MGE detailed information
MGE type: Genomic_island MGE length: 75012 bp
Accession: NZ_CP053346 Location: 2540901..2615912 Organism: Sphingomonas sp. AP4-R1 Replicon: chromosome
Accession: NZ_CP053346 Location: 2540901..2615912 Organism: Sphingomonas sp. AP4-R1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HL653_RS11800 () | 2536600..2537898 | + | 1299 | WP_171744684.1 | glycerate kinase | - |
| HL653_RS11805 () | 2537895..2538155 | + | 261 | WP_171742670.1 | hypothetical protein | - |
| HL653_RS11810 () | 2538237..2538581 | + | 345 | WP_171744685.1 | hypothetical protein | - |
| HL653_RS11815 () | 2538673..2539131 | + | 459 | WP_171744686.1 | DUF3489 domain-containing protein | - |
| HL653_RS11820 () | 2539519..2539671 | + | 153 | WP_171744687.1 | AAA family ATPase | - |
| HL653_RS11825 () | 2539717..2540763 | + | 1047 | WP_171744688.1 | AAA family ATPase | - |
| HL653_RS11830 () | 2540901..2541740 | + | 840 | WP_171744689.1 | hypothetical protein | - |
| HL653_RS11835 () | 2542008..2543005 | - | 998 | Protein_2337 | IS110 family transposase ISMno14 | Transposase |
| HL653_RS11840 () | 2543647..2544606 | + | 960 | WP_171744690.1 | hypothetical protein | - |
| HL653_RS11845 () | 2544593..2544841 | + | 249 | WP_171744691.1 | hypothetical protein | - |
| HL653_RS11850 () | 2544828..2546624 | + | 1797 | WP_171744692.1 | DUF2326 domain-containing protein | - |
| HL653_RS11855 () | 2546656..2547750 | - | 1095 | WP_171744693.1 | hypothetical protein | - |
| HL653_RS11860 () | 2547945..2548712 | - | 768 | WP_171744694.1 | hypothetical protein | - |
| HL653_RS11865 () | 2548783..2549535 | - | 753 | WP_171744695.1 | hypothetical protein | - |
| HL653_RS11870 () | 2550140..2550580 | + | 441 | WP_171744696.1 | DUF1810 domain-containing protein | - |
| HL653_RS11875 () | 2550584..2552290 | + | 1707 | WP_171744697.1 | DUF2971 domain-containing protein | - |
| HL653_RS11880 () | 2552360..2553898 | + | 1539 | WP_171744698.1 | hypothetical protein | - |
| HL653_RS11885 () | 2553991..2554974 | + | 984 | WP_171744699.1 | hypothetical protein | - |
| HL653_RS11890 () | 2554984..2555424 | + | 441 | WP_171744700.1 | hypothetical protein | - |
| HL653_RS11895 () | 2555771..2556619 | + | 849 | WP_171744701.1 | hypothetical protein | - |
| HL653_RS11900 () | 2556703..2558106 | + | 1404 | WP_171744702.1 | hypothetical protein | - |
| HL653_RS11905 () | 2558694..2559353 | - | 660 | WP_171744703.1 | 4'-phosphopantetheinyl transferase superfamily protein | - |
| HL653_RS11910 () | 2559350..2563384 | - | 4035 | WP_171744704.1 | Tyrocidine synthase 3 | VF |
| HL653_RS11915 () | 2563470..2564186 | - | 717 | WP_171744705.1 | Protein MgtC | VF |
| HL653_RS11920 () | 2564277..2565635 | - | 1359 | WP_171744706.1 | magnesium transporter | - |
| HL653_RS11925 () | 2566060..2566917 | + | 858 | WP_171744707.1 | META domain-containing protein | - |
| HL653_RS11930 () | 2567561..2568511 | - | 951 | WP_171746928.1 | SMP-30/gluconolactonase/LRE family protein | - |
| HL653_RS11935 () | 2568532..2570739 | - | 2208 | WP_171744708.1 | xanthine dehydrogenase family protein molybdopterin-binding subunit | - |
| HL653_RS11940 () | 2570736..2571350 | - | 615 | WP_171746929.1 | cysteine hydrolase | - |
| HL653_RS11945 () | 2571404..2573638 | - | 2235 | WP_171744709.1 | xanthine dehydrogenase family protein molybdopterin-binding subunit | - |
| HL653_RS11950 () | 2573643..2574593 | - | 951 | WP_171744710.1 | xanthine dehydrogenase family protein subunit M | - |
| HL653_RS11955 () | 2574590..2575228 | - | 639 | WP_171746930.1 | aldehyde dehydrogenase iron-sulfur subunit | - |
| HL653_RS11960 () | 2575338..2576264 | - | 927 | WP_171744711.1 | XdhC family protein | - |
| HL653_RS11965 () | 2576341..2577567 | - | 1227 | WP_171744712.1 | MFS transporter | - |
| HL653_RS11970 () | 2577745..2578464 | - | 720 | WP_171744713.1 | RibD family protein | - |
| HL653_RS11975 () | 2578639..2579424 | + | 786 | WP_171744714.1 | 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase | VF |
| HL653_RS11980 () | 2579511..2580818 | + | 1308 | WP_171744715.1 | PQQ-dependent sugar dehydrogenase | - |
| HL653_RS11985 () | 2581188..2581922 | - | 735 | WP_171744716.1 | hypothetical protein | - |
