MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 76798 bp
Accession: NZ_CP053222 Location: 2395875..2472672 Organism: Sphingobium sp. RSMS Replicon: chromosome
Accession: NZ_CP053222 Location: 2395875..2472672 Organism: Sphingobium sp. RSMS Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EGM87_RS11450 () | 2391004..2392131 | - | 1128 | WP_044660216.1 | peptide chain release factor 2 | - |
| EGM87_RS11455 () | 2392314..2393207 | - | 894 | WP_044660217.1 | N-formylglutamate amidohydrolase | - |
| EGM87_RS11460 () | 2393357..2393734 | + | 378 | WP_025551641.1 | response regulator | - |
| EGM87_RS11465 () | 2393731..2395065 | - | 1335 | WP_044660218.1 | dicarboxylate/amino acid:cation symporter | - |
| EGM87_RS11475 () | 2395778..2396815 | + | 1038 | WP_048578270.1 | site-specific integrase | - |
| EGM87_RS11480 () | 2397196..2397543 | + | 348 | WP_025551779.1 | helix-turn-helix domain-containing protein | - |
| EGM87_RS11485 () | 2397544..2398851 | + | 1308 | WP_025551780.1 | type II toxin-antitoxin system HipA family toxin | - |
| EGM87_RS11490 () | 2398872..2399037 | + | 166 | Protein_2260 | Copper homeostasis protein CutC ; Integrase | Integrase |
| EGM87_RS11495 () | 2399327..2399995 | - | 669 | WP_099186142.1 | haloacid dehalogenase type II | - |
| EGM87_RS11500 () | 2400197..2401966 | + | 1770 | WP_137710321.1 | dihydroxy-acid dehydratase | - |
| EGM87_RS11505 () | 2401967..2402893 | + | 927 | WP_044660222.1 | glyoxylate/hydroxypyruvate reductase A | - |
| EGM87_RS11510 () | 2403054..2404376 | - | 1323 | WP_137710320.1 | FAD-binding oxidoreductase | - |
| EGM87_RS11515 () | 2405201..2405728 | - | 528 | WP_025551790.1 | hypothetical protein | - |
| EGM87_RS11520 () | 2405725..2406159 | - | 435 | WP_025551792.1 | hypothetical protein | - |
| EGM87_RS11525 () | 2406186..2406569 | - | 384 | WP_025551794.1 | hypothetical protein | - |
| EGM87_RS11530 () | 2406629..2407081 | - | 453 | WP_044660225.1 | helix-turn-helix transcriptional regulator | - |
| EGM87_RS11535 () | 2407227..2407508 | + | 282 | WP_146001621.1 | hypothetical protein | - |
| EGM87_RS11540 () | 2407533..2407862 | + | 330 | WP_044660226.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| EGM87_RS11545 () | 2407877..2408308 | + | 432 | WP_044660227.1 | arsenate reductase (glutaredoxin) | - |
| EGM87_RS11550 () | 2408305..2408973 | + | 669 | WP_099186148.1 | aquaporin family protein | - |
| EGM87_RS11555 () | 2409014..2409766 | + | 753 | WP_099186149.1 | arsenical resistance protein ArsH | - |
| EGM87_RS11560 () | 2409921..2410625 | - | 705 | Protein_2274 | IS1182 family transposase ISPa7 | Transposase |
| EGM87_RS11565 () | 2411119..2411592 | + | 474 | WP_025548302.1 | Hsp20 family protein | - |
| EGM87_RS11570 () | 2411667..2412182 | + | 516 | WP_025548303.1 | High-affinity zinc uptake system membrane protein ZnuB | VF |
| EGM87_RS11575 () | 2412375..2412722 | + | 348 | WP_128830709.1 | ETC complex I subunit | - |
| EGM87_RS11580 () | 2412739..2413287 | + | 549 | WP_137710317.1 | hypothetical protein | - |
| EGM87_RS11585 () | 2413392..2414024 | + | 633 | WP_044660232.1 | NAAT family transporter | - |
| EGM87_RS11590 () | 2414033..2414409 | - | 377 | Protein_2280 | hypothetical protein | - |
