MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 135614 bp
Accession: NZ_CP053897 Location: 1..135614 Organism: Providencia rettgeri strain YPR31 Replicon: plasmid pYPR31
Accession: NZ_CP053897 Location: 1..135614 Organism: Providencia rettgeri strain YPR31 Replicon: plasmid pYPR31
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HRD55_RS21325 () | 1277..1693 | + | 417 | WP_072070751.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| HRD55_RS21330 () | 1693..2955 | + | 1263 | WP_072070750.1 | translesion error-prone DNA polymerase V subunit UmuC | - |
| HRD55_RS21335 () | 3307..4353 | + | 1047 | WP_072070749.1 | ParB/RepB/Spo0J family partition protein | - |
| HRD55_RS21340 () | 4356..4700 | + | 345 | WP_023159966.1 | single-stranded DNA-binding protein | - |
| HRD55_RS21345 () | 4693..5115 | + | 423 | WP_159242432.1 | hypothetical protein | - |
| HRD55_RS21350 () | 5125..5517 | + | 393 | WP_048821774.1 | hypothetical protein | - |
| HRD55_RS21355 () | 5798..6277 | + | 480 | WP_159242433.1 | Hcp family type VI secretion system effector | - |
| HRD55_RS21360 () | 6286..6864 | + | 579 | WP_048822182.1 | hypothetical protein | - |
| HRD55_RS21365 () | 7625..7993 | + | 369 | WP_048821769.1 | hypothetical protein | - |
| HRD55_RS21370 () | 8091..8318 | - | 228 | WP_048821767.1 | hypothetical protein | - |
| HRD55_RS21375 () | 8435..9058 | - | 624 | WP_023159958.1 | AAA family ATPase | - |
| HRD55_RS21380 () | 9343..9588 | + | 246 | WP_023159984.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| HRD55_RS21385 () | 9588..9920 | + | 333 | WP_023159957.1 | endoribonuclease MazF | Toxin Detail |
| HRD55_RS21390 () | 9951..10331 | + | 381 | WP_048821763.1 | hypothetical protein | - |
| HRD55_RS21395 () | 10420..10560 | - | 141 | WP_072022937.1 | type I toxin-antitoxin system Hok family toxin | - |
| HRD55_RS21400 () | 10880..11338 | - | 459 | WP_048821762.1 | hypothetical protein | - |
| HRD55_RS21405 () | 11437..11691 | - | 255 | WP_048821760.1 | hypothetical protein | - |
| HRD55_RS21410 () | 11730..11999 | - | 270 | WP_048821758.1 | hypothetical protein | - |
| HRD55_RS21415 () | 12293..13246 | + | 954 | WP_048821757.1 | site-specific integrase | - |
| HRD55_RS21420 () | 13515..14336 | + | 822 | WP_001029679.1 | TnsA endonuclease N-terminal domain-containing protein | - |
| HRD55_RS21425 () | 14323..16431 | + | 2109 | WP_000267723.1 | DDE-type integrase/transposase/recombinase | - |
| HRD55_RS21430 () | 16428..18095 | + | 1668 | WP_001276994.1 | AAA family ATPase | - |
| HRD55_RS21435 () | 18098..18747 | + | 650 | Protein_22 | TniQ family protein | - |
| HRD55_RS21440 () | 18898..20472 | - | 1575 | WP_071538080.1 | PAS domain-containing methyl-accepting chemotaxis protein | - |
| HRD55_RS21445 () | 20497..21201 | + | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| HRD55_RS21450 () | 21651..23126 | + | 1476 | WP_000052512.1 | ABC-F type ribosomal protection protein Msr(E) | - |
| HRD55_RS21455 () | 23182..24066 | + | 885 | WP_000155092.1 | Mph(E) family macrolide 2'-phosphotransferase | - |
