MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 152994 bp
Accession: NZ_CP053224 Location: 1..152994 Organism: Sphingobium sp. RSMS Replicon: plasmid pRSMS1
Accession: NZ_CP053224 Location: 1..152994 Organism: Sphingobium sp. RSMS Replicon: plasmid pRSMS1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EGM87_RS23140 () | 1..1203 | + | 1203 | WP_015449219.1 | Chromosome-partitioning ATPase Soj | VF |
| EGM87_RS23145 () | 1251..2264 | + | 1014 | WP_028056255.1 | ParB/RepB/Spo0J family partition protein | - |
| EGM87_RS23150 () | 2329..2679 | + | 351 | WP_017183653.1 | hypothetical protein | - |
| EGM87_RS23155 () | 2724..3407 | - | 684 | WP_015449222.1 | RES family NAD+ phosphorylase | - |
| EGM87_RS23160 () | 3407..3805 | - | 399 | WP_015449223.1 | MbcA/ParS/Xre antitoxin family protein | - |
| EGM87_RS23165 () | 3902..5068 | - | 1167 | WP_015449224.1 | hypothetical protein | - |
| EGM87_RS23170 () | 5215..6453 | + | 1239 | WP_013039113.1 | integrase | - |
| EGM87_RS23175 () | 6768..7646 | - | 879 | WP_009824028.1 | AAA family ATPase | - |
| EGM87_RS23180 () | 7573..8973 | - | 1401 | WP_004212864.1 | IS481 family transposase ISGur11 | Transposase |
| EGM87_RS23185 () | 9165..9737 | + | 573 | WP_137710498.1 | Tn3 family transposase TnpR_ISThsp9 | Transposase |
| EGM87_RS23190 () | 10027..11229 | + | 1203 | WP_013039112.1 | aspartyl protease family protein | - |
| EGM87_RS23195 () | 11223..11642 | - | 420 | WP_007406847.1 | helix-turn-helix domain-containing protein | - |
| EGM87_RS23200 () | 11718..12344 | + | 627 | WP_004212870.1 | cation diffusion facilitator family transporter | - |
| EGM87_RS23205 () | 12344..14311 | + | 1968 | WP_004212871.1 | FTR1 family protein | - |
| EGM87_RS23210 () | 14385..14681 | + | 297 | WP_007406840.1 | hypothetical protein | - |
| EGM87_RS23215 () | 14742..16019 | + | 1278 | WP_013039111.1 | TolC family protein | - |
| EGM87_RS23220 () | 16019..17197 | + | 1179 | WP_004212877.1 | efflux RND transporter periplasmic adaptor subunit | - |
| EGM87_RS23225 () | 17201..20446 | + | 3246 | WP_004212878.1 | CusA/CzcA family heavy metal efflux RND transporter | - |
| EGM87_RS23230 () | 20500..20988 | + | 489 | WP_004212879.1 | SRPBCC domain-containing protein | - |
| EGM87_RS23235 () | 20985..21362 | + | 378 | WP_021238674.1 | hypothetical protein | - |
| EGM87_RS23240 () | 21410..21823 | + | 414 | WP_017183574.1 | hypothetical protein | - |
| EGM87_RS23245 () | 21827..22513 | + | 687 | WP_004212882.1 | hypothetical protein | - |
| EGM87_RS23250 () | 22510..23118 | + | 609 | WP_004212885.1 | cation diffusion facilitator family transporter | - |
| EGM87_RS23255 () | 23115..25616 | + | 2502 | WP_004212886.1 | heavy metal translocating P-type ATPase | - |
| EGM87_RS23260 () | 25613..26362 | + | 750 | WP_004212890.1 | HAD-IIB family hydrolase | - |
| EGM87_RS23265 () | 26559..29450 | - | 2892 | WP_137710516.1 | Tn3 family transposase TnpA_ISRsp12 | Transposase |
| EGM87_RS23270 () | 29576..30196 | + | 621 | WP_008832583.1 | Tn3 family transposase TnpR_ISMex22 | Transposase |
| EGM87_RS23275 () | 30193..30723 | + | 531 | WP_007686150.1 | GNAT family N-acetyltransferase | - |
| EGM87_RS23280 () | 30790..32085 | - | 1296 | WP_021247421.1 | hypothetical protein | - |
| EGM87_RS23285 () | 32334..32738 | - | 405 | WP_037462736.1 | copper-binding protein | - |
| EGM87_RS23290 () | 32735..35878 | - | 3144 | WP_025549154.1 | efflux RND transporter permease subunit | - |
| EGM87_RS23295 () | 35875..37365 | - | 1491 | WP_021243085.1 | Cation efflux system protein CusB | VF |
