MGE detailed information
MGE type: Conjugative plasmid MGE length: 79154 bp
Accession: NZ_CP054047 Location: 1..79154 Organism: Yersinia massiliensis strain 2011N-4075 Replicon: plasmid unnamed2
Accession: NZ_CP054047 Location: 1..79154 Organism: Yersinia massiliensis strain 2011N-4075 Replicon: plasmid unnamed2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HRD68_RS00665 () | 82..609 | + | 528 | WP_172986747.1 | hypothetical protein | - |
| HRD68_RS00670 () | 766..2088 | + | 1323 | WP_172986748.1 | conjugal transfer protein TrbA | - |
| HRD68_RS00675 () | 2111..3112 | + | 1002 | WP_172986749.1 | hypothetical protein | - |
| HRD68_RS00680 () | 3290..5347 | + | 2058 | WP_172986819.1 | conjugal transfer protein TrbC | - |
| HRD68_RS00685 () | 5759..6295 | + | 537 | WP_172986750.1 | Phospholipase D | VF |
| HRD68_RS00690 () | 6305..6622 | + | 318 | WP_172986751.1 | hypothetical protein | - |
| HRD68_RS00695 () | 6686..8641 | - | 1956 | WP_172986752.1 | Protein TraI | Relaxase |
| HRD68_RS00700 () | 8638..8988 | - | 351 | WP_050074462.1 | mobilization protein | - |
| HRD68_RS00705 () | 9257..9595 | + | 339 | WP_172986753.1 | mobilization protein MobC | - |
| HRD68_RS00710 () | 9726..10037 | - | 312 | WP_172986754.1 | hypothetical protein | - |
| HRD68_RS00715 () | 10082..10903 | - | 822 | WP_145544671.1 | DUF945 domain-containing protein | - |
| HRD68_RS00720 () | 11395..11745 | - | 351 | WP_172986755.1 | DUF3085 domain-containing protein | - |
| HRD68_RS00725 () | 11816..12187 | - | 372 | WP_172986756.1 | hypothetical protein | - |
| HRD68_RS00730 () | 12242..12484 | - | 243 | WP_172986757.1 | hypothetical protein | - |
| HRD68_RS00735 () | 12571..12909 | - | 339 | WP_172986758.1 | hypothetical protein | - |
| HRD68_RS00740 () | 12960..13205 | - | 246 | WP_172986759.1 | hypothetical protein | - |
| HRD68_RS00745 () | 13855..14127 | - | 273 | WP_172986760.1 | hypothetical protein | - |
| HRD68_RS00750 () | 14117..14878 | - | 762 | WP_172986761.1 | plasmid SOS inhibition protein A | - |
| HRD68_RS00755 () | 14875..15321 | - | 447 | WP_172986762.1 | conjugation system SOS inhibitor PsiB | - |
| HRD68_RS00760 () | 15360..17375 | - | 2016 | WP_172986763.1 | ParB/RepB/Spo0J family partition protein | - |
| HRD68_RS00765 () | 17468..17749 | - | 282 | WP_172986764.1 | hypothetical protein | - |
| HRD68_RS00770 () | 18450..18650 | - | 201 | WP_172986765.1 | hypothetical protein | - |
| HRD68_RS00775 () | 18693..19199 | - | 507 | WP_172986820.1 | antirestriction protein ArdA | - |
| HRD68_RS00780 () | 19221..19457 | - | 237 | Protein_23 | DUF1472 domain-containing protein | - |
| HRD68_RS00785 () | 20332..20895 | - | 564 | WP_172986766.1 | helix-turn-helix transcriptional regulator | - |
| HRD68_RS00790 () | 20995..21399 | - | 405 | WP_172986767.1 | plasmid partitioning/stability family protein | - |
| HRD68_RS00795 () | 21406..22383 | - | 978 | WP_172986768.1 | StbA family protein | - |
| HRD68_RS00800 () | 22640..23140 | - | 501 | WP_172986769.1 | hypothetical protein | - |
| HRD68_RS00805 () | 23568..23897 | - | 330 | WP_049615233.1 | HigA family addiction module antidote protein | Antitoxin Detail |
| HRD68_RS00810 () | 23909..24199 | - | 291 | WP_172986770.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| HRD68_RS00815 () | 24337..25158 | - | 822 | WP_172986771.1 | N-6 DNA methylase | - |
| HRD68_RS00820 () | 25535..25960 | + | 426 | WP_172986772.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| HRD68_RS00825 () | 25960..27216 | + | 1257 | WP_120806773.1 | translesion error-prone DNA polymerase V subunit UmuC | - |
| HRD68_RS00830 () | 27675..27902 | - | 228 | WP_145544398.1 | hypothetical protein | - |
| HRD68_RS00835 () | 27952..28569 | - | 618 | WP_172986821.1 | ParA family protein | - |
| HRD68_RS00840 () | 28947..29192 | - | 246 | WP_120806775.1 | helix-turn-helix domain-containing protein | - |
| HRD68_RS00845 () | 29354..30694 | - | 1341 | WP_172986773.1 | hypothetical protein | - |
| HRD68_RS00850 () | 30704..31291 | - | 588 | WP_172986774.1 | hypothetical protein | - |
