MGE detailed information
MGE type: Genomic_island MGE length: 31407 bp
Accession: NZ_CP053245 Location: 2870166..2901572 Organism: Escherichia coli strain SCU-485 Replicon: chromosome
Accession: NZ_CP053245 Location: 2870166..2901572 Organism: Escherichia coli strain SCU-485 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HHJ54_RS13325 () | 2866212..2866637 | - | 426 | WP_001189667.1 | type VI secretion system baseplate subunit TssE | - |
| HHJ54_RS13330 () | 2866642..2868126 | - | 1485 | WP_000111582.1 | type VI secretion system contractile sheath large subunit | - |
| HHJ54_RS13335 () | 2868149..2868652 | - | 504 | WP_000041480.1 | type VI secretion system contractile sheath small subunit | - |
| HHJ54_RS13340 () | 2869367..2869884 | + | 518 | Protein_2587 | Hcp family type VI secretion system effector | - |
| HHJ54_RS13345 () | 2870104..2872051 | + | 1948 | Protein_2588 | type VI secretion system tip protein VgrG | - |
| HHJ54_RS13350 () | 2872051..2872866 | + | 816 | WP_001580448.1 | DUF4123 domain-containing protein | - |
| HHJ54_RS13355 () | 2872881..2874501 | + | 1621 | Protein_2590 | hypothetical protein | - |
| HHJ54_RS13360 () | 2875454..2875736 | + | 283 | Protein_2591 | type VI secretion system PAAR protein | - |
| HHJ54_RS13365 () | 2875755..2876247 | + | 493 | Protein_2592 | Actin cross-linking toxin VgrG1 | VF |
| HHJ54_RS13370 () | 2876259..2876409 | - | 151 | Protein_2593 | IS3 family transposase | - |
| HHJ54_RS13375 () | 2876583..2877705 | + | 1123 | Protein_2594 | ISAs1 family transposase | - |
| HHJ54_RS13380 () | 2877745..2879358 | + | 1614 | WP_170969214.1 | hypothetical protein | - |
| HHJ54_RS13385 () | 2879414..2880255 | + | 842 | Protein_2596 | hypothetical protein | - |
| HHJ54_RS13390 () | 2880751..2881037 | + | 287 | Protein_2597 | type VI secretion system PAAR protein | - |
| HHJ54_RS13395 () | 2881056..2881598 | + | 543 | WP_170969215.1 | Actin cross-linking toxin VgrG1 | VF |
| HHJ54_RS13400 () | 2881535..2881993 | + | 459 | WP_170969216.1 | hypothetical protein | - |
| HHJ54_RS13405 () | 2882145..2883033 | + | 889 | Protein_2600 | Actin cross-linking toxin VgrG1 | VF |
| HHJ54_RS13410 () | 2883140..2884186 | + | 1047 | Protein_2601 | DUF2169 domain-containing protein | - |
| HHJ54_RS13415 () | 2884358..2885119 | + | 762 | Protein_2602 | hypothetical protein | - |
| HHJ54_RS13420 () | 2885116..2885621 | + | 506 | Protein_2603 | hypothetical protein | - |
| HHJ54_RS13425 () | 2886171..2886924 | + | 754 | Protein_2604 | ISAs1 family transposase | - |
| HHJ54_RS13430 () | 2887152..2887656 | + | 505 | Protein_2605 | hypothetical protein | - |
| HHJ54_RS13435 () | 2887751..2888259 | + | 509 | Protein_2606 | integrating conjugative element protein | - |
| HHJ54_RS13440 () | 2888285..2888479 | + | 195 | Protein_2607 | transposase | - |
| HHJ54_RS13445 () | 2888530..2889300 | - | 771 | WP_001118054.1 | 2-oxoglutaramate amidase | - |
| HHJ54_RS13450 () | 2889454..2889927 | + | 474 | WP_000532690.1 | Ivy family C-type lysozyme inhibitor | - |
| HHJ54_RS13455 () | 2889970..2892414 | - | 2445 | WP_170969217.1 | Acyl-coenzyme A dehydrogenase | VF |
| HHJ54_RS13460 () | 2892654..2893232 | + | 579 | WP_000284050.1 | Phosphoheptose isomerase | VF |
| HHJ54_RS13465 () | 2893437..2894204 | + | 768 | WP_001298195.1 | class II glutamine amidotransferase | - |
| HHJ54_RS13470 () | 2894175..2894915 | - | 741 | WP_001225679.1 | murein L,D-transpeptidase | - |
| HHJ54_RS13475 () | 2895227..2895976 | + | 750 | WP_000093934.1 | Murein DD-endopeptidase MepH | VF |
| HHJ54_RS13480 () | 2896152..2896649 | + | 498 | WP_000006241.1 | REP-associated tyrosine transposase RayT | - |
| HHJ54_RS13485 () | 2896769..2898508 | - | 1740 | WP_001337446.1 | Flagellar biosynthesis protein FlhA | VF |
| HHJ54_RS13490 () | 2898453..2899238 | + | 786 | WP_000207543.1 | Chemotaxis protein LafU | VF |
| HHJ54_RS13495 () | 2899309..2900364 | + | 1056 | WP_001226162.1 | DNA polymerase IV | - |
| HHJ54_RS13500 () | 2900416..2900709 | + | 294 | WP_000554758.1 | type I toxin-antitoxin system antitoxin YafN | Antitoxin Detail |
| HHJ54_RS13505 () | 2900712..2901110 | + | 399 | WP_001263500.1 | type II toxin-antitoxin system mRNA interferase toxin YafO | Toxin Detail |
| HHJ54_RS13510 () | 2901120..2901572 | + | 453 | WP_001059897.1 | GNAT family N-acetyltransferase | - |
| HHJ54_RS13515 () | 2901750..2902901 | + | 1152 | WP_023145556.1 | RNA ligase RtcB family protein | - |
| HHJ54_RS13520 () | 2902898..2903512 | + | 615 | WP_000602123.1 | peptide chain release factor H | - |
| HHJ54_RS13525 () | 2903569..2905026 | - | 1458 | WP_001292999.1 | cytosol nonspecific dipeptidase | - |
| HHJ54_RS13530 () | 2905287..2905745 | + | 459 | WP_001291991.1 | xanthine phosphoribosyltransferase | - |
| - () | 2906341..2906421 | + | 81 | NuclAT_4 | - | - |
| - () | 2906341..2906421 | + | 81 | NuclAT_4 | - | - |
| - () | 2906341..2906421 | + | 81 | NuclAT_4 | - | - |
| - () | 2906341..2906421 | + | 81 | NuclAT_4 | - | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|