Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2334202..2334436 | Replicon | chromosome |
| Accession | NZ_CP053751 | ||
| Organism | Shigella sonnei strain 506 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2334332..2334435 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2334202..2334436 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| COO90_RS11465 | 2330757..2331419 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| COO90_RS11470 | 2331443..2332099 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| COO90_RS11475 | 2332201..2332431 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| COO90_RS11480 | 2332570..2332944 | + | 375 | WP_000168735.1 | CopC domain-containing protein YobA | - |
| COO90_RS11485 | 2332948..2333820 | + | 873 | WP_000879296.1 | copper homeostasis membrane protein CopD | - |
| COO90_RS11490 | 2333833..2334174 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 2334202..2334436 | - | 235 | - | - | Antitoxin |
| - | 2334332..2334435 | + | 104 | - | - | Toxin |
| COO90_RS11495 | 2334567..2335643 | - | 1077 | WP_001189101.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| COO90_RS11500 | 2335680..2335925 | - | 246 | Protein_2233 | IS1 family transposase | - |
| COO90_RS11510 | 2337306..2338061 | - | 756 | WP_001282649.1 | IS21-like element ISSso4 family helper ATPase IstB | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | ipaH9.8 | 2321225..2364041 | 42816 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T157715 NZ_CP053751:2334332-2334435 [Shigella sonnei]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 235 bp
>AT157715 NZ_CP053751:c2334436-2334202 [Shigella sonnei]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