| HRD55_RS21460 () | 24256..24567 | - | 312 | WP_140173007.1 | recombinase family protein | - |
| HRD55_RS21465 () | 24603..25307 | + | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| HRD55_RS21470 () | 25497..26312 | - | 816 | WP_000018329.1 | aminoglycoside O-phosphotransferase APH(3')-Ia | - |
| HRD55_RS21475 () | 26463..27167 | + | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| HRD55_RS21480 () | 27221..27655 | + | 435 | Protein_31 | Mu transposase C-terminal domain-containing protein | - |
| HRD55_RS21485 () | 27658..28518 | + | 861 | WP_000344784.1 | TniB family NTP-binding protein | - |
| HRD55_RS21490 () | 28569..30113 | - | 1545 | WP_000287615.1 | IS3 family transposase | - |
| HRD55_RS21495 () | 30236..31759 | + | 1524 | WP_001324342.1 | IS21-like element IS1326 family transposase | - |
| HRD55_RS21500 () | 31746..32531 | + | 786 | WP_000983249.1 | IS21-like element IS1326 family helper ATPase IstB | - |
| HRD55_RS21505 () | 33066..33566 | - | 501 | WP_000376623.1 | GNAT family N-acetyltransferase | - |
| HRD55_RS21510 () | 33694..34533 | - | 840 | WP_000259031.1 | sulfonamide-resistant dihydropteroate synthase Sul1 | - |
| HRD55_RS21515 () | 34527..34862 | - | 336 | WP_052238321.1 | ethidium bromide resistance protein | - |
| HRD55_RS21520 () | 34755..35120 | + | 366 | WP_025999322.1 | hydrogenase maturation nickel metallochaperone HypA | - |
| HRD55_RS21525 () | 35124..35999 | - | 876 | WP_004193231.1 | LysR family transcriptional regulator AmpR | - |
| HRD55_RS21530 () | 36110..37249 | + | 1140 | WP_004236386.1 | class C beta-lactamase DHA-1 | - |
| HRD55_RS21535 () | 37444..37830 | + | 387 | Protein_42 | hypothetical protein | - |
| HRD55_RS21540 () | 38062..39603 | - | 1542 | WP_000050481.1 | IS91 family transposase | - |
| HRD55_RS21545 () | 40008..40846 | - | 839 | Protein_44 | sulfonamide-resistant dihydropteroate synthase Sul1 | - |
| HRD55_RS21550 () | 40840..41187 | - | 348 | WP_000679427.1 | quaternary ammonium compound efflux SMR transporter QacE delta 1 | - |
| HRD55_RS21555 () | 41410..41862 | - | 453 | WP_001749986.1 | NAD(+)--rifampin ADP-ribosyltransferase Arr-3 | - |
| HRD55_RS21560 () | 41959..42513 | - | 555 | WP_063840321.1 | fluoroquinolone-acetylating aminoglycoside 6'-N-acetyltransferase AAC(6')-Ib-cr5 | - |
| HRD55_RS21565 () | 42805..43818 | + | 1014 | WP_000845054.1 | class 1 integron integrase IntI1 | - |
| HRD55_RS21570 () | 44021..44371 | + | 351 | WP_000454193.1 | DUF3330 domain-containing protein | - |
| HRD55_RS21575 () | 44497..45057 | + | 561 | WP_000147567.1 | recombinase family protein | - |
| HRD55_RS21580 () | 45060..47985 | + | 2926 | Protein_51 | Tn3 family transposase | - |
| HRD55_RS21585 () | 47994..48395 | + | 402 | WP_046788546.1 | hypothetical protein | - |
| HRD55_RS21590 () | 48480..49184 | - | 705 | WP_001067784.1 | IS6-like element IS1006 family transposase | - |
| HRD55_RS21595 () | 49248..50078 | + | 831 | Protein_54 | IS91-like element ISVsa3 family transposase | - |
| HRD55_RS21600 () | 50109..50993 | + | 885 | WP_001447541.1 | DUF3363 domain-containing protein | - |
