MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 61057 bp
Accession: NZ_CP053014 Location: 2029767..2090823 Organism: Dickeya zeae strain MS_2018 Replicon: chromosome
Accession: NZ_CP053014 Location: 2029767..2090823 Organism: Dickeya zeae strain MS_2018 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HJ586_RS09120 (HJ586_09135) | 2025119..2026192 | + | 1074 | WP_038913617.1 | LacI family DNA-binding transcriptional regulator | - |
| HJ586_RS09125 (HJ586_09140) | 2026383..2029493 | + | 3111 | WP_236306598.1 | beta-galactosidase | - |
| HJ586_RS09135 (HJ586_09150) | 2029944..2031227 | + | 1284 | WP_236306599.1 | hypothetical protein ; Integrase | Integrase |
| HJ586_RS09140 (HJ586_09155) | 2031297..2031608 | - | 312 | WP_019845671.1 | DUF736 domain-containing protein | - |
| HJ586_RS09145 (HJ586_09160) | 2032628..2033554 | + | 927 | WP_236306601.1 | hypothetical protein | - |
| HJ586_RS09150 (HJ586_09165) | 2033837..2034394 | - | 558 | WP_236306602.1 | hypothetical protein | - |
| HJ586_RS09155 (HJ586_09170) | 2034391..2038710 | - | 4320 | WP_236306603.1 | RHS repeat-associated core domain-containing protein | - |
| HJ586_RS09160 (HJ586_09175) | 2038722..2039129 | - | 408 | WP_236306605.1 | DUF1795 domain-containing protein | - |
| HJ586_RS09165 (HJ586_09180) | 2039143..2040996 | - | 1854 | WP_236306607.1 | hypothetical protein | VF |
| HJ586_RS09170 (HJ586_09185) | 2041109..2041627 | - | 519 | WP_012768188.1 | hypothetical protein | VF |
| HJ586_RS09175 (HJ586_09190) | 2042332..2042601 | - | 270 | WP_236306608.1 | helix-turn-helix transcriptional regulator | - |
| HJ586_RS09180 (HJ586_09195) | 2042735..2043007 | + | 273 | WP_219951486.1 | hypothetical protein | VF |
| HJ586_RS09185 (HJ586_09200) | 2043125..2043382 | + | 258 | WP_012769229.1 | helix-turn-helix transcriptional regulator | - |
| HJ586_RS09190 (HJ586_09205) | 2043878..2044072 | + | 195 | WP_012769228.1 | AlpA family transcriptional regulator | - |
| HJ586_RS09195 (HJ586_09210) | 2044089..2044673 | + | 585 | WP_236306610.1 | DUF2857 domain-containing protein | - |
| HJ586_RS09200 (HJ586_09215) | 2044663..2044872 | + | 210 | WP_236306612.1 | TraR/DksA family transcriptional regulator | - |
| HJ586_RS09205 (HJ586_09220) | 2045302..2046554 | + | 1253 | Protein_1800 | IS110 family transposase ISCps4 | Transposase |
| HJ586_RS09210 (HJ586_09225) | 2046835..2047713 | - | 879 | WP_236306613.1 | LysR family transcriptional regulator | - |
| HJ586_RS09215 (HJ586_09230) | 2047818..2048405 | + | 588 | WP_236306614.1 | cysteine/O-acetylserine transporter | - |
| HJ586_RS09220 (HJ586_09235) | 2048505..2049515 | - | 1011 | WP_236306616.1 | aldo/keto reductase | - |
| HJ586_RS09225 (HJ586_09240) | 2049626..2050027 | - | 402 | WP_236306617.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| HJ586_RS09230 (HJ586_09245) | 2050269..2051657 | + | 1389 | WP_236306619.1 | hypothetical protein | VF |
| HJ586_RS09235 (HJ586_09250) | 2051802..2053013 | - | 1212 | WP_236306620.1 | chromate efflux transporter | - |
| HJ586_RS09240 (HJ586_09255) | 2053520..2053756 | + | 237 | WP_236306622.1 | hypothetical protein | - |
| HJ586_RS09245 (HJ586_09260) | 2053826..2054491 | + | 666 | WP_236306863.1 | hypothetical protein | VF |
| HJ586_RS09250 (HJ586_09265) | 2054494..2054769 | + | 276 | WP_057082232.1 | hypothetical protein | VF |
| HJ586_RS09255 (HJ586_09270) | 2054780..2057527 | + | 2748 | WP_236306628.1 | 50S ribosomal protein L33 | VF |
| HJ586_RS09260 (HJ586_09275) | 2057552..2058267 | + | 716 | Protein_1811 | type IV secretion system protein | - |
| HJ586_RS09265 (HJ586_09280) | 2058278..2058502 | + | 225 | WP_012769218.1 | EexN family lipoprotein | - |