| HL653_RS11990 () | 2581938..2583035 | - | 1098 | WP_171744717.1 | hypothetical protein | - |
| HL653_RS11995 () | 2583035..2585311 | - | 2277 | WP_171744718.1 | Signal transduction histidine-protein kinase AtoS | VF |
| HL653_RS12000 () | 2585313..2586662 | - | 1350 | WP_171744719.1 | class I SAM-dependent methyltransferase | - |
| HL653_RS12005 () | 2586889..2587482 | - | 594 | WP_171744720.1 | Tn3 family transposase ISPsy42 | Transposase |
| HL653_RS12010 () | 2587933..2588514 | + | 582 | WP_171744721.1 | RNA polymerase sigma factor | - |
| HL653_RS12015 () | 2588622..2588903 | + | 282 | WP_171744722.1 | hypothetical protein | - |
| HL653_RS12020 () | 2589258..2589368 | + | 111 | Protein_2374 | IS91 family transposase ISMno24 | Transposase |
| HL653_RS12025 () | 2589492..2589866 | + | 375 | WP_171744723.1 | IS66 family transposase ISAli15 | Transposase |
| HL653_RS12030 () | 2589863..2590210 | + | 348 | WP_171744724.1 | IS66 family transposase ISAzs18 | Transposase |
| HL653_RS12035 () | 2590253..2591816 | + | 1564 | Protein_2377 | IS66 family transposase | - |
| HL653_RS12040 () | 2591813..2592415 | + | 603 | WP_171744725.1 | plasmid pRiA4b ORF-3 family protein | - |
| HL653_RS12045 () | 2592803..2593420 | - | 618 | Protein_2379 | RNA helicase | - |
| HL653_RS12050 () | 2593755..2595884 | + | 2130 | WP_171744726.1 | Sensor kinase CckA | VF |
| HL653_RS12055 () | 2596221..2596910 | - | 690 | WP_171744727.1 | CDP-alcohol phosphatidyltransferase family protein | - |
| HL653_RS12060 () | 2597104..2597646 | + | 543 | WP_171746931.1 | GFA family protein | - |
| HL653_RS12065 () | 2597677..2598513 | + | 837 | WP_171744728.1 | DMT family transporter | - |
| HL653_RS12070 () | 2598601..2599050 | - | 450 | WP_171744729.1 | NUDIX hydrolase | - |
| HL653_RS12075 () | 2599178..2599876 | + | 699 | WP_171746932.1 | Protein SapB | VF |
| HL653_RS12080 () | 2600080..2601190 | - | 1111 | Protein_2386 | IS3 family transposase | - |
| HL653_RS12085 () | 2602157..2602516 | + | 360 | WP_171744730.1 | Exoenzyme S synthesis regulatory protein ExsA | VF |
| HL653_RS12090 () | 2602534..2602908 | - | 375 | Protein_2388 | hypothetical protein | - |
| HL653_RS12095 () | 2603160..2603435 | - | 276 | WP_171744731.1 | HU family DNA-binding protein | - |
| HL653_RS12100 () | 2603479..2604393 | - | 915 | WP_171744732.1 | HEPN domain-containing protein | - |
| HL653_RS12105 () | 2604390..2604809 | - | 420 | WP_171744733.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| HL653_RS12110 () | 2604806..2605060 | - | 255 | WP_171744734.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| HL653_RS12115 () | 2605530..2605787 | + | 258 | WP_171744735.1 | type II toxin-antitoxin system prevent-host-death family antitoxin | - |
| HL653_RS12120 () | 2605784..2606167 | + | 384 | WP_171744736.1 | type II toxin-antitoxin system VapC family toxin | - |
| HL653_RS12125 () | 2606272..2606766 | + | 495 | WP_171744737.1 | hypothetical protein | - |
| HL653_RS12130 () | 2606753..2610520 | - | 3768 | WP_171744738.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| HL653_RS12135 () | 2610533..2611957 | - | 1425 | WP_171744739.1 | conjugal transfer protein TraH | - |
| HL653_RS12140 () | 2612011..2612586 | - | 576 | WP_171746933.1 | hypothetical protein | - |
| HL653_RS12145 () | 2612586..2613458 | - | 873 | WP_171746934.1 | conjugal transfer protein TraF | - |
| HL653_RS12150 () | 2613549..2613851 | + | 303 | WP_171744740.1 | DUF1778 domain-containing protein | - |
| HL653_RS12155 () | 2613873..2614388 | + | 516 | WP_171744741.1 | GNAT family N-acetyltransferase | - |
| HL653_RS12160 () | 2614478..2615083 | - | 606 | WP_171744742.1 | S26 family signal peptidase | - |
| HL653_RS12165 () | 2615055..2615912 | - | 858 | WP_171744743.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| HL653_RS12170 () | 2615884..2617008 | - | 1125 | WP_171744744.1 | conjugal transfer protein TraN | - |
| HL653_RS12175 () | 2617005..2618861 | - | 1857 | WP_171746935.1 | hypothetical protein | - |
| HL653_RS12180 () | 2619113..2620129 | - | 1017 | WP_171744745.1 | TraU family protein | - |
| HL653_RS12185 () | 2620126..2620818 | - | 693 | WP_171744746.1 | conjugal transfer protein TraW | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|