NZ_CP053222969548..1174967

MGE detailed information

MGE type: Integrative_Conjugative_Elements        MGE length: 205420 bp
Accession: NZ_CP053222        Location: 969548..1174967         Organism: Sphingobium sp. RSMS       Replicon: chromosome


Gene structure


The 5 kb flanking regions of this MGE are displayed.

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
EGM87_RS04465 () 965910..966383 - 474 WP_025551551.1 Lrp/AsnC family transcriptional regulator -
EGM87_RS04470 () 966588..968297 + 1710 WP_171010026.1 HAMP domain-containing histidine kinase -
EGM87_RS04475 () 968349..969386 + 1038 WP_137709743.1 polysaccharide deacetylase family protein -
EGM87_RS04485 () 969643..971028 + 1386 WP_076605735.1 integrase arm-type DNA-binding domain-containing protein -
EGM87_RS04490 () 971069..971773 - 705 WP_044662110.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
EGM87_RS04495 () 971778..972041 - 264 WP_044663123.1 hypothetical protein -
EGM87_RS04500 () 972261..972569 - 309 WP_044662111.1 DUF1778 domain-containing protein -
EGM87_RS04505 () 972744..973025 - 282 WP_082718616.1 AlpA family phage regulatory protein -
EGM87_RS04510 () 973037..973213 + 177 WP_157009830.1 hypothetical protein -
EGM87_RS04515 () 973449..973760 + 312 WP_171010042.1 hypothetical protein -
EGM87_RS04520 () 973744..977472 - 3729 WP_044663125.1 conjugal transfer protein TraG N-terminal domain-containing protein -
EGM87_RS04525 () 977486..978907 - 1422 WP_044662112.1 conjugal transfer protein TraH -
EGM87_RS04530 () 979035..980201 + 1167 WP_044662113.1 ATP-binding protein -
EGM87_RS04535 () 980234..980830 - 597 WP_044662114.1 hypothetical protein -
EGM87_RS04540 () 980827..981675 - 849 WP_044662115.1 conjugal transfer protein TraF -
EGM87_RS04545 () 981672..982271 - 600 WP_044662116.1 S26 family signal peptidase -
EGM87_RS04550 () 982243..982872 - 630 WP_082718620.1 type-F conjugative transfer system pilin assembly protein TrbC -
EGM87_RS04555 () 983063..984097 - 1035 WP_044663127.1 conjugal transfer protein TraN -
EGM87_RS04560 () 984157..986088 - 1932 WP_044662117.1 hypothetical protein -
EGM87_RS04565 () 986456..987463 - 1008 WP_044663128.1 TraU family protein -
EGM87_RS04570 () 987560..987868 + 309 WP_044663129.1 DUF1778 domain-containing protein -
EGM87_RS04575 () 987896..988420 + 525 WP_044662118.1 GNAT family N-acetyltransferase -
EGM87_RS04580 () 988450..989085 - 636 WP_044662119.1 conjugal transfer protein TraW -
EGM87_RS04585 () 989075..989311 - 237 WP_044662120.1 hypothetical protein -
EGM87_RS04590 () 989308..989637 - 330 WP_044662121.1 hypothetical protein -
EGM87_RS04595 () 989637..992156 - 2520 WP_061934585.1 TraC family protein -
EGM87_RS04600 () 992153..992788 - 636 WP_044662123.1 TraV family lipoprotein -
EGM87_RS04605 () 992821..994110 - 1290 WP_044662124.1 TraB/VirB10 family protein -
EGM87_RS04610 () 994200..994967 - 768 WP_044662125.1 type-F conjugative transfer system secretin TraK -
EGM87_RS04615 () 994951..995586 - 636 WP_044662126.1 conjugal transfer protein -
EGM87_RS04620 () 995595..995861 - 267 WP_044662127.1 membrane protein -
