Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 56664..56935 | Replicon | chromosome |
| Accession | NZ_CP053731 | ||
| Organism | Escherichia coli strain CP55_Sichuan | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 56794..56897 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 56664..56935 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HP431_RS00270 | 53216..53878 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HP431_RS00275 | 53902..54558 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| HP431_RS00280 | 54660..54890 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HP431_RS00285 | 55029..55403 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| HP431_RS00290 | 55407..56279 | + | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| HP431_RS00295 | 56292..56636 | + | 345 | WP_113440764.1 | YebY family protein | - |
| - | 56664..56935 | - | 272 | - | - | Antitoxin |
| - | 56794..56897 | + | 104 | - | - | Toxin |
| HP431_RS00300 | 57032..57688 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| HP431_RS00305 | 57689..57880 | - | 192 | WP_001296140.1 | YebW family protein | - |
| HP431_RS00310 | 57985..58221 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HP431_RS00315 | 58339..59778 | - | 1440 | WP_113440766.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1..72774 | 72773 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T157615 NZ_CP053731:56794-56897 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT157615 NZ_CP053731:c56935-56664 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
