MGE detailed information

MGE type: Integrative_Conjugative_Elements        MGE length: 161593 bp
Accession: NZ_CP054071        Location: 2343441..2505033         Organism: Bordetella pertussis strain NZ60       Replicon: chromosome


Gene structure


The 5 kb flanking regions of this MGE are displayed.

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
HRK14_RS11300 (HRK14_11230) 2338638..2340539 + 1902 WP_010930517.1 TRAP transporter large permease subunit -
HRK14_RS11305 (HRK14_11235) 2340588..2341382 + 795 WP_010930516.1 enoyl-CoA hydratase/isomerase family protein -
HRK14_RS11310 (HRK14_11240) 2341395..2342396 - 1002 WP_010930515.1 LD-carboxypeptidase -
HRK14_RS11315 (HRK14_11245) 2342393..2342899 - 507 WP_004568494.1 tRNA adenosine(34) deaminase TadA -
HRK14_RS11320 (HRK14_11250) 2342892..2343740 - 849 WP_010930513.1 HAD family hydrolase -
HRK14_RS11325 (HRK14_11255) 2343838..2344380 - 543 WP_019247780.1 hypothetical protein -
HRK14_RS11330 (HRK14_11260) 2344424..2345374 - 951 WP_005013747.1 IS481 family transposase IS481 Transposase
HRK14_RS11335 (HRK14_11265) 2345530..2345856 - 327 WP_010930511.1 monovalent cation/H(+) antiporter subunit G -
HRK14_RS11340 (HRK14_11270) 2345853..2346137 - 285 WP_003810975.1 K+/H+ antiporter subunit F -
HRK14_RS11345 (HRK14_11275) 2346134..2346613 - 480 WP_010930510.1 Na+/H+ antiporter subunit E -
HRK14_RS11350 (HRK14_11280) 2346610..2348238 - 1629 WP_004568496.1 monovalent cation/H+ antiporter subunit D -
HRK14_RS11355 (HRK14_11285) 2348235..2348579 - 345 WP_003810969.1 Na+/H+ antiporter subunit C -
HRK14_RS11360 (HRK14_11290) 2348579..2351512 - 2934 WP_010930509.1 monovalent cation/H+ antiporter subunit A -
HRK14_RS11365 (HRK14_11295) 2351934..2352671 + 738 Protein_2230 tripartite tricarboxylate transporter substrate-binding protein -
HRK14_RS11370 (HRK14_11300) 2352671..2353621 - 951 WP_010930208.1 IS481 family transposase IS481v2 Transposase
HRK14_RS11375 (HRK14_11305) 2353720..2354016 - 297 WP_003811452.1 hypothetical protein -
HRK14_RS11380 (HRK14_11310) 2354138..2355040 + 903 WP_023995058.1 HTH-type transcriptional regulator CynR VF
HRK14_RS11385 (HRK14_11315) 2355045..2355758 - 714 WP_010930507.1 Sulfoquinovose 1-dehydrogenase VF
HRK14_RS11390 (HRK14_11320) 2355772..2356743 - 972 WP_010930506.1 tripartite tricarboxylate transporter substrate binding protein -
HRK14_RS11395 (HRK14_11325) 2356868..2358196 - 1329 Protein_2236 amidohydrolase family protein -
HRK14_RS11400 (HRK14_11330) 2358463..2358843 + 381 WP_019249653.1 helix-turn-helix domain-containing protein -
HRK14_RS11405 (HRK14_11335) 2358847..2360034 + 1188 WP_010930504.1 MFS transporter -
HRK14_RS11410 (HRK14_11340) 2360058..2360480 + 423 Protein_2239 arsenate reductase (glutaredoxin) -
HRK14_RS11415 (HRK14_11345) 2360473..2361195 + 723 WP_010930503.1 arsenical resistance protein ArsH -
HRK14_RS11420 (HRK14_11350) 2361192..2361380 - 189 WP_033455115.1 hypothetical protein -
HRK14_RS11425 (HRK14_11355) 2361489..2362439 + 951 WP_005013747.1 IS481 family transposase IS481 Transposase
HRK14_RS11430 (HRK14_11360) 2362436..2362864 - 429 WP_019249376.1 hypothetical protein -
HRK14_RS11435 (HRK14_11365) 2362861..2364251 - 1391 Protein_2244 Arylsulfatase VF
HRK14_RS11440 (HRK14_11370) 2364266..2365228 - 963 WP_003811538.1 tripartite tricarboxylate transporter substrate binding protein -
