MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 57270 bp
Accession: NZ_CP053024 Location: 1..57270 Organism: Sphingobium yanoikuyae strain YC-XJ2 Replicon: plasmid p-C-Sy
Accession: NZ_CP053024 Location: 1..57270 Organism: Sphingobium yanoikuyae strain YC-XJ2 Replicon: plasmid p-C-Sy
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HH800_RS28585 () | 1738..2362 | - | 625 | Protein_2 | histidine phosphatase family protein | - |
| HH800_RS28590 () | 2372..2668 | - | 297 | WP_169863562.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| HH800_RS28595 () | 2665..2946 | - | 282 | WP_169863595.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| HH800_RS28600 () | 3265..3450 | - | 186 | WP_159368306.1 | helix-turn-helix domain-containing protein | - |
| HH800_RS28605 () | 3479..3901 | - | 423 | WP_169863563.1 | XRE family transcriptional regulator | - |
| HH800_RS28610 () | 4207..5310 | - | 1104 | WP_015063481.1 | IS110 family transposase ISSfr2 | Transposase |
| HH800_RS28615 () | 5512..6348 | + | 837 | WP_159367005.1 | IS5 family transposase IS1031D | Transposase |
| HH800_RS28620 () | 7076..8110 | - | 1035 | WP_010338606.1 | IS110 family transposase ISCc4 | Transposase |
| HH800_RS28625 () | 8432..9067 | + | 636 | WP_159368296.1 | Sporulation initiation inhibitor protein Soj | VF |
| HH800_RS28630 () | 9093..9374 | + | 282 | WP_169863564.1 | hypothetical protein | - |
| HH800_RS28635 () | 9431..10342 | - | 912 | WP_159368298.1 | replication initiation protein | - |
| HH800_RS28640 () | 11266..12935 | - | 1670 | Protein_13 | type IV secretory system conjugative DNA transfer family protein | - |
| HH800_RS28645 () | 12938..13201 | - | 264 | WP_169863565.1 | hypothetical protein | - |
| HH800_RS28650 () | 13194..13747 | - | 554 | Protein_15 | AAA family ATPase | - |
| HH800_RS28655 () | 13740..13970 | - | 231 | WP_159368307.1 | conjugal transfer protein TraD | - |
| HH800_RS28660 () | 14065..14313 | - | 249 | WP_159368301.1 | conjugal transfer protein TraD | - |
| HH800_RS28665 () | 14487..17642 | + | 3156 | WP_169863566.1 | Mobilization protein A | Relaxase |
| HH800_RS28670 () | 17705..17950 | + | 246 | WP_169863567.1 | ribbon-helix-helix domain-containing protein | - |
| HH800_RS28675 () | 17954..18388 | + | 435 | WP_169863568.1 | putative toxin-antitoxin system toxin component, PIN family | - |
| HH800_RS28680 () | 18385..18795 | + | 411 | Protein_21 | hypothetical protein | - |
| HH800_RS28685 () | 19120..20223 | - | 1104 | WP_015063481.1 | IS110 family transposase ISSfr2 | Transposase |
| HH800_RS28690 () | 20307..23186 | - | 2880 | Protein_23 | Tn3 family transposase TnpA_ISRsp12 | Transposase |
| HH800_RS28695 () | 23312..23932 | + | 621 | WP_008832583.1 | Tn3 family transposase TnpR_ISMex22 | Transposase |
| HH800_RS28700 () | 23929..24459 | + | 531 | WP_007686150.1 | GNAT family N-acetyltransferase | - |
| HH800_RS28705 () | 24524..24838 | + | 315 | Protein_26 | hypothetical protein | - |
| HH800_RS28710 () | 24867..25124 | - | 258 | Protein_27 | DUF2442 domain-containing protein | - |
| HH800_RS28715 () | 25173..25349 | - | 177 | Protein_28 | cytoplasmic protein | - |
| HH800_RS28720 () | 25374..25667 | - | 294 | WP_169863569.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| HH800_RS28725 () | 25660..25938 | - | 279 | WP_159368254.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| HH800_RS28730 () | 26071..26199 | + | 129 | WP_169863570.1 | hypothetical protein | - |
