MGE detailed information
MGE type: Prophage MGE length: 72774 bp
Accession: NZ_CP053731 Location: 1..72774 Organism: Escherichia coli strain CP55_Sichuan Replicon: chromosome
Accession: NZ_CP053731 Location: 1..72774 Organism: Escherichia coli strain CP55_Sichuan Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HP431_RS00010 () | 1..1662 | + | 1662 | WP_001537086.1 | terminase large subunit | - |
| HP431_RS00015 () | 1726..3663 | + | 1938 | WP_105907392.1 | phage major capsid protein | - |
| HP431_RS00020 () | 3708..3929 | + | 222 | WP_001063099.1 | hypothetical protein | - |
| HP431_RS00025 () | 3875..6297 | + | 2423 | Protein_4 | phage portal protein | - |
| HP431_RS00030 () | 6294..6620 | + | 327 | WP_000126002.1 | head-tail connector protein | - |
| HP431_RS00035 () | 6630..6980 | + | 351 | WP_001537078.1 | phage head closure protein | - |
| HP431_RS00040 () | 6977..7423 | + | 447 | WP_000573391.1 | HK97 gp10 family phage protein | - |
| HP431_RS00045 () | 7420..7764 | + | 345 | WP_000133388.1 | DUF3168 domain-containing protein | - |
| HP431_RS00050 () | 7831..8547 | + | 717 | WP_001537075.1 | hypothetical protein | - |
| HP431_RS00055 () | 8553..8927 | + | 375 | WP_001030063.1 | phage tail assembly chaperone | - |
| HP431_RS00060 () | 9023..9232 | + | 210 | WP_001513217.1 | DUF4035 domain-containing protein | - |
| HP431_RS00065 () | 9280..12522 | + | 3243 | WP_113440875.1 | phage tail tape measure protein | - |
| HP431_RS00070 () | 12515..12856 | + | 342 | WP_001672459.1 | phage tail protein | - |
| HP431_RS00075 () | 13063..14226 | + | 1164 | WP_062864471.1 | Outer membrane porin protein OmpD | VF |
| HP431_RS00080 () | 14423..15121 | + | 699 | WP_001537069.1 | phage minor tail protein L | - |
| HP431_RS00085 () | 15178..15714 | - | 537 | WP_001537068.1 | ATP-dependent Clp protease proteolytic subunit | - |
| HP431_RS00090 () | 15714..15962 | - | 249 | WP_000675426.1 | Arc family DNA-binding protein | - |
| HP431_RS00095 () | 16073..16213 | + | 141 | WP_000868195.1 | Arc family DNA-binding protein | - |
| HP431_RS00100 () | 16276..17190 | + | 915 | WP_172615469.1 | phage repressor protein/antirepressor Ant | - |
| HP431_RS00105 () | 17245..17982 | + | 738 | WP_001537065.1 | C40 family peptidase | - |
| HP431_RS00110 () | 17928..18560 | + | 633 | WP_122990144.1 | tail assembly protein | - |
| HP431_RS00115 () | 18814..22287 | + | 3474 | WP_172615559.1 | host specificity protein J | - |
| HP431_RS00120 () | 22355..22954 | + | 600 | WP_032217644.1 | Attachment invasion locus protein | VF |
| HP431_RS00125 () | 23106..24527 | + | 1422 | WP_033804532.1 | prophage tail fiber N-terminal domain-containing protein | - |
| HP431_RS00130 () | 24877..25548 | + | 672 | WP_001537058.1 | DUF4376 domain-containing protein | - |
| HP431_RS00135 () | 25912..27378 | + | 1467 | WP_062903568.1 | Adhesin YadA | VF |
| HP431_RS00140 () | 27465..27938 | + | 474 | WP_001537055.1 | hypothetical protein | - |
| HP431_RS00145 () | 28150..28398 | - | 249 | WP_001217531.1 | DinI-like family protein | - |
| HP431_RS00150 () | 28725..29291 | - | 567 | WP_000891610.1 | hydrolase | - |
| HP431_RS00155 () | 29601..31373 | + | 1773 | WP_001258662.1 | aspartate--tRNA ligase | - |
| HP431_RS00160 () | 31366..31818 | + | 453 | WP_077221229.1 | dihydroneopterin triphosphate diphosphatase | - |
| HP431_RS00165 () | 31847..32587 | + | 741 | WP_000907234.1 | putative transcriptional regulatory protein YebC | VF |
| HP431_RS00170 () | 32622..33143 | + | 522 | WP_001295503.1 | crossover junction endodeoxyribonuclease RuvC | - |
| HP431_RS00175 () | 33145..33747 | - | 603 | WP_001024930.1 | YebB family permuted papain-like enzyme | - |
| HP431_RS00180 () | 33818..33883 | + | 66 | WP_001386853.1 | stress response small protein YobI | - |
| HP431_RS00185 () | 34022..34633 | + | 612 | WP_000580323.1 | Holliday junction branch migration protein RuvA | - |
| HP431_RS00190 () | 34642..35652 | + | 1011 | WP_000568519.1 | Holliday junction branch migration DNA helicase RuvB | - |
| HP431_RS00195 () | 35799..36584 | - | 786 | WP_000571465.1 | High-affinity zinc uptake system membrane protein ZnuB | VF |
| HP431_RS00200 () | 36581..37336 | - | 756 | WP_000202996.1 | Zinc import ATP-binding protein ZnuC | VF |
