MGE detailed information
MGE type: Conjugative plasmid MGE length: 88060 bp
Accession: NZ_CP053754 Location: 1..88060 Organism: Shigella sonnei strain 506 Replicon: plasmid pMHMC-003
Accession: NZ_CP053754 Location: 1..88060 Organism: Shigella sonnei strain 506 Replicon: plasmid pMHMC-003
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| COO90_RS26185 (290) | 290..637 | - | 348 | WP_016231295.1 | DUF6404 family protein | - |
| COO90_RS26190 (766) | 766..1101 | + | 336 | WP_001080734.1 | colicin 1A immunity protein | - |
| COO90_RS26195 (1123) | 1123..3003 | - | 1881 | WP_001283344.1 | colicin Ia central receptor-binding domain-containing protein | - |
| COO90_RS26200 (3282) | 3282..4628 | - | 1347 | WP_254103230.1 | protein YagA | - |
| COO90_RS26205 (4982) | 4982..5584 | + | 603 | WP_000517692.1 | ProQ/FINO family protein | - |
| COO90_RS26210 (5640) | 5640..6149 | + | 510 | WP_000045394.1 | hypothetical protein | - |
| COO90_RS26215 (7218) | 7218..8249 | - | 1032 | WP_048257187.1 | plasmid replication initiator RepA | - |
| COO90_RS26220 (9207) | 9207..9365 | + | 159 | Protein_8 | ash family protein | - |
| COO90_RS26225 (9403) | 9403..9690 | + | 288 | WP_000074855.1 | conjugal transfer protein TraA | - |
| COO90_RS26230 (10132) | 10132..10665 | + | 534 | WP_001303319.1 | transcription termination/antitermination NusG family protein | - |
| COO90_RS26235 (10919) | 10919..11602 | + | 684 | WP_000213859.1 | conjugal transfer protein TraC | - |
| COO90_RS26240 (11775) | 11775..12326 | + | 552 | WP_000744644.1 | hypothetical protein | - |
| COO90_RS26245 (12488) | 12488..12742 | + | 255 | WP_001136187.1 | PilI type IV pilus biogenesis protein | - |
| COO90_RS26250 (12909) | 12909..13205 | + | 297 | WP_050571830.1 | hypothetical protein | - |
| COO90_RS26255 (13829) | 13829..14896 | + | 1068 | WP_012783947.1 | hypothetical protein | VF |
| COO90_RS26260 (14896) | 14896..15333 | + | 438 | WP_000539807.1 | hypothetical protein | VF |
| COO90_RS26265 (15347) | 15347..17029 | + | 1683 | WP_000748143.1 | Outer membrane lipoprotein BfpB | VF |
| COO90_RS26270 (17022) | 17022..18317 | + | 1296 | WP_001388364.1 | type 4b pilus protein PilO2 | - |
| COO90_RS26275 (18304) | 18304..18756 | + | 453 | WP_001247870.1 | hypothetical protein | VF |
| COO90_RS26280 (18767) | 18767..20320 | + | 1554 | WP_001492932.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| COO90_RS26285 (20333) | 20333..21430 | + | 1098 | WP_001492931.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| COO90_RS26290 (21448) | 21448..22062 | + | 615 | WP_001542527.1 | hypothetical protein | VF |
| COO90_RS26295 (22072) | 22072..22632 | + | 561 | WP_000014116.1 | hypothetical protein | VF |
| COO90_RS26300 (22617) | 22617..23273 | + | 657 | WP_001193553.1 | hypothetical protein | VF |
| COO90_RS26305 (23273) | 23273..24361 | + | 1089 | Protein_25 | hypothetical protein | VF |
| COO90_RS26310 (25513) | 25513..25686 | - | 174 | WP_254103232.1 | hypothetical protein | - |
| COO90_RS26315 (25798) | 25798..26951 | + | 1154 | Protein_27 | site-specific integrase | - |
| COO90_RS26320 (27102) | 27102..27926 | + | 825 | WP_001238932.1 | conjugal transfer protein TraE | - |
| COO90_RS26325 (28012) | 28012..29214 | + | 1203 | WP_000976353.1 | conjugal transfer protein TraF | - |
| COO90_RS26330 (29274) | 29274..29858 | + | 585 | WP_000977522.1 | histidine phosphatase family protein | - |
| COO90_RS26335 (30252) | 30252..30710 | + | 459 | WP_001079808.1 | hypothetical protein | VF |
| COO90_RS26340 (30707) | 30707..31525 | + | 819 | WP_000646098.1 | hypothetical protein | VF |