EGM87_RS04625 () 995988..996332 - 345 WP_044662128.1 hypothetical protein -
EGM87_RS04630 () 996518..997300 - 783 WP_044662129.1 DsbC family protein -
EGM87_RS04635 () 997889..998308 + 420 WP_044662131.1 hypothetical protein -
EGM87_RS04640 () 998546..998965 + 420 WP_044662132.1 helix-turn-helix domain-containing protein -
EGM87_RS04645 () 998975..999607 + 633 WP_044662133.1 GntR family transcriptional regulator -
EGM87_RS04650 () 999731..999865 + 135 WP_137709742.1 benenodin family lasso peptide -
EGM87_RS04655 () 999931..1000587 + 657 WP_082718614.1 lasso peptide biosynthesis B2 protein -
EGM87_RS04660 () 1000587..1002344 + 1758 WP_044662135.1 asparagine synthase C-terminal domain-containing protein -
EGM87_RS04665 () 1002421..1002906 - 486 WP_044662136.1 RES family NAD+ phosphorylase Toxin Detail
EGM87_RS04670 () 1002903..1003382 - 480 WP_044662137.1 MbcA/ParS/Xre antitoxin family protein Antitoxin Detail
EGM87_RS04675 () 1003470..1005551 - 2082 WP_044662138.1 Atxe2 family lasso peptide isopeptidase -
EGM87_RS04680 () 1005551..1008115 - 2565 WP_052628225.1 TonB-dependent receptor -
EGM87_RS04685 () 1008207..1009205 - 999 WP_052628226.1 FecR domain-containing protein -
EGM87_RS04690 () 1009198..1009764 - 567 WP_044662140.1 RNA polymerase sigma factor -
EGM87_RS04695 () 1010308..1012527 - 2220 WP_044662141.1 DEAD/DEAH box helicase -
EGM87_RS04700 () 1012508..1013791 - 1284 WP_044662142.1 ATP-binding protein -
EGM87_RS04705 () 1013788..1015794 - 2007 WP_052628227.1 TerB N-terminal domain-containing protein -
EGM87_RS04710 () 1016362..1018344 + 1983 WP_082718612.1 anti-phage defense ZorAB system ZorA -
EGM87_RS04715 () 1018350..1019060 + 711 WP_044662144.1 OmpA family protein -
EGM87_RS04720 () 1019069..1020721 + 1653 WP_061934581.1 hypothetical protein -
EGM87_RS04725 () 1020718..1023939 + 3222 WP_044662146.1 DEAD/DEAH box helicase -
EGM87_RS04730 () 1024004..1025257 + 1254 WP_171010024.1 DNA repair exonuclease -
EGM87_RS04735 () 1025257..1028700 + 3444 WP_044662148.1 YhaN family protein -
EGM87_RS04740 () 1028697..1031357 - 2661 WP_044662149.1 AAA family ATPase -
EGM87_RS04745 () 1031667..1032296 + 630 WP_044662150.1 Acetylornithine deacetylase ; Integrase Integrase
EGM87_RS04750 () 1032395..1033054 - 660 WP_044662151.1 cation diffusion facilitator family transporter -
EGM87_RS04755 () 1033132..1033530 + 399 WP_044662152.1 IS607 family transposase IS607 Transposase
EGM87_RS04760 () 1033567..1033956 - 390 WP_171010023.1 copper-binding protein -
EGM87_RS04765 () 1033968..1037111 - 3144 WP_044662154.1 efflux RND transporter permease subunit -
EGM87_RS04770 () 1037108..1038595 - 1488 WP_044662155.1 efflux RND transporter periplasmic adaptor subunit -
EGM87_RS04775 () 1038592..1039824 - 1233 WP_044662156.1 TolC family protein -
EGM87_RS04780 () 1040311..1040673 - 363 WP_044662157.1 hypothetical protein -
EGM87_RS04785 () 1040939..1041676 - 738 WP_044662158.1 arsenical resistance protein ArsH -
EGM87_RS04790 () 1041651..1042328 - 678 WP_044662159.1 aquaporin family protein -
