MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 94046 bp
Accession: NZ_CP053054 Location: 1..94046 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain CVM 28321-a Replicon: plasmid p28321a-2
Accession: NZ_CP053054 Location: 1..94046 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain CVM 28321-a Replicon: plasmid p28321a-2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HFS61_RS25105 () | 96..1088 | + | 993 | WP_000833320.1 | conjugal transfer pilus assembly protein TraU | - |
| HFS61_RS25110 () | 1107..1415 | + | 309 | WP_010999945.1 | hypothetical protein | - |
| HFS61_RS25115 () | 1400..2038 | + | 639 | WP_000554823.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| HFS61_RS25120 () | 2075..2494 | + | 420 | WP_001229397.1 | HNH endonuclease | - |
| HFS61_RS25125 () | 2491..4317 | + | 1827 | WP_000827528.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| HFS61_RS25130 () | 4328..4543 | + | 216 | WP_000700023.1 | conjugal transfer protein TrbE | - |
| HFS61_RS25135 () | 4555..5304 | + | 750 | WP_001226854.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| HFS61_RS25140 () | 5518..5811 | + | 294 | WP_001233881.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| HFS61_RS25145 () | 5798..6346 | + | 549 | WP_022743183.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| HFS61_RS25150 () | 6336..7718 | + | 1383 | WP_001161719.1 | conjugal transfer protein TraH | - |
| HFS61_RS25155 () | 7715..10537 | + | 2823 | WP_001007086.1 | conjugal transfer mating pair stabilization protein TraG | - |
| HFS61_RS25160 () | 10553..11047 | + | 495 | WP_010999946.1 | entry exclusion protein | - |
| HFS61_RS25165 () | 11083..11814 | + | 732 | WP_022743186.1 | complement resistance protein TraT | - |
| HFS61_RS25170 () | 12191..14452 | + | 2262 | WP_022743189.1 | type IV conjugative transfer system coupling protein TraD | - |
| HFS61_RS25175 () | 14461..14859 | - | 399 | WP_000911322.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| HFS61_RS25180 () | 14859..15086 | - | 228 | WP_000450265.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| HFS61_RS25185 () | 15168..20426 | + | 5259 | WP_022743192.1 | conjugative transfer relaxase/helicase TraI | - |
| HFS61_RS25190 () | 20446..21186 | + | 741 | WP_000177629.1 | conjugal transfer pilus acetylase TraX | - |
| HFS61_RS25195 () | 21241..21804 | + | 564 | WP_000139307.1 | fertility inhibition protein FinO | - |
| HFS61_RS25200 () | 21919..22203 | + | 285 | WP_000477658.1 | hypothetical protein | - |
| HFS61_RS25205 () | 22216..22371 | + | 156 | WP_000983042.1 | hypothetical protein | - |
| HFS61_RS25210 () | 22537..22979 | + | 443 | Protein_22 | phospholipase | - |
| HFS61_RS25215 () | 23158..23424 | + | 267 | WP_010999936.1 | replication regulatory protein RepA | - |
| HFS61_RS25220 () | 23674..23751 | + | 78 | WP_001541552.1 | RepA leader peptide Tap | - |
| HFS61_RS25225 () | 23732..24613 | + | 882 | WP_001738692.1 | incFII family plasmid replication initiator RepA | - |
| HFS61_RS25230 () | 25473..25694 | + | 222 | WP_071533052.1 | SdiA-regulated domain-containing protein | - |
| HFS61_RS25235 () | 25791..26549 | - | 759 | WP_000417898.1 | AraC family transcriptional regulator | - |
| HFS61_RS25240 () | 26816..27373 | - | 558 | WP_000725062.1 | complement resistance protein Rck | - |
| HFS61_RS25245 () | 27463..28362 | - | 900 | WP_010999938.1 | YjiK family protein | - |
| HFS61_RS25250 () | 28359..28505 | - | 147 | WP_001192557.1 | hypothetical protein | - |
| HFS61_RS25255 () | 28495..29148 | - | 654 | WP_000178592.1 | DsbA family protein | - |
| HFS61_RS25260 () | 29393..29743 | - | 351 | WP_001526811.1 | helix-turn-helix transcriptional regulator | - |
| HFS61_RS25265 () | 29728..29940 | - | 213 | WP_000004313.1 | transcriptional regulator PefI | - |
| HFS61_RS25270 () | 30372..31247 | - | 876 | WP_014343944.1 | hypothetical protein | - |
| HFS61_RS25275 () | 31500..32057 | - | 558 | WP_010999940.1 | membrane protein | - |