| COO90_RS26345 (31522) | 31522..32670 | + | 1149 | WP_001024972.1 | putative protein YggR | VF |
| COO90_RS26350 (32667) | 32667..32957 | + | 291 | WP_001299214.1 | hypothetical protein | - |
| COO90_RS26355 (32972) | 32972..33523 | + | 552 | WP_000014583.1 | Phospholipase D | VF |
| COO90_RS26360 (33613) | 33613..37380 | + | 3768 | WP_001141527.1 | DUF5710 domain-containing protein | - |
| COO90_RS26365 (37398) | 37398..37745 | + | 348 | WP_001055900.1 | conjugal transfer protein | - |
| COO90_RS26370 (37742) | 37742..38434 | + | 693 | WP_000138550.1 | DotI/IcmL family type IV secretion protein | - |
| COO90_RS26375 (38445) | 38445..39428 | + | 984 | WP_001191877.1 | hypothetical protein | VF |
| COO90_RS26380 (39431) | 39431..40720 | + | 1290 | WP_042004726.1 | conjugal transfer protein TraO | - |
| COO90_RS26385 (40720) | 40720..41424 | + | 705 | WP_000801920.1 | IncI1-type conjugal transfer protein TraP | - |
| COO90_RS26390 (41424) | 41424..41951 | + | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| COO90_RS26395 (42002) | 42002..42406 | + | 405 | WP_000086965.1 | IncI1-type conjugal transfer protein TraR | - |
| COO90_RS26400 (42470) | 42470..42658 | + | 189 | WP_001277253.1 | putative conjugal transfer protein TraS | - |
| COO90_RS26405 (42642) | 42642..43442 | + | 801 | WP_001164784.1 | IncI1-type conjugal transfer protein TraT | - |
| COO90_RS26410 (43532) | 43532..46576 | + | 3045 | WP_001024789.1 | IncI1-type conjugal transfer protein TraU | - |
| COO90_RS26415 (46576) | 46576..47190 | + | 615 | WP_000337399.1 | IncI1-type conjugal transfer protein TraV | - |
| COO90_RS26420 (47157) | 47157..48359 | + | 1203 | WP_042004725.1 | IncI1-type conjugal transfer protein TraW | - |
| COO90_RS26425 (48388) | 48388..48972 | + | 585 | WP_001037987.1 | IncI1-type conjugal transfer protein TraX | - |
| COO90_RS26430 (49069) | 49069..51237 | + | 2169 | WP_000698357.1 | DotA/TraY family protein | - |
| COO90_RS26435 (51311) | 51311..51961 | + | 651 | WP_001178506.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| COO90_RS26440 (52033) | 52033..52242 | - | 210 | WP_000062603.1 | HEAT repeat domain-containing protein | - |
| COO90_RS26445 (52634) | 52634..52810 | + | 177 | WP_001054898.1 | hypothetical protein | - |
| COO90_RS27490 (52875) | 52875..52970 | - | 96 | WP_001303310.1 | DinQ-like type I toxin DqlB | - |
| COO90_RS26455 (53469) | 53469..53720 | + | 252 | WP_001291964.1 | hypothetical protein | - |
| COO90_RS26460 (53792) | 53792..53944 | - | 153 | WP_001331364.1 | Hok/Gef family protein | Toxin Detail |
| - (53999) | 53999..54056 | + | 58 | NuclAT_0 | - | Antitoxin Detail |
| - (53999) | 53999..54056 | + | 58 | NuclAT_0 | - | Antitoxin Detail |
| - (53999) | 53999..54056 | + | 58 | NuclAT_0 | - | Antitoxin Detail |
| - (53999) | 53999..54056 | + | 58 | NuclAT_0 | - | Antitoxin Detail |
| - (54297) | 54297..54352 | + | 56 | NuclAT_1 | - | - |
| - (54297) | 54297..54352 | + | 56 | NuclAT_1 | - | - |
| - (54297) | 54297..54352 | + | 56 | NuclAT_1 | - | - |
| - (54297) | 54297..54352 | + | 56 | NuclAT_1 | - | - |
| COO90_RS26465 (54546) | 54546..55499 | + | 954 | WP_021513958.1 | hypothetical protein | - |
| COO90_RS26470 (55717) | 55717..56925 | + | 1209 | WP_001383960.1 | IncI1-type conjugal transfer protein TrbA | - |
| COO90_RS26475 (56944) | 56944..58014 | + | 1071 | WP_000151583.1 | IncI1-type conjugal transfer protein TrbB | - |
| COO90_RS26480 (58007) | 58007..60298 | + | 2292 | WP_021520372.1 | F-type conjugative transfer protein TrbC | - |
| COO90_RS26485 (60335) | 60335..63034 | - | 2700 | WP_021520371.1 | Protein TraI | Relaxase |
