MGE detailed information
MGE type: Genomic_island MGE length: 92864 bp
Accession: NZ_CP053021 Location: 1612450..1705313 Organism: Sphingobium yanoikuyae strain YC-XJ2 Replicon: chromosome
Accession: NZ_CP053021 Location: 1612450..1705313 Organism: Sphingobium yanoikuyae strain YC-XJ2 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HH800_RS08125 () | 1608317..1609093 | - | 777 | WP_159365847.1 | type-F conjugative transfer system secretin TraK | - |
| HH800_RS08130 () | 1609077..1609712 | - | 636 | WP_159365848.1 | conjugal transfer protein | - |
| HH800_RS08135 () | 1609718..1609984 | - | 267 | WP_008827576.1 | membrane protein | - |
| HH800_RS08140 () | 1610117..1610431 | - | 315 | WP_029547519.1 | hypothetical protein | - |
| HH800_RS08145 () | 1610628..1611443 | - | 816 | WP_159365850.1 | DsbC family protein | - |
| HH800_RS08150 () | 1611415..1611717 | + | 303 | WP_169859719.1 | hypothetical protein | - |
| HH800_RS08155 () | 1611886..1612308 | + | 423 | WP_159365851.1 | hypothetical protein | - |
| HH800_RS08160 () | 1612450..1612860 | + | 411 | WP_159365852.1 | helix-turn-helix domain-containing protein | - |
| HH800_RS08165 () | 1612867..1613496 | + | 630 | WP_159367927.1 | GntR family transcriptional regulator | - |
| HH800_RS08170 () | 1613663..1613797 | + | 135 | WP_146037182.1 | benenodin family lasso peptide | - |
| HH800_RS08175 () | 1613856..1614530 | + | 675 | WP_169860747.1 | lasso peptide biosynthesis B2 protein | - |
| HH800_RS08180 () | 1614527..1616209 | + | 1683 | WP_159365854.1 | asparagine synthetase B family protein | - |
| HH800_RS08185 () | 1616221..1618251 | - | 2031 | WP_159365855.1 | Atxe2 family lasso peptide isopeptidase | - |
| HH800_RS08190 () | 1618296..1620857 | - | 2562 | WP_169863272.1 | TonB-dependent receptor | - |
| HH800_RS08195 () | 1620943..1621980 | - | 1038 | WP_159365857.1 | FecR domain-containing protein | - |
| HH800_RS08200 () | 1621977..1622528 | - | 552 | WP_159367928.1 | RNA polymerase sigma factor | - |
| HH800_RS08205 () | 1623103..1623447 | - | 345 | WP_159365858.1 | MarR family transcriptional regulator | - |
| HH800_RS08210 () | 1623453..1624364 | - | 912 | WP_159365859.1 | phytanoyl-CoA dioxygenase family protein | - |
| HH800_RS08215 () | 1624377..1625003 | - | 627 | WP_159365860.1 | hypothetical protein | VF |
| HH800_RS08220 () | 1625091..1625846 | - | 756 | WP_159365861.1 | LuxR family transcriptional regulator | - |
| HH800_RS08225 () | 1626020..1626298 | + | 279 | WP_159365862.1 | hypothetical protein | - |
| HH800_RS08230 () | 1626436..1627068 | - | 633 | WP_159365863.1 | DNA repair protein RadC | - |
| HH800_RS08235 () | 1627011..1627451 | - | 441 | WP_159367929.1 | hypothetical protein | - |
| HH800_RS08240 () | 1627502..1627846 | - | 345 | WP_159365864.1 | hypothetical protein | - |
| HH800_RS08245 () | 1627747..1628454 | - | 708 | WP_169860748.1 | hypothetical protein | - |
| HH800_RS08250 () | 1628897..1629775 | + | 879 | WP_169860749.1 | toprim domain-containing protein | - |
| HH800_RS08255 () | 1629833..1630108 | - | 276 | WP_159365866.1 | HU family DNA-binding protein | - |
| HH800_RS08260 () | 1630262..1632292 | + | 2031 | WP_159365867.1 | ParB/RepB/Spo0J family partition protein | - |
| HH800_RS08265 () | 1632335..1633000 | - | 666 | WP_159365868.1 | UPF0149 family protein | - |
| HH800_RS08270 () | 1633113..1637408 | + | 4296 | WP_159365869.1 | strawberry notch family protein | - |
| HH800_RS08275 () | 1637505..1638575 | - | 1071 | WP_159365870.1 | MucR family transcriptional regulator | - |