EGM87_RS04795 () 1042376..1042807 - 432 WP_044662160.1 arsenate reductase (glutaredoxin) -
EGM87_RS04800 () 1042882..1043211 - 330 WP_044662161.1 metalloregulator ArsR/SmtB family transcription factor -
EGM87_RS04805 () 1043443..1043703 + 261 WP_044662162.1 hypothetical protein -
EGM87_RS04810 () 1043831..1044541 - 711 WP_044662163.1 hypothetical protein -
EGM87_RS04815 () 1044766..1044966 + 201 WP_076605733.1 hypothetical protein -
EGM87_RS04820 () 1045002..1045670 - 669 WP_044662164.1 dienelactone hydrolase family protein -
EGM87_RS04825 () 1045825..1046649 - 825 WP_044662165.1 MucR family transcriptional regulator -
EGM87_RS04830 () 1046876..1047352 + 477 WP_137709741.1 hypothetical protein -
EGM87_RS04835 () 1048005..1048451 - 447 WP_044662166.1 hypothetical protein -
EGM87_RS04840 () 1048505..1048849 - 345 WP_044662167.1 hypothetical protein -
EGM87_RS04845 () 1048913..1049491 - 579 WP_137709740.1 Surface presentation of antigens protein SpaO VF
EGM87_RS04850 () 1049778..1050218 + 441 WP_076605732.1 hypothetical protein -
EGM87_RS04855 () 1050290..1051099 + 810 WP_084694384.1 toprim domain-containing protein -
EGM87_RS04860 () 1051133..1053148 + 2016 WP_044662170.1 ParB/RepB/Spo0J family partition protein -
EGM87_RS04865 () 1053282..1057619 + 4338 WP_044662171.1 strawberry notch family protein -
EGM87_RS04870 () 1057828..1058007 + 180 WP_044663135.1 hypothetical protein -
EGM87_RS04875 () 1058072..1058536 + 465 WP_044662172.1 hypothetical protein -
EGM87_RS04880 () 1058660..1059376 + 717 WP_052628230.1 ATP-binding protein -
EGM87_RS04885 () 1059357..1060319 + 963 WP_052628231.1 hypothetical protein -
EGM87_RS04890 () 1060428..1061618 + 1191 WP_044662173.1 hypothetical protein -
EGM87_RS04895 () 1061677..1062261 + 585 WP_044662174.1 hypothetical protein -
EGM87_RS04900 () 1062435..1062626 + 192 WP_044663136.1 hypothetical protein -
EGM87_RS04905 () 1062648..1063490 + 843 WP_044662175.1 hypothetical protein -
EGM87_RS04910 () 1063551..1063805 + 255 WP_044662176.1 antitoxin -
EGM87_RS04915 () 1063802..1064113 + 312 WP_044662177.1 type II toxin-antitoxin system RelE/ParE family toxin -
EGM87_RS04920 () 1064288..1064641 - 354 WP_044663137.1 DUF4186 domain-containing protein -
EGM87_RS04925 () 1064798..1065073 - 276 WP_044662178.1 HU family DNA-binding protein -
EGM87_RS04930 () 1065165..1065572 - 408 WP_044662179.1 HIRAN domain-containing protein -
EGM87_RS04935 () 1065673..1066836 + 1164 WP_044662180.1 winged helix-turn-helix domain-containing protein -
EGM87_RS04940 () 1066957..1067169 + 213 WP_044663138.1 hypothetical protein -
EGM87_RS04945 () 1067491..1067952 + 462 WP_037544061.1 DUF736 domain-containing protein -
EGM87_RS04950 () 1068048..1069100 + 1053 WP_044662181.1 DUF2493 domain-containing protein -
EGM87_RS04955 () 1069072..1069287 + 216 WP_037543859.1 hypothetical protein -
EGM87_RS04960 () 1069689..1070642 + 954 WP_052628232.1 DUF2493 domain-containing protein -
EGM87_RS04965 () 1071044..1072255 - 1212 WP_011950834.1 IS256 family transposase ISSpma2 Transposase