| HRD68_RS00855 () | 31582..32229 | + | 648 | WP_172986775.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| HRD68_RS00860 () | 32584..33465 | + | 882 | WP_172986776.1 | restriction endonuclease | - |
| HRD68_RS00865 () | 34471..34905 | - | 435 | WP_172986777.1 | hypothetical protein | - |
| HRD68_RS00870 () | 35111..36448 | - | 1338 | WP_172986778.1 | hypothetical protein | - |
| HRD68_RS00875 () | 36712..37443 | + | 732 | WP_172986779.1 | hypothetical protein | - |
| HRD68_RS00880 () | 37454..38239 | + | 786 | WP_172986780.1 | hypothetical protein | - |
| HRD68_RS00885 () | 38286..38870 | - | 585 | WP_172986781.1 | hypothetical protein | - |
| HRD68_RS00890 () | 39361..40014 | + | 654 | WP_172986782.1 | hypothetical protein | - |
| HRD68_RS00895 () | 40259..40738 | + | 480 | WP_172986783.1 | Major exported protein | VF |
| HRD68_RS00900 () | 41561..42274 | + | 714 | WP_172986784.1 | replication initiation protein | - |
| HRD68_RS00905 () | 43140..44075 | - | 936 | WP_172986785.1 | hypothetical protein | - |
| HRD68_RS00910 () | 44841..45791 | - | 951 | WP_172986786.1 | Replication protein | - |
| HRD68_RS00915 () | 46961..47443 | + | 483 | WP_172986787.1 | antitermination protein NusG | - |
| HRD68_RS00920 () | 47500..47685 | + | 186 | WP_172986788.1 | hypothetical protein | - |
| HRD68_RS00925 () | 47837..48019 | + | 183 | WP_172986789.1 | hypothetical protein | - |
| HRD68_RS00930 () | 48016..49050 | + | 1035 | WP_172986790.1 | hypothetical protein | VF |
| HRD68_RS00935 () | 49050..49472 | + | 423 | WP_172986791.1 | hypothetical protein | VF |
| HRD68_RS00940 () | 49498..51135 | + | 1638 | WP_172986792.1 | Outer membrane lipoprotein BfpB | VF |
| HRD68_RS00945 () | 51356..52666 | + | 1311 | WP_172986793.1 | type 4b pilus protein PilO2 | - |
| HRD68_RS00950 () | 52653..53228 | + | 576 | WP_172986794.1 | hypothetical protein | VF |
| HRD68_RS00955 () | 53234..54724 | + | 1491 | WP_172986795.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| HRD68_RS00960 () | 54721..55845 | + | 1125 | WP_172986796.1 | hypothetical protein | VF |
| HRD68_RS00965 () | 55881..56477 | + | 597 | WP_172986797.1 | hypothetical protein | VF |
| HRD68_RS00970 () | 56532..57017 | + | 486 | WP_172986798.1 | hypothetical protein | VF |
| HRD68_RS00975 () | 57017..57670 | + | 654 | WP_172986799.1 | Leader peptidase PppA | VF |
| HRD68_RS00980 () | 57667..58857 | + | 1191 | WP_172986800.1 | hypothetical protein | VF |
| HRD68_RS00985 () | 59199..59867 | + | 669 | WP_172986801.1 | hypothetical protein | - |
| HRD68_RS00990 () | 59955..60410 | + | 456 | WP_172986802.1 | DotD/TraH family lipoprotein | - |
| HRD68_RS00995 () | 60407..61195 | + | 789 | WP_172986803.1 | hypothetical protein | VF |
| HRD68_RS01000 () | 61215..62372 | + | 1158 | WP_172986804.1 | putative protein YggR | VF |
| HRD68_RS01005 () | 62372..62638 | + | 267 | WP_172986805.1 | IcmT/TraK family protein | - |
| HRD68_RS01010 () | 62697..65885 | + | 3189 | WP_172986806.1 | hypothetical protein | - |
| HRD68_RS01015 () | 65895..66380 | + | 486 | WP_172986807.1 | hypothetical protein | - |
| HRD68_RS01020 () | 66465..67139 | + | 675 | WP_172986808.1 | hypothetical protein | VF |
| HRD68_RS01025 () | 67142..68152 | + | 1011 | WP_172986809.1 | hypothetical protein | VF |
| HRD68_RS01030 () | 68157..69383 | + | 1227 | WP_172986810.1 | conjugal transfer protein TraO | - |
| HRD68_RS01035 () | 69383..70120 | + | 738 | WP_172986811.1 | hypothetical protein | - |
| HRD68_RS01040 () | 70129..70659 | + | 531 | WP_172986812.1 | conjugal transfer protein TraQ | - |
| HRD68_RS01045 () | 70674..71078 | + | 405 | WP_172986813.1 | hypothetical protein | - |
| HRD68_RS01050 () | 71170..71775 | + | 606 | WP_172986814.1 | hypothetical protein | - |
| HRD68_RS01055 () | 71778..74852 | + | 3075 | WP_172986815.1 | ATP-binding protein | - |
| HRD68_RS01060 () | 75043..76272 | + | 1230 | WP_172986816.1 | conjugal transfer protein TraW | - |
| HRD68_RS01065 () | 76265..76864 | + | 600 | WP_172986817.1 | conjugal transfer protein TraX | - |
| HRD68_RS01070 () | 76977..79109 | + | 2133 | WP_172986818.1 | DotA/TraY family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|