447 + 633 WP_010930442.1 guanylate kinase -
HRK11_RS11975 (HRK11_11900) 2469489..2469692 + 204 WP_010930441.1 DNA-directed RNA polymerase subunit omega -
HRK11_RS11980 (HRK11_11905) 2469717..2471996 + 2280 WP_010930440.1 Bifunctional (p)ppGpp synthase/hydrolase SpoT VF
HRK11_RS11985 (HRK11_11910) 2472009..2472737 - 729 WP_003811113.1 Glutamine transport ATP-binding protein GlnQ VF
HRK11_RS11990 (HRK11_11915) 2472734..2473393 - 660 WP_003811112.1 glutamine ABC transporter permease GlnP -
HRK11_RS11995 (HRK11_11920) 2473462..2474214 - 753 WP_010930439.1 glutamine ABC transporter substrate-binding protein GlnH -
HRK11_RS12000 (HRK11_11925) 2474396..2475346 - 951 WP_005012067.1 IS481 family transposase IS481v2 Transposase
HRK11_RS12005 (HRK11_11930) 2475505..2476153 + 649 Protein_2365 site-2 protease family protein -
HRK11_RS12010 (HRK11_11935) 2476239..2477144 + 906 WP_033446216.1 4-hydroxy-tetrahydrodipicolinate synthase -
HRK11_RS12015 (HRK11_11940) 2477156..2478283 + 1128 WP_010930437.1 outer membrane protein assembly factor BamC -
HRK11_RS12020 (HRK11_11945) 2478372..2478986 - 615 WP_010930436.1 Major fimbrial subunit SMF-1 VF
HRK11_RS12025 (HRK11_11950) 2479636..2480823 - 1188 WP_010930435.1 cupin domain-containing protein -
HRK11_RS12030 (HRK11_11955) 2480820..2483417 - 2598 WP_033446228.1 DNA mismatch repair protein MutS -
HRK11_RS12035 (HRK11_11960) 2483672..2483887 + 216 WP_010930433.1 dodecin family protein -
HRK11_RS12040 (HRK11_11965) 2484343..2484897 - 555 WP_010930432.1 NAD(P)H-dependent oxidoreductase -
HRK11_RS12045 (HRK11_11970) 2485165..2485725 + 561 WP_010930431.1 membrane protein -
HRK11_RS12050 (HRK11_11975) 2485837..2487141 + 1305 WP_023853587.1 imelysin family protein -
HRK11_RS12055 (HRK11_11980) 2487138..2488649 + 1512 WP_019247498.1 di-heme oxidoredictase family protein -
HRK11_RS12060 (HRK11_11985) 2488701..2489756 + 1056 WP_224019495.1 imelysin family protein -
HRK11_RS12065 (HRK11_11990) 2489746..2490858 + 1113 WP_019249265.1 DUF1513 domain-containing protein -
HRK11_RS12070 (HRK11_11995) 2490957..2491906 + 950 Protein_2378 IS481-like element IS481 family transposase -
HRK11_RS12075 (HRK11_12000) 2491903..2492529 - 627 WP_010928449.1 L-threonylcarbamoyladenylate synthase -
HRK11_RS12080 (HRK11_12005) 2492589..2493440 + 852 WP_010930427.1 neutral zinc metallopeptidase -
HRK11_RS12085 (HRK11_12010) 2493544..2494143 + 600 WP_010930426.1 hypothetical protein -
HRK11_RS12090 (HRK11_12015) 2494140..2494904 + 765 WP_010930425.1 hypothetical protein -
HRK11_RS12095 (HRK11_12020) 2494974..2495924 - 951 WP_005013747.1 IS481 family transposase IS481 Transposase
HRK11_RS12100 (HRK11_12025) 2496023..2496631 - 609 WP_010930424.1 recombination mediator RecR -
HRK11_RS12105 (HRK11_12030) 2496682..2497008 - 327 WP_010930423.1 YbaB/EbfC family nucleoid-associated protein -
HRK11_RS12110 (HRK11_12035) 2497055..2499145 - 2091 WP_010930422.1 DNA polymerase III subunit gamma/tau -
HRK11_RS12120 (HRK11_12045) 2499948..2503352 - 3405 WP_010930421.1 UvrD-helicase domain-containing protein -
HRK11_RS12125 (HRK11_12050) 2503365..2506025 - 2661 WP_010930420.1 PD-(D/E)XK nuclease family protein -
HRK11_RS12130 (HRK11_12055) 2506047..2506193 - 147 WP_004568212.1 hypothetical protein -
HRK11_RS12135 (HRK11_12060) 2506229..2507431 - 1203 WP_010930419.1 MFS transporter -
HRK11_RS12145 (HRK11_12070) 2508118..2509230 + 1113 WP_023994932.1 D-alanyl-D-alanine endopeptidase -

Similar MGE(s)


Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.

Detail Organism MGE type Related TA Genome accession Coordinates Mash
distance