MGE detailed information
MGE type: Conjugative plasmid MGE length: 49405 bp
Accession: NZ_CP053554 Location: 1..49405 Organism: Diaphorobacter sp. JS3050 Replicon: plasmid pDCNB
Accession: NZ_CP053554 Location: 1..49405 Organism: Diaphorobacter sp. JS3050 Replicon: plasmid pDCNB
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HND92_RS18880 () | 308..1006 | - | 699 | WP_012478194.1 | conjugal transfer protein TraX | - |
| HND92_RS18885 () | 1003..1272 | - | 270 | WP_011255140.1 | hypothetical protein | - |
| HND92_RS18890 () | 1302..1937 | - | 636 | WP_011255139.1 | transglycosylase SLT domain-containing protein | - |
| HND92_RS18895 () | 1939..2517 | - | 579 | WP_011255138.1 | conjugal transfer protein TrbM | - |
| HND92_RS18900 () | 2536..4254 | - | 1719 | WP_012478193.1 | P-type conjugative transfer protein TrbL | - |
| HND92_RS18905 () | 4266..4487 | - | 222 | WP_011255136.1 | entry exclusion lipoprotein TrbK | - |
| HND92_RS18910 () | 4497..5270 | - | 774 | WP_011255135.1 | P-type conjugative transfer protein TrbJ | - |
| HND92_RS18915 () | 5287..6666 | - | 1380 | WP_012478192.1 | TrbI/VirB10 family protein | - |
| HND92_RS18920 () | 6670..7131 | - | 462 | WP_011013267.1 | conjugal transfer protein TrbH | - |
| HND92_RS18925 () | 7134..8027 | - | 894 | WP_014386236.1 | P-type conjugative transfer protein TrbG | - |
| HND92_RS18930 () | 8045..8833 | - | 789 | WP_011013265.1 | conjugal transfer protein TrbF | - |
| HND92_RS18935 () | 8830..9348 | - | 519 | Protein_12 | conjugal transfer protein TrbE | - |
| HND92_RS18940 () | 9421..10509 | + | 1089 | WP_011803559.1 | IS5 family transposase | - |
| HND92_RS18945 () | 10659..12713 | - | 2055 | Protein_14 | conjugal transfer protein TrbE | - |
| HND92_RS18950 () | 12710..13021 | - | 312 | WP_011013263.1 | conjugal transfer protein TrbD | - |
| HND92_RS18955 () | 13025..13489 | - | 465 | WP_011013262.1 | conjugal transfer system pilin TrbC | - |
| HND92_RS18960 () | 13519..14484 | - | 966 | WP_011013261.1 | P-type conjugative transfer ATPase TrbB | - |
| HND92_RS18965 () | 14799..15158 | - | 360 | WP_011013260.1 | transcriptional regulator | - |
| HND92_RS18970 () | 15268..15606 | + | 339 | WP_011013259.1 | single-stranded DNA-binding protein | - |
| HND92_RS18975 () | 15655..16878 | + | 1224 | WP_011013257.1 | replication initiator protein A | - |
| HND92_RS18980 () | 18264..18545 | - | 282 | WP_011114071.1 | type II toxin-antitoxin system YafQ family toxin | Toxin Detail |
| HND92_RS18985 () | 18532..18795 | - | 264 | WP_011114070.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| HND92_RS18990 () | 18968..19396 | + | 429 | WP_011114069.1 | antirestriction protein | - |
| HND92_RS18995 () | 19396..19659 | + | 264 | WP_011296181.1 | hypothetical protein | - |
| HND92_RS19000 () | 19671..20879 | + | 1209 | WP_012478186.1 | hypothetical protein | - |
| HND92_RS19005 () | 20896..21153 | + | 258 | WP_012478185.1 | hypothetical protein | - |
| HND92_RS19010 () | 21311..21547 | + | 237 | WP_011255200.1 | stable inheritance protein KleA | - |
| HND92_RS19015 () | 21757..22083 | + | 327 | WP_012478184.1 | hypothetical protein | - |
| HND92_RS19020 () | 22085..22372 | + | 288 | Protein_29 | DUF2761 domain-containing protein | - |
| HND92_RS19025 () | 22616..22924 | + | 309 | WP_011255197.1 | transcriptional regulator | - |
| HND92_RS19030 () | 22921..23685 | + | 765 | WP_013397098.1 | ParA family protein | - |
| HND92_RS19035 () | 23682..24740 | + | 1059 | WP_012478180.1 | ParB/RepB/Spo0J family partition protein | - |
| HND92_RS19040 () | 24940..25962 | + | 1023 | WP_012478179.1 | DNA-binding protein | - |
| HND92_RS19045 () | 26136..26483 | + | 348 | WP_011255193.1 | hypothetical protein | - |
| HND92_RS19050 () | 26513..27148 | + | 636 | WP_012478178.1 | hypothetical protein | - |
| HND92_RS19055 () | 27342..27782 | - | 441 | WP_012478177.1 | conjugal transfer protein TraM | - |
| HND92_RS19060 () | 27782..28507 | - | 726 | WP_012478176.1 | conjugal transfer protein TraL | - |
| HND92_RS19065 () | 28507..28926 | - | 420 | WP_012478175.1 | TraK family protein | - |
| HND92_RS19070 () | 29290..29511 | + | 222 | WP_011798730.1 | hypothetical protein | - |
| HND92_RS19075 () | 29516..29887 | + | 372 | WP_011255188.1 | conjugal transfer transcriptional regulator TraJ | - |
| HND92_RS19080 () | 29922..32180 | + | 2259 | WP_012478238.1 | relaxase/mobilization nuclease domain-containing protein | - |
| HND92_RS19085 () | 32177..34081 | + | 1905 | WP_012478237.1 | type IV secretory system conjugative DNA transfer family protein | - |
| HND92_RS19090 () | 34078..34614 | + | 537 | WP_012478236.1 | conjugative transfer signal peptidase TraF | - |
| HND92_RS19095 () | 34629..36689 | + | 2061 | WP_011255183.1 | DNA topoisomerase III | - |
| HND92_RS19100 () | 36714..37106 | + | 393 | WP_012478235.1 | hypothetical protein | - |
| HND92_RS19105 () | 37110..41846 | + | 4737 | WP_012478234.1 | DUF1738 domain-containing protein | - |
| HND92_RS19110 () | 42237..45152 | + | 2916 | WP_003049965.1 | Tn3-like element IS1071 family transposase | - |
| HND92_RS19115 () | 45284..45427 | - | 144 | Protein_48 | chloromuconate cycloisomerase | - |
| HND92_RS19120 () | 45424..46179 | - | 756 | WP_172209404.1 | chlorocatechol 1,2-dioxygenase | - |
| HND92_RS19125 () | 46329..47213 | + | 885 | WP_172209406.1 | LysR family transcriptional regulator | - |
| HND92_RS19130 () | 47415..48224 | - | 810 | WP_172209408.1 | AraC family transcriptional regulator | - |
| HND92_RS19135 () | 48244..48519 | + | 276 | Protein_52 | Tn3 family transposase | - |
| HND92_RS19140 () | 48735..49151 | - | 417 | WP_012478195.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|