| EGM87_RS23300 () | 37362..38624 | - | 1263 | WP_013039107.1 | TolC family protein | - |
| EGM87_RS23305 () | 38688..38945 | - | 258 | WP_007683334.1 | hypothetical protein | - |
| EGM87_RS23310 () | 39023..39385 | - | 363 | WP_007406428.1 | hypothetical protein | - |
| EGM87_RS23315 () | 39629..39985 | + | 357 | WP_025549152.1 | hypothetical protein | - |
| EGM87_RS23320 () | 40129..40554 | + | 426 | WP_021243089.1 | heavy metal-responsive transcriptional regulator | - |
| EGM87_RS23325 () | 40887..41204 | + | 318 | WP_021243090.1 | hypothetical protein | - |
| EGM87_RS23330 () | 41224..43149 | + | 1926 | WP_137710515.1 | 2Fe-2S iron-sulfur cluster binding domain-containing protein | - |
| EGM87_RS23335 () | 43149..43877 | + | 729 | WP_007406424.1 | hypothetical protein | - |
| EGM87_RS23340 () | 43874..44596 | + | 723 | WP_007406380.1 | hypothetical protein | - |
| EGM87_RS23345 () | 44583..45026 | + | 444 | WP_007406411.1 | DUF1622 domain-containing protein | - |
| EGM87_RS23350 () | 45041..45481 | + | 441 | WP_015449267.1 | four-helix bundle copper-binding protein | - |
| EGM87_RS23355 () | 45814..47037 | + | 1224 | WP_016743863.1 | glycoside hydrolase family 130 protein | - |
| EGM87_RS23360 () | 47266..47556 | + | 291 | WP_007406388.1 | hypothetical protein | - |
| EGM87_RS23365 () | 47875..48276 | + | 402 | WP_015449265.1 | hypothetical protein | - |
| EGM87_RS23370 () | 48425..48754 | + | 330 | WP_025549143.1 | hypothetical protein | - |
| EGM87_RS23375 () | 49008..50528 | + | 1521 | WP_025549141.1 | aldehyde dehydrogenase | - |
| EGM87_RS23380 () | 50555..51580 | + | 1026 | WP_007683342.1 | alcohol dehydrogenase AdhP | - |
| EGM87_RS23385 () | 51606..53312 | + | 1707 | WP_062343367.1 | copper resistance system multicopper oxidase | - |
| EGM87_RS23390 () | 53309..54295 | + | 987 | WP_004212678.1 | copper resistance protein B | - |
| EGM87_RS23395 () | 54289..55530 | + | 1242 | WP_007683345.1 | MFS transporter | - |
| EGM87_RS23400 () | 55610..56047 | + | 438 | WP_007683347.1 | metal-binding protein | - |
| EGM87_RS23405 () | 56431..56694 | + | 264 | WP_004212689.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| EGM87_RS23410 () | 56681..56962 | + | 282 | WP_004212690.1 | type II toxin-antitoxin system YafQ family toxin | Toxin Detail |
| EGM87_RS23415 () | 57364..58056 | + | 693 | Protein_55 | IS21 family transposase ISSsp4 | Transposase |
| EGM87_RS23420 () | 58043..58771 | + | 729 | WP_025549137.1 | IS21 family transposase ISSsp4 | Transposase |
| EGM87_RS23425 () | 58973..59401 | + | 429 | WP_021245211.1 | TonB-dependent receptor | - |
| EGM87_RS23430 () | 59531..62488 | - | 2958 | WP_137710514.1 | Tn3 family transposase TnpA_ISAzs17 | Transposase |
| EGM87_RS23435 () | 62628..63221 | + | 594 | WP_137710513.1 | Tn3 family transposase ISPsy42 | Transposase |
| EGM87_RS23440 () | 63897..66164 | - | 2268 | WP_025549136.1 | nitric-oxide reductase large subunit | - |
| EGM87_RS23445 () | 66243..66707 | - | 465 | WP_004212697.1 | cupin domain-containing protein | - |
| EGM87_RS23450 () | 66965..67423 | - | 459 | WP_137710512.1 | Rrf2 family transcriptional regulator | - |
| EGM87_RS23455 () | 67533..67970 | + | 438 | WP_004212701.1 | group III truncated hemoglobin | - |
| EGM87_RS23460 () | 67963..68238 | + | 276 | WP_004212703.1 | DUF1971 domain-containing protein | - |
| EGM87_RS23465 () | 68279..69490 | + | 1212 | WP_004212704.1 | NO-inducible flavohemoprotein | - |
| EGM87_RS23470 () | 69503..69964 | + | 462 | WP_137710511.1 | hypothetical protein | - |