| HFS61_RS25280 () | 32072..32764 | - | 693 | WP_001038510.1 | fimbrial chaperone PefD | - |
| HFS61_RS25285 () | 32757..35165 | - | 2409 | WP_000007893.1 | outer membrane usher protein PefC | - |
| HFS61_RS25290 () | 35393..35911 | - | 519 | WP_000748205.1 | major pilin PefA | - |
| HFS61_RS25295 () | 36186..36488 | - | 303 | WP_000979451.1 | transcriptional regulator PefB | - |
| HFS61_RS25300 () | 37207..37588 | + | 382 | Protein_40 | YgiW/YdeI family stress tolerance OB fold protein | - |
| HFS61_RS25305 () | 37757..38201 | + | 445 | Protein_41 | site-specific integrase | - |
| HFS61_RS25310 () | 38460..39449 | - | 990 | WP_001527061.1 | RepB family plasmid replication initiator protein | - |
| HFS61_RS25315 () | 39943..40239 | - | 297 | WP_001687482.1 | hypothetical protein | - |
| HFS61_RS25320 () | 40723..41244 | - | 522 | WP_010999942.1 | hypothetical protein | - |
| HFS61_RS25325 () | 41920..42138 | + | 219 | WP_000813641.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| HFS61_RS25330 () | 42140..42445 | + | 306 | WP_001159863.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| HFS61_RS25335 () | 42447..42737 | + | 291 | WP_001266176.1 | hypothetical protein | - |
| HFS61_RS25340 () | 42734..43255 | + | 522 | WP_000198608.1 | hypothetical protein | - |
| HFS61_RS25345 () | 43290..44072 | + | 783 | WP_000082169.1 | site-specific integrase | - |
| HFS61_RS25350 () | 44081..44794 | + | 714 | Protein_50 | EAL domain-containing protein | - |
| HFS61_RS25355 () | 44798..45307 | + | 510 | WP_001541544.1 | CaiF/GrlA family transcriptional regulator | - |
| HFS61_RS25360 () | 45301..45786 | + | 486 | WP_000905606.1 | membrane protein | - |
| HFS61_RS25365 () | 46063..46350 | - | 288 | WP_071530243.1 | hypothetical protein | - |
| HFS61_RS25370 () | 46506..47066 | + | 561 | WP_000900095.1 | inverse autotransporter beta domain-containing protein | - |
| HFS61_RS25375 () | 47133..47483 | - | 351 | WP_001541541.1 | helix-turn-helix domain-containing protein | - |
| HFS61_RS25380 () | 47540..47964 | + | 425 | Protein_56 | IS200/IS605 family transposase | - |
| HFS61_RS25385 () | 48091..48741 | - | 651 | WP_001575489.1 | SPI-2 type III secretion system effector cysteine hydrolase SpvD | - |
| HFS61_RS25390 () | 49002..49727 | - | 726 | WP_001122242.1 | type III secretion system effector phosphothreonine lyase SpvC | - |
| HFS61_RS25395 () | 50008..51783 | - | 1776 | WP_001676648.1 | SPI-2 type III secretion system effector NAD(+)--protein-arginine ADP-ribosyltransferase SpvB | - |
| HFS61_RS25400 () | 51835..52002 | - | 168 | WP_001526987.1 | hypothetical protein | - |
| HFS61_RS25405 () | 51965..52732 | - | 768 | WP_001526990.1 | virulence protein SpvA | - |
| HFS61_RS25410 () | 52906..53070 | - | 165 | WP_001576629.1 | glycoside hydrolase family protein | - |
| HFS61_RS25415 () | 53244..54137 | - | 894 | WP_000346691.1 | virulence genes transcriptional activator SpvR | - |
| HFS61_RS25420 () | 54746..55783 | + | 1038 | WP_001121399.1 | IS630 family transposase | - |
| HFS61_RS25425 () | 55972..56997 | - | 1026 | WP_001576625.1 | ExeA family protein | - |
| HFS61_RS25430 () | 56930..58594 | - | 1665 | WP_000098783.1 | IS481 family transposase | - |
| HFS61_RS25435 () | 58578..59138 | - | 561 | WP_001240331.1 | recombinase family protein | - |
| HFS61_RS25440 () | 59345..60085 | - | 741 | WP_001541566.1 | carbonic anhydrase | - |
| HFS61_RS25445 () | 60740..61228 | - | 489 | WP_001135407.1 | hypothetical protein | - |
| HFS61_RS25450 () | 61487..62602 | + | 1116 | WP_001247118.1 | DNA-binding protein | - |
| HFS61_RS25455 () | 62688..63104 | + | 417 | WP_001541564.1 | hypothetical protein | - |
| HFS61_RS25460 () | 63288..63623 | + | 336 | WP_001527010.1 | hypothetical protein | - |
| HFS61_RS25465 () | 63680..64246 | + | 567 | WP_001541562.1 | DUF2913 family protein | - |
| HFS61_RS25470 () | 64278..65219 | - | 942 | WP_000728917.1 | Rpn family recombination-promoting nuclease/putative transposase | - |