HRK14_RS11445 (HRK14_11375) 2365344..2366297 + 954 WP_010930502.1 LysR family transcriptional regulator -
HRK14_RS11450 (HRK14_11380) 2366307..2367299 - 993 WP_010930501.1 tripartite tricarboxylate transporter substrate binding protein -
HRK14_RS11455 (HRK14_11385) 2367351..2368106 - 756 WP_010930500.1 3-oxoacyl-[acyl-carrier-protein] reductase FabG VF
HRK14_RS11460 (HRK14_11390) 2368171..2368851 - 681 WP_019248752.1 SDR family oxidoreductase -
HRK14_RS11465 (HRK14_11395) 2368941..2370032 + 1092 WP_023997526.1 fumarylacetoacetate hydrolase family protein -
HRK14_RS11470 (HRK14_11400) 2370063..2371259 + 1197 WP_010930497.1 alpha-hydroxy acid oxidase -
HRK14_RS11475 (HRK14_11405) 2371256..2372029 + 774 WP_010930496.1 3-oxoacyl-[acyl-carrier-protein] reductase FabG VF
HRK14_RS11480 (HRK14_11410) 2372046..2373068 + 1023 WP_023852774.1 tripartite tricarboxylate transporter substrate binding protein -
HRK14_RS11485 (HRK14_11415) 2373154..2374098 + 945 WP_010930494.1 LysR family transcriptional regulator -
HRK14_RS11490 (HRK14_11420) 2374076..2374945 - 870 WP_010930493.1 TauD/TfdA family dioxygenase -
HRK14_RS11495 (HRK14_11425) 2375189..2375812 + 624 WP_010930492.1 glutathione S-transferase N-terminal domain-containing protein -
HRK14_RS11500 (HRK14_11430) 2375945..2376124 + 180 WP_225975616.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin Detail
HRK14_RS11505 (HRK14_11435) 2376127..2376426 + 300 WP_019247905.1 NadS family protein Antitoxin Detail
HRK14_RS11510 (HRK14_11440) 2376440..2379514 - 3075 WP_023995112.1 autotransporter SphB2 -
HRK14_RS11515 (HRK14_11445) 2379644..2380318 + 675 WP_010930489.1 putative transcriptional regulatory protein NarL VF
HRK14_RS11520 (HRK14_11450) 2380311..2382125 + 1815 WP_019247865.1 7TM diverse intracellular signaling domain-containing protein -
HRK14_RS11525 (HRK14_11455) 2382179..2383126 - 948 WP_010930487.1 hypothetical protein -
HRK14_RS11530 (HRK14_11460) 2383231..2384181 + 951 WP_005012067.1 IS481 family transposase IS481v2 Transposase
HRK14_RS11535 (HRK14_11465) 2384197..2384655 - 459 Protein_2264 spermidine synthase -
HRK14_RS11540 (HRK14_11470) 2384734..2386359 - 1626 WP_023852967.1 Arylsulfatase VF
HRK14_RS11545 (HRK14_11475) 2386409..2387443 - 1035 WP_010930475.1 HAD family hydrolase -
HRK14_RS11550 (HRK14_11480) 2387446..2388792 - 1347 WP_010930476.1 BatD family protein -
HRK14_RS11555 (HRK14_11485) 2388789..2390303 - 1515 WP_010930477.1 VWA domain-containing protein -
HRK14_RS11560 (HRK14_11490) 2390294..2391304 - 1011 WP_010930478.1 VWA domain-containing protein -
HRK14_RS11565 (HRK14_11495) 2391291..2391781 - 491 Protein_2270 DUF4381 domain-containing protein -
HRK14_RS11570 (HRK14_11500) 2391778..2392719 - 942 WP_010930479.1 DUF58 domain-containing protein -
HRK14_RS11575 (HRK14_11505) 2392728..2393696 - 969 WP_010930480.1 AAA family ATPase -
HRK14_RS11580 (HRK14_11510) 2393752..2394892 - 1141 Protein_2273 formylglycine-generating enzyme family protein -
HRK14_RS11585 (HRK14_11515) 2395236..2396204 + 969 WP_010930481.1 transporter -
HRK14_RS11590 (HRK14_11520) 2396382..2397371 + 990 WP_010930482.1 tripartite tricarboxylate transporter substrate binding protein -
HRK14_RS11595 (HRK14_11525) 2397418..2398176 + 759 WP_010926609.1 Dihydroanticapsin 7-dehydrogenase VF
