MGE detailed information
MGE type: Prophage MGE length: 42817 bp
Accession: NZ_CP053751 Location: 2321225..2364041 Organism: Shigella sonnei strain 506 Replicon: chromosome
Accession: NZ_CP053751 Location: 2321225..2364041 Organism: Shigella sonnei strain 506 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| COO90_RS11400 () | 2316367..2316606 | - | 240 | WP_000961944.1 | hypothetical protein | - |
| COO90_RS11405 () | 2316728..2317425 | + | 698 | WP_094096600.1 | IS1-like element IS1A family transposase | - |
| COO90_RS11410 () | 2317546..2318388 | + | 843 | WP_000546442.1 | Nif3-like dinuclear metal center hexameric protein | - |
| COO90_RS11415 () | 2318448..2319890 | - | 1443 | WP_000091148.1 | pyruvate kinase | - |
| COO90_RS11420 () | 2320018..2320887 | - | 870 | WP_001056706.1 | DNA-binding transcriptional regulator HexR | - |
| COO90_RS11425 () | 2321225..2322700 | + | 1476 | WP_000301720.1 | glucose-6-phosphate dehydrogenase | - |
| COO90_RS11430 () | 2322935..2324746 | + | 1812 | WP_001069438.1 | phosphogluconate dehydratase | - |
| COO90_RS11435 () | 2324783..2325424 | + | 642 | WP_000800512.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| COO90_RS11440 () | 2325480..2326658 | - | 1179 | WP_000173484.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| COO90_RS11445 () | 2326792..2327082 | + | 291 | WP_000257738.1 | DNA damage-inducible protein YebG | - |
| COO90_RS11450 () | 2327149..2327505 | + | 357 | WP_001295500.1 | protein YebF | - |
| COO90_RS11455 () | 2327832..2328491 | + | 660 | WP_000024745.1 | tellurite resistance TerB family protein | - |
| COO90_RS11460 () | 2328700..2330760 | + | 2061 | WP_000936913.1 | oligopeptidase B | - |
| COO90_RS11465 () | 2330757..2331419 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| COO90_RS11470 () | 2331443..2332099 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| COO90_RS11475 () | 2332201..2332431 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| COO90_RS11480 () | 2332570..2332944 | + | 375 | WP_000168735.1 | CopC domain-containing protein YobA | - |
| COO90_RS11485 () | 2332948..2333820 | + | 873 | WP_000879296.1 | copper homeostasis membrane protein CopD | - |
| COO90_RS11490 () | 2333833..2334174 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 2334202..2334436 | - | 235 | - | - | Antitoxin Detail |
| - | 2334332..2334435 | + | 104 | - | - | Toxin Detail |
| COO90_RS11495 () | 2334567..2335643 | - | 1077 | WP_001189101.1 | hypothetical protein ; Integrase | Integrase |
| COO90_RS11500 () | 2335680..2335925 | - | 246 | Protein_2233 | IS1 family transposase IS1R | Transposase |
| COO90_RS11510 () | 2337306..2338061 | - | 756 | WP_001282649.1 | IS21 family transposase ISSso4 | Transposase |
| COO90_RS11515 () | 2338078..2339613 | - | 1536 | WP_000447022.1 | IS21 family transposase ISSso4 | Transposase |
| COO90_RS11520 () | 2339900..2340357 | - | 458 | Protein_2237 | IS1-like element IS1A family transposase | - |
| COO90_RS11525 () | 2340386..2340646 | - | 261 | WP_077447296.1 | excisionase | - |
| COO90_RS11530 () | 2340791..2341947 | + | 1157 | WP_094096605.1 | IS3 family transposase IS600 | Transposase |
| COO90_RS11535 () | 2342063..2343778 | - | 1716 | WP_011310192.1 | hypothetical protein | VF |
| COO90_RS11545 () | 2345787..2345960 | + | 174 | Protein_2242 | metallophosphoesterase | - |
| COO90_RS11555 () | 2346726..2347031 | + | 306 | Protein_2244 | serine/threonine-protein phosphatase | - |
| COO90_RS11560 () | 2347089..2348245 | + | 1157 | WP_130872889.1 | IS3 family transposase IS600 | Transposase |
| COO90_RS11565 () | 2348287..2348487 | + | 201 | Protein_2246 | serine/threonine-protein phosphatase | - |
| COO90_RS11570 () | 2348488..2348679 | - | 192 | WP_001296140.1 | YebW family protein | - |
| COO90_RS11575 () | 2348784..2348942 | - | 159 | Protein_2248 | DUF1480 family protein | - |
| COO90_RS11580 () | 2349000..2349697 | + | 698 | WP_237158197.1 | IS1-like element IS1A family transposase | - |
| COO90_RS11585 () | 2349714..2349797 | - | 84 | Protein_2250 | DUF1480 family protein | - |
| COO90_RS11590 () | 2349915..2351354 | - | 1440 | WP_005138560.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| COO90_RS11595 () | 2351435..2354068 | - | 2634 | WP_005138565.1 | hypothetical protein | VF |
| COO90_RS11600 () | 2354037..2355320 | - | 1284 | WP_001207284.1 | membrane integrity lipid transport subunit YebS | - |
| COO90_RS11605 () | 2355450..2355947 | + | 498 | WP_001043882.1 | L-methionine (R)-S-oxide reductase | - |
| COO90_RS11610 () | 2356044..2356742 | + | 699 | WP_000431362.1 | RNA chaperone ProQ | - |
| COO90_RS11615 () | 2356762..2358810 | + | 2049 | WP_011310196.1 | carboxy terminal-processing peptidase | - |
| COO90_RS11620 () | 2359002..2359883 | + | 882 | WP_000984517.1 | protease HtpX | - |
| COO90_RS11625 () | 2359929..2360992 | - | 1064 | Protein_2258 | MFS transporter | - |
| COO90_RS11630 () | 2361169..2361960 | + | 792 | WP_001262174.1 | DNA-binding transcriptional regulator KdgR | - |
| COO90_RS11635 () | 2362103..2362342 | - | 240 | WP_001211011.1 | YobH family protein | - |
| COO90_RS11640 () | 2362501..2362644 | + | 144 | WP_000714550.1 | PhoP/PhoQ regulator MgrB | - |
| COO90_RS11645 () | 2362719..2363006 | + | 288 | WP_001006860.1 | YebO family protein | - |
| COO90_RS11650 () | 2363676..2363819 | + | 144 | WP_001295496.1 | DUF2627 domain-containing protein | - |
| COO90_RS11655 () | 2363832..2364041 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| COO90_RS11660 () | 2364207..2365016 | + | 810 | WP_000010143.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| COO90_RS11665 () | 2365013..2365579 | - | 567 | WP_001296134.1 | manganese efflux pump MntP | - |
| COO90_RS11670 () | 2366008..2366466 | - | 459 | WP_000156255.1 | DUF986 family protein | - |
| COO90_RS11675 () | 2366521..2367372 | - | 852 | WP_000228655.1 | PTS mannose transporter subunit IID | - |
| COO90_RS11680 () | 2367385..2368185 | - | 801 | WP_000406926.1 | PTS mannose transporter subunit IIC | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|