| HRD55_RS21605 () | 51216..52430 | + | 1215 | WP_000214122.1 | chloramphenicol/florfenicol efflux MFS transporter FloR | - |
| HRD55_RS21610 () | 52458..52763 | + | 306 | WP_001255015.1 | LysR family transcriptional regulator | - |
| HRD55_RS21615 () | 52875..54368 | + | 1494 | WP_015344975.1 | IS91-like element ISVsa3 family transposase | - |
| HRD55_RS21620 () | 54399..54641 | + | 243 | WP_172767591.1 | hypothetical protein | - |
| HRD55_RS21625 () | 54589..55344 | + | 756 | WP_172767592.1 | IS6 family transposase | - |
| HRD55_RS21630 () | 55395..55760 | - | 366 | Protein_61 | AAC(3) family N-acetyltransferase | - |
| HRD55_RS21635 () | 55766..56791 | - | 1026 | WP_000742814.1 | aminoglycoside O-phosphotransferase APH(4)-Ia | - |
| HRD55_RS21640 () | 57020..57796 | - | 777 | WP_001199192.1 | aminoglycoside N-acetyltransferase AAC(3)-IVa | - |
| HRD55_RS21645 () | 57910..58614 | + | 705 | WP_001067858.1 | IS6-like element IS26 family transposase | - |
| HRD55_RS21650 () | 58668..59294 | + | 627 | Protein_65 | IS30-like element ISAba125 family transposase | - |
| HRD55_RS21655 () | 59395..60207 | + | 813 | WP_004201164.1 | subclass B1 metallo-beta-lactamase NDM-1 | - |
| HRD55_RS21660 () | 60211..60576 | + | 366 | WP_004201167.1 | bleomycin binding protein Ble-MBL | - |
| HRD55_RS21665 () | 60581..61219 | + | 639 | WP_004201168.1 | phosphoribosylanthranilate isomerase | - |
| HRD55_RS21670 () | 61230..62261 | - | 1032 | WP_004201169.1 | protein-disulfide reductase DsbD N-terminal domain-containing protein | - |
| HRD55_RS21675 () | 62266..62595 | - | 330 | WP_004201171.1 | divalent-cation tolerance protein CutA | - |
| HRD55_RS21680 () | 62789..63079 | + | 291 | WP_004201172.1 | co-chaperone GroES | - |
| HRD55_RS21685 () | 63135..64775 | + | 1641 | WP_004201176.1 | chaperonin GroEL | - |
| HRD55_RS21690 () | 64964..66493 | + | 1530 | WP_015056392.1 | IS91 family transposase | - |
| HRD55_RS21695 () | 66704..66988 | - | 285 | WP_015056391.1 | hypothetical protein | - |
| HRD55_RS21700 () | 67281..67685 | + | 405 | Protein_75 | IS30 family transposase | - |
| HRD55_RS21705 () | 67750..68447 | + | 698 | Protein_76 | IS6 family transposase | - |
| HRD55_RS21710 () | 68553..69757 | - | 1205 | Protein_77 | chromate efflux transporter | - |
| HRD55_RS21715 () | 69913..70116 | - | 204 | WP_000376616.1 | hypothetical protein | - |
| HRD55_RS21720 () | 70244..71079 | - | 836 | Protein_79 | sulfonamide-resistant dihydropteroate synthase Sul1 | - |
| HRD55_RS21725 () | 71073..71420 | - | 348 | WP_000679427.1 | quaternary ammonium compound efflux SMR transporter QacE delta 1 | - |
| HRD55_RS21730 () | 71584..72375 | - | 792 | WP_001206316.1 | ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1 | - |
| HRD55_RS21735 () | 72392..72865 | - | 474 | WP_000777554.1 | trimethoprim-resistant dihydrofolate reductase DfrA1 | - |
| HRD55_RS21740 () | 72862..73707 | - | 846 | WP_070342364.1 | lincosamide nucleotidyltransferase Lnu(F) | - |
| HRD55_RS21745 () | 74093..74629 | + | 537 | WP_000071896.1 | class 2 integron integrase IntI2 | - |
| HRD55_RS21750 () | 74744..75070 | + | 327 | WP_000497519.1 | tyrosine-type recombinase/integrase | - |