| HFS61_RS25475 () | 65634..66839 | + | 1206 | WP_000427676.1 | AAA family ATPase | - |
| HFS61_RS25480 () | 66839..67813 | + | 975 | WP_000064274.1 | ParB/RepB/Spo0J family partition protein | - |
| HFS61_RS25485 () | 67895..69169 | - | 1275 | WP_022743179.1 | Y-family DNA polymerase | - |
| HFS61_RS25490 () | 69169..69591 | - | 423 | WP_000925627.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| HFS61_RS25495 () | 70102..70572 | + | 471 | WP_000490265.1 | hypothetical protein | - |
| HFS61_RS25500 () | 70565..70921 | + | 357 | WP_000369839.1 | hypothetical protein | - |
| HFS61_RS25505 () | 71303..71983 | + | 681 | WP_000088645.1 | DNA methylase | - |
| HFS61_RS25510 () | 71983..72204 | + | 222 | WP_001109588.1 | hypothetical protein | - |
| HFS61_RS25515 () | 72260..72673 | + | 414 | WP_000990114.1 | DUF1380 family protein | - |
| HFS61_RS25520 () | 72745..73509 | + | 765 | WP_001246548.1 | membrane protein | - |
| HFS61_RS25525 () | 74005..74439 | + | 435 | WP_001200150.1 | antirestriction protein | - |
| HFS61_RS25530 () | 74506..74940 | + | 435 | WP_000274533.1 | DUF1380 family protein | - |
| HFS61_RS25535 () | 75176..75499 | + | 324 | WP_000015983.1 | DNA polymerase III subunit theta | - |
| HFS61_RS25540 () | 75463..75720 | + | 258 | WP_126834987.1 | hypothetical protein | - |
| HFS61_RS25545 () | 76314..76832 | + | 519 | WP_000741240.1 | single-stranded DNA-binding protein SSB2 | - |
| HFS61_RS25550 () | 76887..77129 | + | 243 | WP_000131520.1 | DUF905 domain-containing protein | - |
| HFS61_RS25555 () | 77198..79195 | + | 1998 | WP_000117513.1 | ParB/RepB/Spo0J family partition protein | - |
| HFS61_RS25560 () | 79235..79669 | + | 435 | WP_010999943.1 | conjugation system SOS inhibitor PsiB | - |
| HFS61_RS25565 () | 79666..80403 | + | 738 | WP_000581933.1 | plasmid SOS inhibition protein A | - |
| HFS61_RS25570 () | 80652..80810 | + | 159 | WP_001704449.1 | hypothetical protein | - |
| HFS61_RS25575 () | 80913..81731 | + | 819 | Protein_95 | DUF945 domain-containing protein | - |
| HFS61_RS25580 () | 82042..82512 | - | 471 | WP_001526856.1 | transglycosylase SLT domain-containing protein | - |
| HFS61_RS25585 () | 82927..83307 | + | 381 | WP_001151546.1 | relaxosome protein TraM | - |
| HFS61_RS25590 () | 83500..84186 | + | 687 | WP_000336297.1 | PAS domain-containing protein | - |
| HFS61_RS25595 () | 84281..84508 | + | 228 | WP_001676655.1 | conjugal transfer relaxosome protein TraY | - |
| HFS61_RS25600 () | 84550..84912 | + | 363 | WP_001274201.1 | type IV conjugative transfer system pilin TraA | - |
| HFS61_RS25605 () | 84927..85238 | + | 312 | WP_000012129.1 | type IV conjugative transfer system protein TraL | - |
| HFS61_RS25610 () | 85260..85826 | + | 567 | WP_000399768.1 | type IV conjugative transfer system protein TraE | - |
| HFS61_RS25615 () | 85813..86553 | + | 741 | WP_001230719.1 | type-F conjugative transfer system secretin TraK | - |
| HFS61_RS25620 () | 86553..87974 | + | 1422 | WP_000146700.1 | conjugal transfer protein TraB | - |
| HFS61_RS25625 () | 87964..88560 | + | 597 | WP_000527896.1 | conjugal transfer protein TraP | - |
| HFS61_RS25630 () | 88538..88783 | + | 246 | WP_010999944.1 | DUF2689 domain-containing protein | - |
| HFS61_RS25635 () | 88780..89295 | + | 516 | WP_001079995.1 | type IV conjugative transfer system lipoprotein TraV | - |
| HFS61_RS25640 () | 89430..89651 | + | 222 | WP_001278699.1 | conjugal transfer protein TraR | - |
| HFS61_RS25645 () | 89644..90111 | + | 468 | WP_000549562.1 | hypothetical protein | - |
| HFS61_RS25650 () | 90228..90491 | + | 264 | WP_001239256.1 | hypothetical protein | - |
| HFS61_RS25655 () | 90507..93155 | + | 2649 | WP_000793310.1 | type IV secretion system protein TraC | - |
| HFS61_RS25660 () | 93130..93516 | + | 387 | WP_000105164.1 | type-F conjugative transfer system protein TrbI | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|