| EGM87_RS23475 () | 70214..70507 | + | 294 | Protein_67 | YbaY family lipoprotein | - |
| EGM87_RS23480 () | 70643..71002 | + | 360 | WP_072599052.1 | META domain-containing protein | - |
| EGM87_RS23485 () | 71348..72991 | + | 1644 | WP_004212708.1 | cytochrome-c oxidase, cbb3-type subunit I | - |
| EGM87_RS23490 () | 72995..73747 | + | 753 | WP_004212709.1 | cytochrome-c oxidase, cbb3-type subunit II | - |
| EGM87_RS23495 () | 73763..73933 | + | 171 | WP_004212711.1 | cbb3-type cytochrome c oxidase subunit 3 | - |
| EGM87_RS23500 () | 73924..74802 | + | 879 | WP_004212713.1 | cytochrome-c oxidase, cbb3-type subunit III | - |
| EGM87_RS23505 () | 75001..75819 | + | 819 | WP_004212715.1 | DUF2189 domain-containing protein | - |
| EGM87_RS23510 () | 75822..78083 | + | 2262 | WP_004212717.1 | cadmium-translocating P-type ATPase | - |
| EGM87_RS23515 () | 78080..78289 | + | 210 | WP_004212718.1 | cbb3-type cytochrome oxidase assembly protein CcoS | - |
| EGM87_RS23520 () | 78646..79818 | + | 1173 | WP_137710510.1 | cystathionine gamma-synthase | - |
| EGM87_RS23525 () | 79853..80098 | + | 246 | WP_015449329.1 | hypothetical protein | - |
| EGM87_RS23530 () | 80177..80506 | + | 330 | WP_015449330.1 | hypothetical protein | - |
| EGM87_RS23535 () | 80772..81128 | + | 357 | WP_137710509.1 | hypothetical protein | - |
| EGM87_RS23540 () | 81178..81351 | + | 174 | WP_171010098.1 | hypothetical protein | - |
| EGM87_RS23545 () | 81348..81950 | - | 603 | WP_030089511.1 | hypothetical protein | - |
| EGM87_RS23550 () | 82171..82932 | + | 762 | WP_015449332.1 | Transcriptional activator protein LuxR | VF |
| EGM87_RS23555 () | 82946..83692 | + | 747 | WP_137710508.1 | Transcriptional activator protein LuxR | VF |
| EGM87_RS23560 () | 83765..84376 | + | 612 | WP_030089508.1 | 4-coumaroyl-homoserine lactone synthase | VF |
| EGM87_RS23565 () | 84387..85334 | + | 948 | WP_137710507.1 | phytanoyl-CoA dioxygenase family protein | - |
| EGM87_RS23570 () | 85385..85726 | + | 342 | WP_081876097.1 | hypothetical protein | - |
| EGM87_RS23575 () | 85723..86391 | + | 669 | WP_030089506.1 | Type IV secretion system protein virB1 | VF |
| EGM87_RS23580 () | 86388..86726 | + | 339 | WP_021245259.1 | TrbC/VirB2 family protein | - |
| EGM87_RS23585 () | 86723..87073 | + | 351 | WP_021245260.1 | Type IV secretion system protein virB3 | VF |
| EGM87_RS23590 () | 87066..89477 | + | 2412 | WP_137710506.1 | Type IV secretion system protein virB4 | VF |
| EGM87_RS23595 () | 89481..90200 | + | 720 | WP_015449341.1 | type IV secretion system protein | - |
| EGM87_RS23600 () | 90197..90412 | + | 216 | WP_137710505.1 | EexN family lipoprotein | - |
| EGM87_RS23605 () | 90431..91375 | + | 945 | WP_015449342.1 | type IV secretion system protein | - |
| EGM87_RS23610 () | 91710..92408 | + | 699 | WP_015449344.1 | Type IV secretion system protein virB8 | VF |
| EGM87_RS23615 () | 92405..93262 | + | 858 | WP_137710504.1 | Type IV secretion system protein virB9 | VF |
| EGM87_RS23620 () | 93266..94489 | + | 1224 | WP_015449346.1 | Type IV secretion system protein virB10 | VF |
| EGM87_RS23625 () | 94493..95497 | + | 1005 | WP_007684605.1 | Type IV secretion system protein VirB11 | VF |
| EGM87_RS23630 () | 95481..97442 | + | 1962 | WP_015449347.1 | Protein VirD4 | VF |
| EGM87_RS23635 () | 97432..98295 | + | 864 | WP_015449348.1 | hypothetical protein | - |
| EGM87_RS23640 () | 98341..99033 | + | 693 | WP_015449349.1 | hypothetical protein | - |
| EGM87_RS23645 () | 99094..99870 | + | 777 | WP_050983539.1 | DUF3883 domain-containing protein | - |