HRK14_RS11600 (HRK14_11530) 2398366..2399103 + 738 WP_010930483.1 TerC family protein -
HRK14_RS11605 (HRK14_11535) 2399202..2400152 + 951 WP_005012808.1 IS481 family transposase IS481v2 Transposase
HRK14_RS11610 (HRK14_11545) 2400337..2401119 + 783 WP_003816696.1 ABC transporter ATP-binding protein -
HRK14_RS11615 (HRK14_11550) 2401113..2401814 + 702 WP_003810743.1 High-affinity branched-chain amino acid transport ATP-binding protein LivF VF
HRK14_RS11620 (HRK14_11555) 2402054..2402656 + 603 WP_003810741.1 TetR/AcrR family transcriptional regulator -
HRK14_RS11625 (HRK14_11560) 2402632..2403546 - 915 WP_010930484.1 FAD-dependent oxidoreductase -
HRK14_RS11630 (HRK14_11565) 2403983..2404933 + 951 WP_005013747.1 IS481 family transposase IS481 Transposase
HRK14_RS11635 (HRK14_11570) 2404930..2406486 - 1557 WP_014486074.1 hypothetical protein VF
HRK14_RS11640 (HRK14_11575) 2406479..2407252 - 774 WP_010930486.1 putative oxidoreductase VF
HRK14_RS11645 (HRK14_11580) 2407311..2408261 - 951 WP_005013747.1 IS481 family transposase IS481 Transposase
HRK14_RS11650 (HRK14_11585) 2408343..2409518 - 1176 WP_023852812.1 hypothetical protein VF
HRK14_RS11655 (HRK14_11590) 2409532..2411589 - 2058 WP_010930473.1 hypothetical protein VF
HRK14_RS11660 (HRK14_11595) 2411586..2412611 - 1026 WP_010930472.1 UDP-N-acetylglucosamine 4-epimerase VF
HRK14_RS11665 (HRK14_11600) 2412623..2413912 - 1290 WP_010930471.1 UDP-N-acetyl-D-glucosamine 6-dehydrogenase VF
HRK14_RS11670 (HRK14_11605) 2413935..2415032 - 1098 WP_010930470.1 hypothetical protein VF
HRK14_RS11675 (HRK14_11610) 2415029..2415919 - 891 WP_003811224.1 capsular polysaccharide biosynthesis protein -
HRK14_RS11680 (HRK14_11615) 2415916..2418000 - 2085 WP_010930469.1 Putative glycosyltransferase EpsF VF
HRK14_RS11685 (HRK14_11620) 2418032..2419201 - 1170 WP_010930468.1 capsule polysaccharide transporter -
HRK14_RS11690 (HRK14_11625) 2419243..2419983 - 741 WP_014486073.1 Polysialic acid transport ATP-binding protein KpsT VF
HRK14_RS11695 (HRK14_11630) 2419983..2420753 - 771 WP_010930466.1 Polysialic acid transport protein KpsM VF
HRK14_RS11700 (HRK14_11635) 2421078..2421245 + 168 WP_019247171.1 hypothetical protein -
HRK14_RS11705 (HRK14_11640) 2421513..2422394 + 882 WP_023995078.1 Putative glycosyltransferase EpsH VF
HRK14_RS11710 (HRK14_11645) 2422421..2424505 + 2085 WP_010930464.1 hypothetical protein -
HRK14_RS11715 (HRK14_11650) 2424643..2426628 + 1986 WP_010930463.1 hypothetical protein VF
HRK14_RS11720 (HRK14_11655) 2426952..2427452 - 501 WP_003811209.1 DNA protection during starvation protein 2 VF
HRK14_RS11725 (HRK14_11660) 2427551..2429077 - 1527 WP_010930461.1 CoA-acylating methylmalonate-semialdehyde dehydrogenase -
HRK14_RS11730 (HRK14_11665) 2429215..2430102 + 888 WP_010930460.1 HTH-type transcriptional regulator DmlR VF
HRK14_RS11735 (HRK14_11670) 2430117..2431070 - 954 WP_003811203.1 Hydrogen peroxide-inducible genes activator VF
HRK14_RS11740 (HRK14_11675) 2431122..2433212 - 2091 WP_033446218.1 ATP-dependent DNA helicase RecG -
HRK14_RS11745 (HRK14_11680) 2433228..2433614 - 387 WP_010930458.1 Rid family detoxifying hydrolase -
HRK14_RS11750 (HRK14_11685) 2433791..2436144 - 2354 Protein_2307 Pertactin autotransporter VF
HRK14_RS11755 (HRK14_11690) 2436308..2437111 - 804 WP_010930457.1 2,5-didehydrogluconate reductase DkgB -