| HH800_RS08280 () | 1638768..1639253 | + | 486 | WP_169860750.1 | hypothetical protein | - |
| HH800_RS08285 () | 1639246..1639860 | + | 615 | WP_169860751.1 | hypothetical protein | - |
| HH800_RS08290 () | 1639958..1640656 | + | 699 | WP_159365873.1 | hypothetical protein | - |
| HH800_RS08295 () | 1640660..1641505 | + | 846 | WP_169860752.1 | N-6 DNA methylase | - |
| HH800_RS08300 () | 1641487..1643244 | - | 1758 | WP_159365875.1 | ABC transporter ATP-binding protein/permease | - |
| HH800_RS08305 () | 1643449..1644645 | + | 1197 | WP_159365876.1 | DUF932 domain-containing protein | - |
| HH800_RS08310 () | 1644730..1644945 | + | 216 | WP_159365877.1 | hypothetical protein | - |
| HH800_RS08315 () | 1644990..1646684 | + | 1695 | WP_159367930.1 | PRTRC system ParB family protein | - |
| HH800_RS08320 () | 1646719..1647144 | + | 426 | WP_159365878.1 | PRTRC system protein E | - |
| HH800_RS08325 () | 1647199..1647405 | + | 207 | WP_159365879.1 | hypothetical protein | - |
| HH800_RS08330 () | 1647417..1647644 | + | 228 | WP_169860753.1 | hypothetical protein | - |
| HH800_RS08335 () | 1647748..1648605 | + | 858 | Protein_1637 | hypothetical protein | - |
| HH800_RS08340 () | 1648617..1649447 | + | 831 | WP_159365880.1 | PRTRC system protein B | - |
| HH800_RS08345 () | 1649444..1650103 | + | 660 | WP_159365881.1 | PRTRC system protein A | - |
| HH800_RS08350 () | 1650093..1650896 | + | 804 | WP_159365882.1 | PRTRC system ThiF family protein | - |
| HH800_RS08355 () | 1650932..1651165 | + | 234 | WP_010338822.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| HH800_RS08360 () | 1651169..1651570 | + | 402 | WP_048938827.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| HH800_RS08365 () | 1651762..1653132 | + | 1371 | WP_159365883.1 | hypothetical protein | - |
| HH800_RS08370 () | 1653663..1654748 | + | 1086 | WP_159365884.1 | DUF4297 domain-containing protein | - |
| HH800_RS08375 () | 1654806..1656494 | + | 1689 | WP_169860754.1 | hypothetical protein | - |
| HH800_RS08380 () | 1657127..1657588 | + | 462 | WP_159365886.1 | hypothetical protein | - |
| HH800_RS08385 () | 1657605..1658687 | + | 1083 | WP_169860755.1 | hypothetical protein | - |
| HH800_RS08390 () | 1658780..1658944 | - | 165 | WP_169860756.1 | hypothetical protein | - |
| HH800_RS08395 () | 1659080..1660765 | + | 1686 | WP_159365888.1 | ATP-binding protein | - |
| HH800_RS08400 () | 1660842..1662044 | + | 1203 | WP_159365889.1 | DUF87 domain-containing protein | - |
| HH800_RS08405 () | 1662057..1663355 | + | 1299 | WP_169860757.1 | hypothetical protein | - |
| HH800_RS08410 () | 1663387..1663593 | + | 207 | WP_103094823.1 | hypothetical protein | - |
| HH800_RS08415 () | 1663590..1664513 | + | 924 | WP_201450263.1 | hypothetical protein | - |
| HH800_RS08420 () | 1664608..1666776 | - | 2169 | WP_159365891.1 | prolyl oligopeptidase family serine peptidase | - |
| HH800_RS08425 () | 1667490..1667957 | + | 468 | WP_086493719.1 | DUF736 domain-containing protein | - |
| HH800_RS08430 () | 1668041..1668322 | + | 282 | WP_159365892.1 | hypothetical protein | - |
| HH800_RS08435 () | 1668409..1669419 | + | 1011 | WP_159365893.1 | DUF2493 domain-containing protein | - |
| HH800_RS08440 () | 1669822..1670805 | + | 984 | WP_159365894.1 | DUF2493 domain-containing protein | - |
| HH800_RS08445 () | 1671086..1671607 | + | 522 | WP_159365895.1 | hypothetical protein | - |
| HH800_RS08450 () | 1671608..1671835 | - | 228 | WP_159367932.1 | hypothetical protein | - |
| HH800_RS08455 () | 1672050..1672397 | + | 348 | WP_159365896.1 | hypothetical protein | - |
