MGE detailed information
MGE type: Genomic_island MGE length: 9351 bp
Accession: NZ_CP053234 Location: 2233750..2243100 Organism: Escherichia coli strain SCU-106 Replicon: chromosome
Accession: NZ_CP053234 Location: 2233750..2243100 Organism: Escherichia coli strain SCU-106 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HHJ24_RS10985 () | 2228834..2229325 | + | 492 | WP_000976864.1 | hypothetical protein | - |
| HHJ24_RS10990 () | 2229337..2229534 | + | 198 | WP_032209866.1 | DUF957 domain-containing protein | - |
| HHJ24_RS10995 () | 2229619..2230170 | + | 552 | WP_001274563.1 | DUF4942 domain-containing protein | - |
| HHJ24_RS11000 () | 2230252..2230677 | + | 426 | WP_000422722.1 | IS66 family insertion sequence hypothetical protein | - |
| HHJ24_RS11005 () | 2230674..2231024 | + | 351 | WP_000624684.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| HHJ24_RS11010 () | 2231055..2232668 | + | 1614 | WP_170969401.1 | IS66 family transposase | - |
| HHJ24_RS11015 () | 2232687..2233001 | + | 315 | Protein_2156 | DUF4942 domain-containing protein | - |
| HHJ24_RS11020 () | 2233750..2235288 | + | 1539 | WP_001187183.1 | lysine decarboxylation/transport transcriptional activator CadC | - |
| HHJ24_RS11025 () | 2235653..2236987 | + | 1335 | WP_000092909.1 | cadaverine/lysine antiporter | - |
| HHJ24_RS11030 () | 2237067..2239214 | + | 2148 | WP_001295383.1 | lysine decarboxylase CadA | - |
| HHJ24_RS11035 () | 2239273..2240730 | + | 1458 | WP_000856832.1 | dipeptide/tripeptide permease DtpC | - |
| HHJ24_RS11040 () | 2240967..2242484 | + | 1518 | WP_001295074.1 | lysine--tRNA ligase | - |
| HHJ24_RS11045 () | 2242603..2242776 | - | 174 | WP_001173343.1 | type V toxin-antitoxin system toxin GhoT | Toxin Detail |
| HHJ24_RS11050 () | 2242804..2243100 | - | 297 | WP_000398619.1 | type V toxin-antitoxin system endoribonuclease antitoxin GhoS | Antitoxin Detail |
| HHJ24_RS11055 () | 2243327..2243599 | - | 273 | WP_000405647.1 | N-acetyltransferase | - |
| HHJ24_RS11060 () | 2243611..2243841 | - | 231 | WP_000371700.1 | (4Fe-4S)-binding protein | - |
| HHJ24_RS11065 () | 2244022..2245653 | + | 1632 | WP_001216461.1 | sensor histidine kinase | - |
| HHJ24_RS11070 () | 2245650..2246369 | + | 720 | WP_000611288.1 | two-component system response regulator DcuR | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20087 | HG738867 | 4238430..4247780 | 0.006 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21458 | NC_007779 | 4357262..4366612 | 0.006 | |
| Escherichia coli BW2952 | Genomic island | TA23874 | NC_012759 | 4289342..4298692 | 0.006 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285032 | NZ_HG738867 | 4238430..4247780 | 0.006 |