| HH800_RS28735 () | 26186..26416 | + | 231 | WP_169863571.1 | BrnA antitoxin family protein | - |
| HH800_RS28740 () | 26448..26775 | + | 328 | Protein_33 | hypothetical protein | - |
| HH800_RS28745 () | 26818..27210 | - | 393 | Protein_34 | IS66 family insertion sequence element accessory protein TnpB | - |
| HH800_RS28750 () | 27112..28485 | + | 1374 | WP_169863572.1 | hypothetical protein | - |
| HH800_RS28755 () | 28599..28778 | - | 180 | WP_169863561.1 | hypothetical protein | - |
| HH800_RS28760 () | 28922..29203 | + | 282 | WP_169863573.1 | WGR domain-containing protein | - |
| HH800_RS28765 () | 29331..29624 | - | 294 | WP_169863574.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| HH800_RS28770 () | 29612..29890 | - | 279 | WP_059153569.1 | CopG family ribbon-helix-helix protein | Antitoxin Detail |
| HH800_RS28775 () | 30282..30842 | + | 561 | WP_169863596.1 | Tn3 family transposase TnpR_TnAs3 | Transposase |
| HH800_RS28780 () | 30857..32194 | + | 1338 | WP_169863575.1 | phosphoglucosamine mutase | - |
| HH800_RS28785 () | 32227..32535 | - | 309 | WP_169863576.1 | hypothetical protein | - |
| HH800_RS28790 () | 32532..33788 | - | 1257 | WP_169863577.1 | hypothetical protein | - |
| HH800_RS28795 () | 33788..35992 | - | 2205 | WP_169863578.1 | Tyrosine-protein kinase ptk | VF |
| HH800_RS28800 () | 36006..36716 | - | 711 | WP_169863597.1 | hypothetical protein | VF |
| HH800_RS28805 () | 36769..38139 | - | 1371 | WP_169863579.1 | O-antigen ligase family protein | - |
| HH800_RS28810 () | 38140..39384 | - | 1245 | WP_169863580.1 | dTDP-3-amino-3,4,6-trideoxy-alpha-D-glucose transaminase | VF |
| HH800_RS28815 () | 39386..40018 | - | 633 | WP_169863581.1 | acetyltransferase | - |
| HH800_RS28820 () | 40015..40614 | - | 600 | WP_169863582.1 | putative sugar transferase EpsL | VF |
| HH800_RS28825 () | 40684..41802 | - | 1119 | WP_169863583.1 | glycosyltransferase family 4 protein | - |
| HH800_RS28830 () | 41841..42971 | - | 1131 | WP_169863584.1 | glycosyltransferase | - |
| HH800_RS28835 () | 43014..44192 | - | 1179 | WP_169863585.1 | hypothetical protein | - |
| HH800_RS28840 () | 44346..45461 | - | 1116 | WP_169863586.1 | glycosyltransferase | - |
| HH800_RS28845 () | 45454..46767 | - | 1314 | WP_169863587.1 | oligosaccharide flippase family protein | - |
| HH800_RS28850 () | 46771..48069 | - | 1299 | WP_169863588.1 | UDP-N-acetyl-D-glucosamine 6-dehydrogenase | VF |
| HH800_RS28855 () | 48071..49105 | - | 1035 | WP_169863589.1 | UDP-glucose 4-epimerase | VF |
| HH800_RS28860 () | 49143..51041 | - | 1899 | WP_169863598.1 | UDP-N-acetyl-alpha-D-glucosamine C6 dehydratase | VF |
| HH800_RS28865 () | 51170..52993 | - | 1824 | WP_169863590.1 | glutamine--fructose-6-phosphate transaminase (isomerizing) | - |
| HH800_RS28870 () | 53058..53378 | - | 321 | WP_169863591.1 | hypothetical protein | - |
| HH800_RS28875 () | 53989..54240 | - | 252 | WP_169863592.1 | hypothetical protein | - |
| HH800_RS28880 () | 54332..55129 | - | 798 | WP_169863599.1 | serine/threonine protein phosphatase | - |
| HH800_RS28885 () | 55200..56222 | + | 1023 | WP_169863593.1 | peptidase M48 family protein | - |
| HH800_RS28890 () | 56258..56431 | - | 174 | WP_169863594.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|