| EGM87_RS23650 () | 99907..100890 | - | 984 | WP_015449350.1 | WYL domain-containing protein | - |
| EGM87_RS23655 () | 101040..104294 | + | 3255 | WP_171010099.1 | TM0106 family RecB-like putative nuclease | - |
| EGM87_RS23660 () | 104298..105407 | + | 1110 | WP_030091334.1 | DNA repair exonuclease | - |
| EGM87_RS23665 () | 105404..108034 | + | 2631 | WP_015449353.1 | AAA family ATPase | - |
| EGM87_RS23670 () | 108203..113317 | + | 5115 | WP_015449354.1 | DEAD/DEAH box helicase | - |
| EGM87_RS23675 () | 113314..116115 | + | 2802 | WP_171010096.1 | helicase | - |
| EGM87_RS23680 () | 116115..119201 | + | 3087 | Protein_108 | N-6 DNA methylase | - |
| EGM87_RS23685 () | 120182..120979 | + | 798 | WP_137710503.1 | HNH endonuclease | - |
| EGM87_RS23690 () | 121022..122284 | - | 1263 | WP_015449358.1 | Y-family DNA polymerase | - |
| EGM87_RS23695 () | 122292..122729 | - | 438 | WP_137710522.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| EGM87_RS23700 () | 122881..125073 | + | 2193 | WP_015449360.1 | helix-turn-helix domain-containing protein | - |
| EGM87_RS23705 () | 125093..126997 | + | 1905 | WP_015449361.1 | DUF262 domain-containing protein | - |
| EGM87_RS23710 () | 127189..127392 | - | 204 | WP_041865621.1 | hypothetical protein | - |
| EGM87_RS23715 () | 127581..128258 | + | 678 | WP_007684587.1 | hypothetical protein | - |
| EGM87_RS23720 () | 128238..128864 | - | 627 | WP_041865604.1 | hypothetical protein | - |
| EGM87_RS23725 () | 129010..130116 | - | 1107 | WP_015449364.1 | T-DNA border endonuclease VirD2 | Relaxase |
| EGM87_RS23730 () | 130109..130645 | - | 537 | WP_015449365.1 | hypothetical protein | Relaxase |
| EGM87_RS23735 () | 130897..131829 | - | 933 | WP_015449366.1 | ParB/RepB/Spo0J family partition protein | - |
| EGM87_RS23740 () | 131829..132593 | - | 765 | WP_021245271.1 | ParA family protein | - |
| EGM87_RS23745 () | 132607..132783 | - | 177 | WP_017182162.1 | hypothetical protein | - |
| EGM87_RS23750 () | 132967..133359 | - | 393 | WP_021245272.1 | DUF3768 domain-containing protein | - |
| EGM87_RS23755 () | 133945..134109 | + | 165 | WP_007682673.1 | hypothetical protein | - |
| EGM87_RS23760 () | 134203..134724 | + | 522 | WP_021223781.1 | hypothetical protein | - |
| EGM87_RS23765 () | 134869..135303 | + | 435 | WP_025546704.1 | hypothetical protein | - |
| EGM87_RS23770 () | 135379..135786 | - | 408 | WP_046765830.1 | single-stranded DNA-binding protein | - |
| EGM87_RS23775 () | 136219..136854 | - | 636 | WP_137710502.1 | hypothetical protein | - |
| EGM87_RS23780 () | 136965..137906 | - | 942 | WP_020820493.1 | DUF2493 domain-containing protein | - |
| EGM87_RS23785 () | 138464..139648 | - | 1185 | WP_015449370.1 | Na+/H+ antiporter NhaA | - |
| EGM87_RS23790 () | 139816..141120 | - | 1305 | WP_015449371.1 | SLC13 family permease | - |
| EGM87_RS23795 () | 141257..142090 | + | 834 | WP_137710521.1 | hypothetical protein | - |
| EGM87_RS23800 () | 142381..143301 | - | 921 | WP_137710501.1 | DUF1738 domain-containing protein | - |
| EGM87_RS23805 () | 143400..145412 | - | 2013 | WP_065846519.1 | ParB/RepB/Spo0J family partition protein | - |
| EGM87_RS23810 () | 145524..149723 | - | 4200 | WP_171010095.1 | strawberry notch family protein | - |
| EGM87_RS23815 () | 149790..150656 | - | 867 | WP_137710500.1 | toprim domain-containing protein | - |
| EGM87_RS23820 () | 150719..151045 | - | 327 | WP_015449217.1 | single-stranded DNA-binding protein | - |
| EGM87_RS23825 () | 151712..152800 | + | 1089 | WP_041865596.1 | replication initiation protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|