EGM87_RS04970 () 1072411..1072554 - 144 WP_157009832.1 hypothetical protein -
EGM87_RS04975 () 1072937..1073167 + 231 WP_044662182.1 hypothetical protein -
EGM87_RS04980 () 1073591..1073893 + 303 WP_044662183.1 hypothetical protein -
EGM87_RS04985 () 1073890..1075896 + 2007 WP_044662184.1 type IV secretion system DNA-binding domain-containing protein -
EGM87_RS04990 () 1075893..1078838 + 2946 WP_044662185.1 relaxase domain-containing protein -
EGM87_RS04995 () 1078816..1079358 + 543 WP_082718609.1 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase VF
EGM87_RS05000 () 1079489..1079662 - 174 WP_171010022.1 hypothetical protein -
EGM87_RS05005 () 1080731..1081264 + 534 WP_044662186.1 helix-turn-helix transcriptional regulator -
EGM87_RS05010 () 1081395..1082546 + 1152 WP_044662187.1 sulfotransferase -
EGM87_RS05015 () 1082578..1083711 + 1134 WP_044662188.1 hypothetical protein -
EGM87_RS05020 () 1083824..1084573 + 750 WP_044662189.1 HTH-type transcriptional regulator GalR VF
EGM87_RS05025 () 1084583..1086073 - 1491 WP_044662190.1 aldehyde dehydrogenase family protein -
EGM87_RS05030 () 1086070..1087691 - 1622 Protein_986 GMC family oxidoreductase N-terminal domain-containing protein -
EGM87_RS05035 () 1087786..1088697 - 912 WP_044662191.1 SMP-30/gluconolactonase/LRE family protein -
EGM87_RS05040 () 1089046..1091418 + 2373 WP_061934570.1 TonB-dependent receptor -
EGM87_RS05045 () 1091536..1092930 + 1395 WP_044662192.1 hypothetical protein -
EGM87_RS05050 () 1093227..1095659 + 2433 WP_044662193.1 Vitamin B12 transporter BtuB VF
EGM87_RS05055 () 1095824..1096072 + 249 WP_044662194.1 hypothetical protein -
EGM87_RS05060 () 1096432..1097733 + 1302 WP_171010041.1 MFS transporter -
EGM87_RS05065 () 1097818..1098705 + 888 WP_044662195.1 Prolipoprotein diacylglyceryl transferase VF
EGM87_RS05070 () 1098863..1100278 + 1416 WP_044662196.1 hypothetical protein -
EGM87_RS05075 () 1100287..1101744 + 1458 WP_044662197.1 long-chain-fatty-acyl-CoA reductase -
EGM87_RS05080 () 1101759..1103471 + 1713 WP_044663144.1 Allantoinase VF
EGM87_RS05085 () 1103472..1104551 - 1080 WP_044662198.1 aldo/keto reductase -
EGM87_RS05090 () 1104548..1105960 - 1413 WP_044662199.1 long-chain-fatty-acyl-CoA reductase -
EGM87_RS05095 () 1105977..1107353 - 1377 WP_044662200.1 hypothetical protein -
EGM87_RS05100 () 1107451..1107947 + 497 Protein_1000 nuclear transport factor 2 family protein -
EGM87_RS05105 () 1107960..1108982 + 1023 WP_044662202.1 LLM class flavin-dependent oxidoreductase -
EGM87_RS05110 () 1108975..1110033 + 1059 WP_044662203.1 hypothetical protein -
EGM87_RS05115 () 1110086..1110892 + 807 WP_044662204.1 Amino-acid acetyltransferase VF
EGM87_RS05120 () 1110933..1111373 + 441 WP_082718608.1 nuclear transport factor 2 family protein -
EGM87_RS05125 () 1111379..1111636 - 258 WP_017183047.1 cytochrome C oxidase subunit IV family protein -
EGM87_RS05130 () 1111649..1112230 - 582 WP_044662206.1 cytochrome c oxidase subunit 3 -
EGM87_RS05135 () 1112230..1112931 - 702 WP_044662207.1 hypothetical protein -