| HP431_RS00205 () | 37415..38347 | + | 933 | WP_001342995.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| HP431_RS00210 () | 38363..39685 | + | 1323 | WP_001184045.1 | murein DD-endopeptidase MepM | - |
| HP431_RS00215 () | 39805..40776 | + | 972 | WP_000448381.1 | Lipid A biosynthesis myristoyltransferase | VF |
| HP431_RS00220 () | 40907..42349 | - | 1443 | WP_000091148.1 | pyruvate kinase | - |
| HP431_RS00225 () | 42477..43346 | - | 870 | WP_001056706.1 | DNA-binding transcriptional regulator HexR | - |
| HP431_RS00230 () | 43684..45159 | + | 1476 | WP_000301727.1 | glucose-6-phosphate dehydrogenase | - |
| HP431_RS00235 () | 45394..47205 | + | 1812 | WP_001069467.1 | phosphogluconate dehydratase | - |
| HP431_RS00240 () | 47242..47883 | + | 642 | WP_089648868.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| HP431_RS00245 () | 47939..49117 | - | 1179 | WP_000173474.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| HP431_RS00250 () | 49251..49541 | + | 291 | WP_000257738.1 | DNA damage-inducible protein YebG | - |
| HP431_RS00255 () | 49608..49964 | + | 357 | WP_001295500.1 | protein YebF | - |
| HP431_RS00260 () | 50291..50950 | + | 660 | WP_000024745.1 | tellurite resistance TerB family protein | - |
| HP431_RS00265 () | 51159..53219 | + | 2061 | WP_000936936.1 | oligopeptidase B | - |
| HP431_RS00270 () | 53216..53878 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HP431_RS00275 () | 53902..54558 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| HP431_RS00280 () | 54660..54890 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HP431_RS00285 () | 55029..55403 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| HP431_RS00290 () | 55407..56279 | + | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| HP431_RS00295 () | 56292..56636 | + | 345 | WP_113440764.1 | YebY family protein | - |
| - () | 56664..56935 | - | 272 | - | - | Antitoxin Detail |
| - () | 56794..56897 | + | 104 | - | - | Toxin Detail |
| HP431_RS00300 () | 57032..57688 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| HP431_RS00305 () | 57689..57880 | - | 192 | WP_001296140.1 | YebW family protein | - |
| HP431_RS00310 () | 57985..58221 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HP431_RS00315 () | 58339..59778 | - | 1440 | WP_113440766.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HP431_RS00320 () | 59858..62491 | - | 2634 | WP_001297532.1 | hypothetical protein | VF |
| HP431_RS00325 () | 62460..63743 | - | 1284 | WP_001207283.1 | membrane integrity lipid transport subunit YebS | - |
| HP431_RS00330 () | 63873..64370 | + | 498 | WP_001043882.1 | L-methionine (R)-S-oxide reductase | - |
| HP431_RS00335 () | 64467..65165 | + | 699 | WP_000431370.1 | RNA chaperone ProQ | - |
| HP431_RS00340 () | 65185..67233 | + | 2049 | WP_001315679.1 | carboxy terminal-processing peptidase | - |
| HP431_RS00345 () | 67425..68306 | + | 882 | WP_000984517.1 | protease HtpX | - |
| HP431_RS00350 () | 68352..69725 | - | 1374 | WP_001315678.1 | MFS transporter | - |
| HP431_RS00355 () | 69902..70693 | + | 792 | WP_001262174.1 | DNA-binding transcriptional regulator KdgR | - |
| HP431_RS00360 () | 70836..71075 | - | 240 | WP_001211011.1 | hypothetical protein | - |
| HP431_RS00365 () | 71234..71377 | + | 144 | WP_000714550.1 | PhoP/PhoQ regulator MgrB | - |
| HP431_RS00370 () | 71452..71739 | + | 288 | WP_001006861.1 | YebO family protein | - |
| HP431_RS00375 () | 72409..72552 | + | 144 | WP_001295496.1 | YobF family protein | - |
| HP431_RS00380 () | 72565..72774 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| HP431_RS00385 () | 72940..73749 | + | 810 | WP_000010129.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| HP431_RS00390 () | 73746..74312 | - | 567 | WP_162755664.1 | manganese efflux pump MntP | - |
| HP431_RS00395 () | 74741..75199 | - | 459 | WP_000156255.1 | DUF986 family protein | - |
| HP431_RS00400 () | 75254..76105 | - | 852 | WP_000228655.1 | PTS mannose transporter subunit IID | - |
| HP431_RS00405 () | 76118..76918 | - | 801 | WP_000406926.1 | PTS mannose transporter subunit IIC | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|