| EGM87_RS11595 () | 2414387..2414656 | - | 270 | WP_025548307.1 | usg protein | - |
| EGM87_RS11600 () | 2414653..2414889 | - | 237 | WP_048577279.1 | hypothetical protein | - |
| EGM87_RS11605 () | 2415162..2415476 | + | 315 | WP_025548310.1 | co-chaperone GroES | - |
| EGM87_RS11610 () | 2415532..2417151 | + | 1620 | WP_025548312.1 | 60 kDa chaperonin | VF |
| EGM87_RS11615 () | 2417286..2418134 | - | 849 | WP_137710316.1 | IS3 family transposase ISMco1 | Transposase |
| EGM87_RS11620 () | 2418083..2418430 | - | 348 | WP_037484504.1 | IS3 family transposase ISAcma13 | Transposase |
| EGM87_RS11625 () | 2418652..2419380 | - | 729 | WP_099185604.1 | IS21 family transposase ISSsp4 | Transposase |
| EGM87_RS11630 () | 2419522..2420382 | - | 861 | WP_099185852.1 | IS21 family transposase ISMex13 | Transposase |
| EGM87_RS11635 () | 2420379..2421641 | - | 1263 | WP_099185853.1 | IS21 family transposase ISMex13 | Transposase |
| EGM87_RS11640 () | 2421752..2423233 | - | 1482 | WP_137710315.1 | IS21 family transposase ISSsp4 | Transposase |
| EGM87_RS11645 () | 2423351..2423761 | - | 411 | Protein_2291 | IS5 family transposase ISEc61 | Transposase |
| EGM87_RS11650 () | 2424206..2424886 | + | 681 | WP_137710314.1 | phosphatase PAP2 family protein | - |
| EGM87_RS11655 () | 2424980..2426488 | + | 1509 | WP_137710313.1 | Inner membrane protein YebE | VF |
| EGM87_RS11660 () | 2426497..2428077 | + | 1581 | WP_137710312.1 | GtrA family protein | - |
| EGM87_RS11665 () | 2428506..2429807 | + | 1302 | WP_171010090.1 | hypothetical protein | - |
| EGM87_RS11670 () | 2429781..2430506 | - | 726 | WP_137710311.1 | class I SAM-dependent methyltransferase | - |
| EGM87_RS11675 () | 2430479..2431501 | - | 1023 | WP_137710310.1 | DNA polymerase III subunit theta | VF |
| EGM87_RS11680 () | 2431658..2433181 | + | 1524 | WP_137710309.1 | integral membrane-like protein | - |
| EGM87_RS11685 () | 2433457..2433681 | - | 225 | WP_007687413.1 | DUF2274 domain-containing protein | - |
| EGM87_RS11690 () | 2433691..2434953 | - | 1263 | WP_137710308.1 | TrbI/VirB10 family protein | - |
| EGM87_RS11695 () | 2434950..2435807 | - | 858 | WP_137710307.1 | P-type conjugative transfer protein TrbG | - |
| EGM87_RS11700 () | 2435804..2436580 | - | 777 | WP_137710306.1 | conjugal transfer protein TrbF | - |
| EGM87_RS11705 () | 2436582..2437877 | - | 1296 | WP_137710305.1 | P-type conjugative transfer protein TrbL | - |
| EGM87_RS11710 () | 2438004..2438753 | - | 750 | WP_137710304.1 | P-type conjugative transfer protein TrbJ | - |
| EGM87_RS11715 () | 2438755..2441205 | - | 2451 | WP_137710303.1 | conjugal transfer protein TrbE | - |
| EGM87_RS11720 () | 2441199..2441459 | - | 261 | WP_137710302.1 | VirB3 family type IV secretion system protein | - |
| EGM87_RS11725 () | 2441456..2441743 | - | 288 | WP_171010089.1 | TrbC/VirB2 family protein | - |
| EGM87_RS11730 () | 2441800..2442756 | - | 957 | WP_171010088.1 | RNA chaperone ProQ | VF |
| EGM87_RS11735 () | 2442819..2443235 | - | 417 | WP_048578000.1 | IS3 family transposase ISVa4 | Transposase |
| EGM87_RS11740 () | 2443232..2445253 | - | 2022 | WP_137710299.1 | Protease HtpX | VF |
| EGM87_RS11745 () | 2445398..2446303 | - | 906 | WP_171010075.1 | HEPN domain-containing protein | - |