| COO90_RS26490 (63045) | 63045..63377 | - | 333 | WP_001281051.1 | plasmid mobilization protein MobA | - |
| COO90_RS26495 (63610) | 63610..63945 | + | 336 | WP_000157083.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| COO90_RS26500 (64031) | 64031..64879 | - | 849 | WP_001077034.1 | DUF4942 domain-containing protein | - |
| COO90_RS26505 (65460) | 65460..65711 | + | 252 | WP_000148286.1 | helix-turn-helix transcriptional regulator | - |
| COO90_RS26510 (65742) | 65742..65987 | - | 246 | WP_001260883.1 | hypothetical protein | - |
| COO90_RS26515 (65987) | 65987..66913 | - | 927 | WP_000038335.1 | Recombination-promoting nuclease RpnA | VF |
| COO90_RS26520 (66910) | 66910..67299 | - | 390 | WP_000833767.1 | hypothetical protein | - |
| COO90_RS26525 (67476) | 67476..67742 | - | 267 | WP_001247860.1 | hypothetical protein | - |
| COO90_RS26530 (67835) | 67835..68269 | - | 435 | WP_000218862.1 | hypothetical protein | - |
| COO90_RS26535 (69002) | 69002..69502 | - | 501 | WP_000117631.1 | antirestriction protein ArdA | - |
| COO90_RS26540 (69964) | 69964..70560 | - | 597 | WP_000977995.1 | hypothetical protein | - |
| COO90_RS26545 (70557) | 70557..71276 | - | 720 | WP_001276270.1 | plasmid SOS inhibition protein A | - |
| COO90_RS26550 (71273) | 71273..71707 | - | 435 | WP_000845903.1 | conjugation system SOS inhibitor PsiB | - |
| COO90_RS26555 (71762) | 71762..73720 | - | 1959 | WP_001145476.1 | ParB/RepB/Spo0J family partition protein | - |
| COO90_RS26560 (73779) | 73779..74012 | - | 234 | WP_000006020.1 | DUF905 domain-containing protein | - |
| COO90_RS26565 (74070) | 74070..74597 | - | 528 | WP_001276120.1 | single-stranded DNA-binding protein | - |
| COO90_RS26570 (74950) | 74950..75231 | - | 282 | WP_154671919.1 | hypothetical protein | - |
| COO90_RS26575 (75369) | 75369..75560 | - | 192 | WP_001027516.1 | hypothetical protein | - |
| COO90_RS26580 (75557) | 75557..75979 | - | 423 | WP_000271688.1 | DUF1380 family protein | - |
| COO90_RS26585 (76026) | 76026..76451 | - | 426 | WP_001198900.1 | antirestriction protein | - |
| COO90_RS26590 (76867) | 76867..77637 | - | 771 | WP_001006204.1 | hypothetical protein | - |
| COO90_RS26595 (77682) | 77682..78200 | - | 519 | WP_223168556.1 | DUF1380 family protein | - |
| COO90_RS26600 (78130) | 78130..78351 | - | 222 | WP_001104873.1 | hypothetical protein | - |
| COO90_RS26605 (78352) | 78352..79035 | - | 684 | WP_000086137.1 | DNA methylase | - |
| COO90_RS26610 (79111) | 79111..79422 | - | 312 | WP_031935767.1 | hypothetical protein | - |
| COO90_RS26615 (79419) | 79419..80321 | - | 903 | WP_001330417.1 | DUF1281 domain-containing protein | - |
| COO90_RS26620 (80740) | 80740..80988 | + | 249 | WP_000618110.1 | DinI-like family protein | - |
| COO90_RS26625 (80985) | 80985..81422 | + | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| COO90_RS26630 (81422) | 81422..82696 | + | 1275 | WP_021577243.1 | Y-family DNA polymerase | - |
| COO90_RS26635 (82698) | 82698..83114 | - | 417 | WP_001278818.1 | plasmid partitioning/stability family protein | - |
| COO90_RS26640 (83107) | 83107..84087 | - | 981 | WP_000688514.1 | plasmid segregation protein ParM | - |
| COO90_RS26645 (84501) | 84501..84809 | - | 309 | WP_000030199.1 | hypothetical protein | - |
| COO90_RS26650 (84896) | 84896..85540 | - | 645 | WP_001144036.1 | ParA family protein | - |
| COO90_RS26655 (85720) | 85720..86499 | - | 780 | WP_024227071.1 | site-specific integrase | - |
| COO90_RS26660 (86501) | 86501..86914 | - | 414 | WP_000465036.1 | hypothetical protein | - |
| COO90_RS26665 (87483) | 87483..87740 | + | 258 | WP_000371885.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|