| HRD55_RS21755 () | 75258..75497 | - | 240 | WP_001353740.1 | DUF1819 family protein | - |
| HRD55_RS21760 () | 76006..76704 | + | 699 | WP_072070783.1 | DUF4365 domain-containing protein | - |
| HRD55_RS21765 () | 76725..77732 | + | 1008 | WP_159242424.1 | hypothetical protein | - |
| HRD55_RS21770 () | 78225..78974 | + | 750 | WP_071547986.1 | signal peptidase I | - |
| HRD55_RS21775 () | 78958..79311 | + | 354 | WP_135017213.1 | hypothetical protein | - |
| HRD55_RS21780 () | 79346..79867 | + | 522 | WP_082151845.1 | hypothetical protein | - |
| HRD55_RS21785 () | 79885..80820 | + | 936 | WP_023159951.1 | restriction endonuclease | - |
| HRD55_RS21790 () | 80932..81870 | + | 939 | WP_072070779.1 | hypothetical protein | - |
| HRD55_RS21795 () | 81950..82507 | + | 558 | WP_072070778.1 | hypothetical protein | - |
| HRD55_RS21800 () | 82554..82868 | + | 315 | WP_072070777.1 | hypothetical protein | - |
| HRD55_RS21805 () | 82920..83348 | - | 429 | WP_072070776.1 | hypothetical protein | - |
| HRD55_RS21810 () | 83410..84939 | - | 1530 | WP_159242426.1 | UvrD-helicase domain-containing protein | - |
| HRD55_RS21815 () | 85091..85417 | - | 327 | WP_094301230.1 | hypothetical protein | - |
| HRD55_RS21820 () | 85564..86370 | - | 807 | WP_048607623.1 | DsbA family protein | - |
| HRD55_RS21825 () | 86387..87028 | - | 642 | WP_048607622.1 | hypothetical protein | - |
| HRD55_RS21830 () | 87059..89560 | + | 2502 | WP_072070774.1 | TraI domain-containing protein | - |
| HRD55_RS21835 () | 89557..91470 | + | 1914 | WP_023159939.1 | conjugative transfer system coupling protein TraD | - |
| HRD55_RS21840 () | 91471..91821 | + | 351 | WP_072070773.1 | hypothetical protein | - |
| HRD55_RS21845 () | 91833..92492 | + | 660 | WP_023159938.1 | DUF4400 domain-containing protein | - |
| HRD55_RS21850 () | 92575..92856 | + | 282 | WP_072070772.1 | hypothetical protein | - |
| HRD55_RS21855 () | 92853..93644 | + | 792 | WP_023159937.1 | DsbA family protein | - |
| HRD55_RS21860 () | 93666..93950 | + | 285 | WP_023159936.1 | type IV conjugative transfer system protein TraL | - |
| HRD55_RS21865 () | 93950..94603 | + | 654 | WP_023159935.1 | conjugal transfer pilus assembly protein TraE | - |
| HRD55_RS21870 () | 94596..95597 | + | 1002 | WP_023159934.1 | type-F conjugative transfer system secretin TraK | - |
| HRD55_RS21875 () | 95601..96893 | + | 1293 | WP_023159933.1 | TraB/VirB10 family protein | - |
| HRD55_RS21880 () | 96910..97422 | + | 513 | WP_023159932.1 | type IV conjugative transfer system lipoprotein TraV | - |
| HRD55_RS21885 () | 97553..98317 | + | 765 | WP_023159931.1 | DsbC family protein | - |
| HRD55_RS21890 () | 98317..100803 | + | 2487 | WP_023159930.1 | type IV secretion system protein TraC | - |
| HRD55_RS21895 () | 100787..101065 | + | 279 | WP_141240700.1 | hypothetical protein | - |
| HRD55_RS21900 () | 101067..101582 | + | 516 | WP_072070769.1 | signal peptidase I | - |
| HRD55_RS21905 () | 101576..102796 | + | 1221 | WP_023159929.1 | K12061 conjugal transfer pilus assembly protein TraW | - |