HRK14_RS11760 (HRK14_11695) 2437183..2438303 - 1121 Protein_2309 MFS transporter -
HRK14_RS11765 (HRK14_11700) 2438405..2439307 + 903 WP_010930456.1 HTH-type transcriptional regulator DmlR VF
HRK14_RS11770 (HRK14_11705) 2439372..2440148 - 777 WP_003811187.1 ferredoxin--NADP reductase -
HRK14_RS11775 (HRK14_11710) 2440470..2441519 + 1050 WP_010930455.1 Fe(3+) ABC transporter substrate-binding protein -
HRK14_RS11780 (HRK14_11715) 2441643..2443313 + 1671 WP_010930454.1 iron ABC transporter permease -
HRK14_RS11785 (HRK14_11720) 2443318..2444112 + 795 WP_019248220.1 Sulfate/thiosulfate import ATP-binding protein CysA VF
HRK14_RS11790 (HRK14_11725) 2444211..2445161 + 951 WP_005012067.1 IS481 family transposase IS481v2 Transposase
HRK14_RS11795 (HRK14_11730) 2445181..2446086 - 906 WP_010930453.1 pirin family protein -
HRK14_RS11800 (HRK14_11735) 2446164..2446862 - 699 WP_003811176.1 pirin family protein -
HRK14_RS11805 (HRK14_11740) 2447022..2447966 + 945 WP_010930452.1 HTH-type transcriptional regulator YhaJ VF
HRK14_RS11810 (HRK14_11745) 2447976..2449463 - 1488 WP_010930451.1 DNA-binding transcriptional regulator NtrC VF
HRK14_RS11815 (HRK14_11750) 2449463..2450530 - 1068 WP_003811167.1 nitrogen regulation protein NR(II) -
HRK14_RS11820 (HRK14_11755) 2450594..2452006 - 1413 WP_003811164.1 type I glutamate--ammonia ligase -
HRK14_RS11825 (HRK14_11760) 2452192..2453412 - 1221 WP_010930450.1 Oxygen-independent coproporphyrinogen-III oxidase-like protein YqeR VF
HRK14_RS11830 (HRK14_11765) 2453434..2454384 - 951 WP_005012808.1 IS481 family transposase IS481v2 Transposase
HRK14_RS11835 (HRK14_11770) 2454483..2455124 - 642 WP_010930449.1 dITP/XTP pyrophosphatase VF
HRK14_RS11840 (HRK14_11775) 2455251..2457053 + 1803 WP_010930448.1 EAL domain-containing protein -
HRK14_RS11845 (HRK14_11780) 2457192..2458622 - 1431 Protein_2326 Methyl-accepting chemotaxis protein I VF
HRK14_RS11850 (HRK14_11785) 2458705..2459610 - 906 WP_003811152.1 LysR family transcriptional regulator -
HRK14_RS11855 (HRK14_11790) 2459792..2461168 + 1377 WP_010930446.1 MmgE/PrpD family protein -
HRK14_RS11860 (HRK14_11795) 2461335..2462075 - 741 WP_003811149.1 ribonuclease PH -
HRK14_RS11865 (HRK14_11800) 2462212..2463138 + 927 WP_003811148.1 YicC/YloC family endoribonuclease -
HRK14_RS11870 (HRK14_11805) 2463411..2463566 + 156 WP_010930445.1 hypothetical protein -
HRK14_RS19805 2463579..2463707 + 129 WP_010928840.1 hypothetical protein -
HRK14_RS11875 (HRK14_11810) 2463704..2463988 + 285 WP_010926696.1 helix-turn-helix domain-containing protein -
HRK14_RS11880 (HRK14_11815) 2464047..2465537 - 1491 WP_003811138.1 AMP nucleosidase -
HRK14_RS11885 (HRK14_11820) 2465782..2466381 + 600 WP_003811137.1 Murein DD-endopeptidase MepH VF
HRK14_RS11890 (HRK14_11825) 2466386..2467156 - 771 WP_003811135.1 3-beta-hydroxycholanate 3-dehydrogenase (NADP(+)) VF
HRK14_RS11895 (HRK14_11830) 2467394..2468107 + 714 WP_010930444.1 Cytochrome c4 VF
HRK14_RS11900 (HRK14_11835) 2468104..2469021 + 918 WP_010930443.1 c-type cytochrome -
HRK14_RS11905 (HRK14_11840) 2469157..2469789 + 633 WP_010930442.1 guanylate kinase -
HRK14_RS11910 (HRK14_11845) 2469831..2470034 + 204 WP_010930441.1 DNA-directed RNA polymerase subunit omega -
HRK14_RS11915 (HRK14_11850) 2470059..2472338 + 2280 WP_010930440.1 Bifunctional (p)ppGpp synthase/hydrolase SpoT VF