EGM87_RS05140 () 1113097..1113489 + 393 WP_044662208.1 nuclear transport factor 2 family protein -
EGM87_RS05145 () 1113486..1114859 + 1374 WP_044662209.1 phosphotransferase -
EGM87_RS05150 () 1114940..1115782 + 843 WP_044662210.1 Glycine cleavage system transcriptional activator VF
EGM87_RS05155 () 1115817..1116599 + 783 WP_044662211.1 hypothetical protein -
EGM87_RS05160 () 1116604..1117236 - 633 WP_044662212.1 glutathione S-transferase family protein -
EGM87_RS05165 () 1117390..1118208 + 819 WP_044662213.1 putative HTH-type transcriptional regulator YdjF VF
EGM87_RS05170 () 1118225..1118605 + 381 WP_044662214.1 VOC family protein -
EGM87_RS05175 () 1118664..1119491 + 828 WP_044662215.1 SDR family oxidoreductase -
EGM87_RS05180 () 1119507..1120601 - 1095 WP_044662216.1 phosphotransferase -
EGM87_RS05185 () 1120741..1121955 + 1215 WP_044662217.1 aromatic ring-hydroxylating dioxygenase subunit alpha -
EGM87_RS05190 () 1122023..1123171 - 1149 WP_044662218.1 DUF1679 domain-containing protein -
EGM87_RS05195 () 1123311..1124453 - 1143 WP_044662219.1 epoxide hydrolase -
EGM87_RS05200 () 1124469..1125563 - 1095 WP_044662220.1 phosphotransferase -
EGM87_RS05205 () 1125567..1127144 - 1578 WP_044662221.1 NAD(P)/FAD-dependent oxidoreductase -
EGM87_RS05210 () 1127171..1128007 - 837 WP_044662222.1 SDR family NAD(P)-dependent oxidoreductase -
EGM87_RS05215 () 1128222..1129481 + 1260 WP_044662223.1 acyl-CoA dehydrogenase family protein -
EGM87_RS05220 () 1129499..1129864 + 366 WP_009823784.1 hypothetical protein -
EGM87_RS05225 () 1129872..1130579 + 708 WP_044662224.1 TetR/AcrR family transcriptional regulator -
EGM87_RS05230 () 1130634..1130990 - 357 WP_044663145.1 hypothetical protein -
EGM87_RS05235 () 1131166..1131906 + 741 WP_044662225.1 GntR family transcriptional regulator -
EGM87_RS05240 () 1131909..1133072 + 1164 WP_044662226.1 hypothetical protein VF
EGM87_RS05245 () 1133153..1134376 + 1224 WP_044662227.1 cytochrome P450 -
EGM87_RS05250 () 1134420..1135019 - 600 WP_044662228.1 malonic semialdehyde reductase -
EGM87_RS05255 () 1135030..1135611 - 582 WP_044662229.1 Glucarate dehydratase-related protein VF
EGM87_RS05260 () 1135616..1136536 - 921 WP_044662230.1 zinc-binding alcohol dehydrogenase family protein -
EGM87_RS05265 () 1136625..1137869 - 1245 WP_044662231.1 acyl-CoA dehydrogenase family protein -
EGM87_RS05270 () 1137856..1138488 - 633 WP_044662232.1 TetR/AcrR family transcriptional regulator -
EGM87_RS05275 () 1138485..1139297 - 813 WP_044662233.1 GTP pyrophosphokinase VF
EGM87_RS05280 () 1139294..1140463 - 1170 WP_044662234.1 FAD-dependent oxidoreductase -
EGM87_RS05285 () 1140478..1141053 - 576 WP_044662235.1 3-phenylpropionate/cinnamic acid dioxygenase subunit beta -
EGM87_RS05290 () 1141082..1142467 - 1386 WP_044662236.1 aromatic ring-hydroxylating dioxygenase subunit alpha -
EGM87_RS05295 () 1142566..1142772 + 207 WP_044662237.1 ferredoxin -
EGM87_RS05300 () 1142886..1144034 + 1149 WP_076605696.1 NADH:flavin oxidoreductase -
EGM87_RS05305 () 1144065..1144790 - 726 WP_044662239.1 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase VF