| EGM87_RS11750 () | 2446485..2446753 | + | 269 | Protein_2312 | CopG family transcriptional regulator | - |
| EGM87_RS11755 () | 2446889..2448901 | - | 2013 | WP_137710297.1 | relaxase/mobilization nuclease and DUF3363 domain-containing protein | - |
| EGM87_RS11760 () | 2449281..2449427 | - | 147 | WP_171010074.1 | hypothetical protein | - |
| EGM87_RS11765 () | 2449700..2450389 | - | 690 | WP_137710296.1 | Cold shock-like protein CspC | VF |
| EGM87_RS11770 () | 2450483..2451121 | - | 639 | WP_137710295.1 | lytic transglycosylase domain-containing protein | - |
| EGM87_RS11775 () | 2451121..2451693 | - | 573 | WP_137710294.1 | S26 family signal peptidase | - |
| EGM87_RS11780 () | 2451690..2451947 | - | 258 | WP_137710293.1 | helix-turn-helix domain-containing protein | - |
| EGM87_RS11785 () | 2452122..2452442 | - | 321 | WP_066699763.1 | DUF736 domain-containing protein | - |
| EGM87_RS11790 () | 2453281..2453616 | - | 336 | WP_066699765.1 | endoribonuclease MazF | Toxin Detail |
| EGM87_RS11795 () | 2453616..2453858 | - | 243 | WP_013041112.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| EGM87_RS11800 () | 2453983..2454204 | - | 222 | WP_137710292.1 | hypothetical protein | - |
| EGM87_RS11805 () | 2454372..2456246 | - | 1875 | WP_137710291.1 | ParB N-terminal domain-containing protein | - |
| EGM87_RS11810 () | 2456363..2456764 | - | 402 | WP_137710290.1 | DUF2958 domain-containing protein | - |
| EGM87_RS11815 () | 2456761..2457819 | - | 1059 | WP_137710289.1 | DUF1738 domain-containing protein | - |
| EGM87_RS11820 () | 2458282..2458908 | - | 627 | WP_171010073.1 | DUF2285 domain-containing protein | - |
| EGM87_RS11825 () | 2459329..2460075 | + | 747 | WP_137710475.1 | LuxR family transcriptional regulator | - |
| EGM87_RS11830 () | 2460132..2460731 | + | 600 | WP_137710287.1 | autoinducer synthase | - |
| EGM87_RS11835 () | 2460706..2461614 | + | 909 | WP_137710286.1 | phytanoyl-CoA dioxygenase family protein | - |
| EGM87_RS11840 () | 2461675..2462226 | + | 552 | WP_171010072.1 | GntR family transcriptional regulator | - |
| EGM87_RS11845 () | 2462392..2462511 | + | 120 | WP_126516753.1 | benenodin family lasso peptide | - |
| EGM87_RS11850 () | 2462564..2463220 | + | 657 | WP_171010071.1 | lasso peptide biosynthesis B2 protein | - |
| EGM87_RS11855 () | 2463220..2464971 | + | 1752 | WP_137710283.1 | asparagine synthetase B family protein | - |
| EGM87_RS11860 () | 2464968..2467085 | - | 2118 | WP_137710282.1 | Atxe2 family lasso peptide isopeptidase | - |
| EGM87_RS11865 () | 2467079..2469649 | - | 2571 | WP_137710281.1 | Ribonuclease D | VF |
| EGM87_RS11870 () | 2469727..2470734 | - | 1008 | WP_137710280.1 | FecR domain-containing protein | - |
| EGM87_RS11875 () | 2470727..2471308 | - | 582 | WP_137710279.1 | sigma-70 family RNA polymerase sigma factor | - |
| EGM87_RS11880 () | 2472485..2473522 | + | 1038 | WP_137710474.1 | site-specific integrase | - |
| EGM87_RS11885 () | 2473723..2475105 | - | 1383 | WP_137710278.1 | methyltransferase domain-containing protein | - |
| EGM87_RS11890 () | 2475532..2476893 | + | 1362 | WP_137710277.1 | sulfotransferase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|