| HRD55_RS21910 () | 102796..103851 | + | 1056 | WP_023159928.1 | TraU family protein | - |
| HRD55_RS21915 () | 103905..104540 | + | 636 | WP_023159927.1 | hypothetical protein | - |
| HRD55_RS21920 () | 104605..105300 | - | 696 | WP_072070768.1 | hypothetical protein | - |
| HRD55_RS21925 () | 105551..106279 | + | 729 | WP_023159925.1 | hypothetical protein | - |
| HRD55_RS21930 () | 106410..106907 | + | 498 | WP_072070767.1 | hypothetical protein | - |
| HRD55_RS21935 () | 106985..108274 | + | 1290 | WP_159242429.1 | recombinase RecT | - |
| HRD55_RS21940 () | 108323..109417 | + | 1095 | WP_023159923.1 | YqaJ viral recombinase family protein | - |
| HRD55_RS21945 () | 109455..109823 | + | 369 | WP_072070766.1 | hypothetical protein | - |
| HRD55_RS21950 () | 109877..110884 | + | 1008 | WP_023159922.1 | MoxR family ATPase | - |
| HRD55_RS21955 () | 110983..112170 | + | 1188 | WP_023159921.1 | DUF3150 domain-containing protein | - |
| HRD55_RS21960 () | 112235..114175 | + | 1941 | WP_072070765.1 | VWA domain-containing protein | - |
| HRD55_RS21965 () | 114412..115443 | + | 1032 | WP_023159919.1 | conjugal transfer protein TraF | - |
| HRD55_RS21970 () | 115459..116868 | + | 1410 | WP_072070764.1 | conjugal transfer protein TraH | - |
| HRD55_RS21975 () | 116888..120121 | + | 3234 | WP_023159917.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| HRD55_RS21980 () | 120180..120353 | - | 174 | WP_159242430.1 | hypothetical protein | - |
| HRD55_RS21985 () | 120593..123364 | + | 2772 | WP_023159916.1 | conjugal transfer mating pair stabilization protein TraN | - |
| HRD55_RS21990 () | 123399..124238 | - | 840 | WP_023159983.1 | hypothetical protein | - |
| HRD55_RS21995 () | 124238..124798 | - | 561 | WP_023159982.1 | hypothetical protein | - |
| HRD55_RS22000 () | 124795..125349 | - | 555 | WP_072070760.1 | hypothetical protein | - |
| HRD55_RS22005 () | 125339..125887 | - | 549 | WP_023159981.1 | transglycosylase SLT domain-containing protein | - |
| HRD55_RS22010 () | 126374..126832 | + | 459 | WP_023159980.1 | hypothetical protein | - |
| HRD55_RS22015 () | 127168..127587 | - | 420 | WP_023159979.1 | hypothetical protein | - |
| HRD55_RS22020 () | 127911..128723 | + | 813 | WP_072070759.1 | DUF4942 domain-containing protein | - |
| HRD55_RS22025 () | 129020..129979 | + | 960 | WP_071547977.1 | recombinase | - |
| HRD55_RS22030 () | 129984..130364 | + | 381 | WP_072070758.1 | hypothetical protein | - |
| HRD55_RS22035 () | 130375..130866 | + | 492 | WP_023159976.1 | hypothetical protein | - |
| HRD55_RS22040 () | 132202..133038 | + | 837 | WP_072070757.1 | replication initiation protein | - |
| HRD55_RS22045 () | 133041..133268 | + | 228 | WP_071547973.1 | hypothetical protein | - |
| HRD55_RS22050 () | 133530..134363 | + | 834 | WP_048609121.1 | hypothetical protein | - |
| HRD55_RS22055 () | 134360..134656 | + | 297 | WP_141240731.1 | hypothetical protein | - |
| HRD55_RS22060 () | 134653..135078 | + | 426 | WP_072070754.1 | hypothetical protein | - |
| HRD55_RS22065 () | 135095..135451 | + | 357 | WP_072070753.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|