HRK14_RS11920 (HRK14_11855) 2472351..2473079 - 729 WP_003811113.1 Glutamine transport ATP-binding protein GlnQ VF
HRK14_RS11925 (HRK14_11860) 2473076..2473735 - 660 WP_003811112.1 glutamine ABC transporter permease GlnP -
HRK14_RS11930 (HRK14_11865) 2473804..2474556 - 753 WP_010930439.1 glutamine ABC transporter substrate-binding protein GlnH -
HRK14_RS11935 (HRK14_11870) 2474738..2475688 - 951 WP_005012067.1 IS481 family transposase IS481v2 Transposase
HRK14_RS11940 (HRK14_11875) 2475847..2476495 + 649 Protein_2346 site-2 protease family protein -
HRK14_RS11945 (HRK14_11880) 2476581..2477486 + 906 WP_033446216.1 4-hydroxy-tetrahydrodipicolinate synthase -
HRK14_RS11950 (HRK14_11885) 2477498..2478625 + 1128 WP_010930437.1 outer membrane protein assembly factor BamC -
HRK14_RS11955 (HRK14_11890) 2478714..2479328 - 615 WP_010930436.1 Major fimbrial subunit SMF-1 VF
HRK14_RS11960 (HRK14_11895) 2479983..2481170 - 1188 WP_010930435.1 cupin domain-containing protein -
HRK14_RS11965 (HRK14_11900) 2481167..2483764 - 2598 WP_033446228.1 DNA mismatch repair protein MutS -
HRK14_RS11970 (HRK14_11905) 2484019..2484234 + 216 WP_010930433.1 dodecin family protein -
HRK14_RS11975 (HRK14_11910) 2484690..2485244 - 555 WP_010930432.1 NAD(P)H-dependent oxidoreductase -
HRK14_RS11980 (HRK14_11915) 2485512..2486072 + 561 WP_010930431.1 membrane protein -
HRK14_RS11985 (HRK14_11920) 2486184..2487488 + 1305 WP_023853587.1 imelysin family protein -
HRK14_RS11990 (HRK14_11925) 2487485..2488996 + 1512 WP_019247498.1 di-heme oxidoredictase family protein -
HRK14_RS11995 (HRK14_11930) 2489048..2490103 + 1056 WP_224019495.1 imelysin family protein -
HRK14_RS12000 (HRK14_11935) 2490093..2491205 + 1113 WP_019249265.1 DUF1513 domain-containing protein -
HRK14_RS12005 (HRK14_11940) 2491304..2492253 + 950 Protein_2359 IS481-like element IS481 family transposase -
HRK14_RS12010 (HRK14_11945) 2492250..2492876 - 627 WP_010928449.1 L-threonylcarbamoyladenylate synthase -
HRK14_RS12015 (HRK14_11950) 2492936..2493787 + 852 WP_010930427.1 neutral zinc metallopeptidase -
HRK14_RS12020 (HRK14_11955) 2493891..2494490 + 600 WP_010930426.1 hypothetical protein -
HRK14_RS12025 (HRK14_11960) 2494487..2495251 + 765 WP_010930425.1 hypothetical protein -
HRK14_RS12030 (HRK14_11965) 2495321..2496271 - 951 WP_005013747.1 IS481 family transposase IS481 Transposase
HRK14_RS12035 (HRK14_11970) 2496370..2496978 - 609 WP_010930424.1 recombination mediator RecR -
HRK14_RS12040 (HRK14_11975) 2497029..2497355 - 327 WP_010930423.1 YbaB/EbfC family nucleoid-associated protein -
HRK14_RS12045 (HRK14_11980) 2497402..2499492 - 2091 WP_010930422.1 DNA polymerase III subunit gamma/tau -
HRK14_RS12055 (HRK14_11990) 2500287..2503691 - 3405 WP_010930421.1 UvrD-helicase domain-containing protein -
HRK14_RS12060 (HRK14_11995) 2503704..2506364 - 2661 WP_010930420.1 PD-(D/E)XK nuclease family protein -
HRK14_RS12065 (HRK14_12000) 2506386..2506532 - 147 WP_004568212.1 hypothetical protein -
HRK14_RS12070 (HRK14_12005) 2506568..2507770 - 1203 WP_010930419.1 MFS transporter -
HRK14_RS12080 (HRK14_12015) 2508457..2509569 + 1113 WP_023994932.1 D-alanyl-D-alanine endopeptidase -

Similar MGE(s)


Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.

Detail Organism MGE type Related TA Genome accession Coordinates Mash
distance