EGM87_RS05310 () 1144813..1145814 - 1002 WP_044662240.1 NADP-dependent oxidoreductase -
EGM87_RS05315 () 1145807..1146250 - 444 WP_044662241.1 nuclear transport factor 2 family protein -
EGM87_RS05320 () 1146392..1148728 - 2337 WP_044662242.1 membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family -
EGM87_RS05325 () 1148766..1149221 - 456 WP_044662243.1 nuclear transport factor 2 family protein -
EGM87_RS05330 () 1149382..1149906 + 525 WP_017180908.1 ester cyclase -
EGM87_RS05335 () 1149980..1151050 + 1071 WP_044662244.1 hypothetical protein -
EGM87_RS05340 () 1151066..1151821 - 756 WP_044662245.1 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase VF
EGM87_RS05345 () 1151818..1152672 - 855 WP_044662246.1 alpha/beta fold hydrolase -
EGM87_RS05350 () 1152672..1153196 - 525 WP_044662247.1 VOC family protein -
EGM87_RS05355 () 1153247..1153636 - 390 WP_044662248.1 MaoC family dehydratase -
EGM87_RS05360 () 1153633..1154091 - 459 WP_044662249.1 hypothetical protein -
EGM87_RS05365 () 1154101..1155264 - 1164 WP_044662250.1 acyl-CoA/acyl-ACP dehydrogenase -
EGM87_RS05370 () 1155327..1155881 - 555 WP_044662251.1 NAD(P)H-dependent oxidoreductase -
EGM87_RS05375 () 1155883..1156659 - 777 WP_044662252.1 putative protein YgcP VF
EGM87_RS05380 () 1156656..1157396 - 741 WP_076605697.1 alpha/beta hydrolase -
EGM87_RS05385 () 1157402..1158358 - 957 WP_044662254.1 VOC family protein -
EGM87_RS05390 () 1158411..1159262 - 852 WP_137709739.1 fumarylacetoacetate hydrolase family protein -
EGM87_RS05395 () 1159361..1160101 + 741 WP_044662256.1 FCD domain-containing protein -
EGM87_RS05400 () 1160109..1160891 - 783 WP_044662257.1 Sulfite reductase [NADPH] hemoprotein beta-component VF
EGM87_RS05405 () 1160933..1162603 - 1671 WP_044662258.1 acyl--CoA ligase -
EGM87_RS05410 () 1162756..1163958 + 1203 WP_044662259.1 acetyl-CoA C-acetyltransferase -
EGM87_RS05415 () 1163992..1166160 + 2169 WP_044662260.1 CRISPR-associated endonuclease/helicase Cas3 VF
EGM87_RS05420 () 1166157..1167314 + 1158 WP_044662261.1 acyl-CoA dehydrogenase family protein -
EGM87_RS05425 () 1167338..1168216 + 879 WP_044662262.1 MaoC family dehydratase N-terminal domain-containing protein -
EGM87_RS05430 () 1168213..1169040 + 828 WP_044662263.1 CRISPR system Cascade subunit CasC VF
EGM87_RS05435 () 1169076..1169582 - 507 WP_044662264.1 nuclear transport factor 2 family protein -
EGM87_RS05440 () 1169626..1170402 - 777 WP_044662265.1 CRISPR system Cascade subunit CasE VF
EGM87_RS05445 () 1170399..1171400 - 1002 WP_044662266.1 zinc-binding dehydrogenase -
EGM87_RS05450 () 1171763..1174297 + 2535 WP_044662267.1 CRISPR-associated endoribonuclease Cas2 VF
EGM87_RS05455 () 1174381..1175310 + 930 WP_044662268.1 3-keto-5-aminohexanoate cleavage protein -
EGM87_RS05460 () 1175310..1176408 + 1099 Protein_1072 CoA transferase -
EGM87_RS05465 () 1176697..1179078 + 2382 WP_044662270.1 TonB-dependent receptor -

Similar MGE(s)


Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.

Detail Organism MGE type Related TA Genome accession Coordinates Mash
distance