| HH800_RS08460 () | 1672507..1673538 | + | 1032 | WP_020818605.1 | IS110 family transposase ISMmg1 | Transposase |
| HH800_RS08465 () | 1674561..1675693 | + | 1133 | WP_155276551.1 | IS3 family transposase ISKpn11 | Transposase |
| HH800_RS08470 () | 1675805..1676800 | - | 996 | WP_169860758.1 | IS110 family transposase ISMno14 | Transposase |
| HH800_RS08475 () | 1677054..1677705 | - | 652 | Protein_1665 | IS5 family transposase IS1031D | Transposase |
| HH800_RS08480 () | 1677739..1678266 | - | 528 | WP_206379200.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| HH800_RS08485 () | 1678836..1680722 | + | 1887 | WP_066856538.1 | PAS domain S-box protein | - |
| HH800_RS08490 () | 1680712..1681335 | + | 624 | WP_010335976.1 | Chemotaxis response regulator protein-glutamate methylesterase | VF |
| HH800_RS08495 () | 1681665..1682090 | + | 426 | WP_010335975.1 | organic hydroperoxide resistance protein | - |
| HH800_RS08500 () | 1682093..1682566 | + | 474 | WP_198162819.1 | MarR family transcriptional regulator | - |
| HH800_RS08505 () | 1682776..1683201 | + | 426 | WP_100206925.1 | Regulator of RpoS | VF |
| HH800_RS08510 () | 1683313..1684914 | + | 1602 | WP_010335972.1 | MBL fold metallo-hydrolase | - |
| HH800_RS08515 () | 1685215..1685418 | + | 204 | WP_157102437.1 | hypothetical protein | - |
| HH800_RS08520 () | 1685448..1685969 | - | 522 | WP_010335971.1 | GNAT family N-acetyltransferase | - |
| HH800_RS08525 () | 1686383..1687813 | - | 1431 | WP_169863273.1 | cardiolipin synthase | - |
| HH800_RS08530 () | 1688121..1688348 | + | 228 | WP_010335674.1 | hypothetical protein | - |
| HH800_RS08535 () | 1688439..1688825 | + | 387 | WP_066856547.1 | hypothetical protein | VF |
| HH800_RS08540 () | 1688904..1689722 | + | 819 | WP_010335676.1 | universal stress protein | - |
| HH800_RS08545 () | 1689834..1690910 | - | 1077 | WP_010335677.1 | NAD(P)-dependent alcohol dehydrogenase | - |
| HH800_RS08550 () | 1691176..1693854 | + | 2679 | WP_169860759.1 | HAD-IC family P-type ATPase | - |
| HH800_RS08555 () | 1693896..1694789 | + | 894 | WP_029547405.1 | universal stress protein | - |
| HH800_RS08560 () | 1695728..1698094 | + | 2367 | WP_084438969.1 | heavy metal translocating P-type ATPase | - |
| HH800_RS08565 () | 1698091..1698480 | + | 390 | WP_169860760.1 | Cu(I)-responsive transcriptional regulator | - |
| HH800_RS08570 () | 1699354..1699539 | + | 186 | WP_010335682.1 | hypothetical protein | - |
| HH800_RS08575 () | 1699800..1701434 | - | 1635 | WP_066856570.1 | Na+/H+ antiporter | - |
| HH800_RS08580 () | 1701602..1702801 | - | 1200 | WP_100206981.1 | sodium/glutamate symporter | - |
| HH800_RS08585 () | 1702958..1703596 | - | 639 | WP_080572854.1 | membrane integrity-associated transporter subunit PqiC | - |
| HH800_RS08590 () | 1703593..1704528 | - | 936 | WP_010338709.1 | MCE family protein | - |
| HH800_RS08595 () | 1704528..1705313 | - | 786 | WP_010338710.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| HH800_RS08600 () | 1705310..1706221 | - | 912 | WP_100206982.1 | ABC transporter permease | - |
| HH800_RS08605 () | 1706431..1706823 | - | 393 | WP_010338712.1 | hypothetical protein | - |
| HH800_RS08610 () | 1706820..1708043 | - | 1224 | WP_066856573.1 | phospholipase A | - |
| HH800_RS08615 () | 1708040..1708813 | - | 774 | WP_169860761.1 | enoyl-ACP reductase FabI | - |
| HH800_RS08620 () | 1708810..1710000 | - | 1191 | WP_169860762.1 | acetate/propionate family kinase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|