| HJ586_RS09270 (HJ586_09285) | 2058514..2059542 | + | 1029 | Protein_1813 | type IV secretion system protein | - |
| HJ586_RS09275 (HJ586_09290) | 2059630..2059770 | + | 141 | WP_016941008.1 | hypothetical protein | - |
| HJ586_RS09280 (HJ586_09295) | 2059763..2060445 | + | 683 | Protein_1815 | hypothetical protein | VF |
| HJ586_RS09285 (HJ586_09300) | 2060445..2061335 | + | 891 | WP_236306629.1 | P-type conjugative transfer protein VirB9 | - |
| HJ586_RS09290 (HJ586_09305) | 2061332..2062540 | + | 1209 | WP_236306631.1 | hypothetical protein | VF |
| HJ586_RS09295 (HJ586_09310) | 2062530..2063546 | + | 1017 | WP_236306632.1 | hypothetical protein | VF |
| HJ586_RS09300 (HJ586_09315) | 2063586..2063888 | + | 303 | WP_236306634.1 | TrbM/KikA/MpfK family conjugal transfer protein | - |
| HJ586_RS09305 (HJ586_09320) | 2064584..2066446 | + | 1863 | WP_236306636.1 | type IV secretion system DNA-binding domain-containing protein | - |
| HJ586_RS09310 (HJ586_09325) | 2066455..2067201 | + | 747 | WP_236306637.1 | MobC family replication-relaxation protein | - |
| HJ586_RS09315 (HJ586_09330) | 2067513..2068160 | - | 648 | WP_236306639.1 | hypothetical protein | - |
| HJ586_RS09320 (HJ586_09335) | 2068147..2068470 | - | 324 | WP_022632974.1 | DUF1778 domain-containing protein | - |
| HJ586_RS09325 (HJ586_09340) | 2069443..2069757 | - | 315 | WP_236306641.1 | CcdB family protein | Toxin Detail |
| HJ586_RS09330 (HJ586_09345) | 2069760..2069996 | - | 237 | WP_012769207.1 | type II toxin-antitoxin system CcdA family antitoxin | Antitoxin Detail |
| HJ586_RS09335 (HJ586_09350) | 2070317..2071261 | - | 945 | WP_236306642.1 | zincin-like metallopeptidase domain-containing protein | - |
| HJ586_RS09340 (HJ586_09355) | 2071967..2074276 | + | 2310 | WP_236306643.1 | TerB N-terminal domain-containing protein | - |
| HJ586_RS09345 (HJ586_09360) | 2074280..2075599 | + | 1320 | WP_236306645.1 | ATP-binding protein | - |
| HJ586_RS09350 (HJ586_09365) | 2075596..2077794 | + | 2199 | WP_236306646.1 | DEAD/DEAH box helicase | - |
| HJ586_RS09355 (HJ586_09370) | 2077952..2078263 | - | 312 | Protein_1830 | IS3 family transposase ISMex11 | Transposase |
| HJ586_RS09360 (HJ586_09375) | 2078349..2079593 | + | 1245 | WP_050570936.1 | IS110 family transposase ISYps2 | Transposase |
| HJ586_RS09365 | 2079819..2080633 | - | 815 | Protein_1832 | IS3 family transposase ISRso16 | Transposase |
| HJ586_RS09370 (HJ586_09390) | 2080961..2081509 | + | 549 | WP_236306648.1 | hypothetical protein | - |
| HJ586_RS09375 (HJ586_09395) | 2081894..2082967 | + | 1074 | WP_236306650.1 | hypothetical protein | - |
| HJ586_RS09380 (HJ586_09400) | 2083697..2084002 | - | 306 | Protein_1835 | IS3 family transposase IS1400 | Transposase |
| HJ586_RS09385 (HJ586_09405) | 2084085..2085330 | + | 1246 | Protein_1836 | IS110 family transposase ISYps2 | Transposase |
| HJ586_RS09390 (HJ586_09410) | 2085556..2086250 | - | 695 | Protein_1837 | IS3 family transposase IS1400 | Transposase |
| HJ586_RS09395 (HJ586_09415) | 2086317..2087339 | + | 1023 | WP_026358149.1 | IS110 family transposase ISSaen1 | Transposase |
| HJ586_RS09400 (HJ586_09420) | 2087562..2087678 | - | 117 | Protein_1839 | IS3 family transposase IS1400 | Transposase |
| HJ586_RS09405 (HJ586_09425) | 2087996..2090185 | - | 2190 | WP_236306652.1 | hypothetical protein | - |
| HJ586_RS09410 | 2090901..2091029 | + | 129 | Protein_1841 | integrase | - |
| HJ586_RS09415 (HJ586_09435) | 2091069..2091194 | + | 126 | Protein_1842 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| HJ586_RS09420 (HJ586_09440) | 2091191..2091505 | - | 315 | WP_110371742.1 | CcdB family protein | - |
| HJ586_RS09425 (HJ586_09445) | 2091508..2091744 | - | 237 | WP_038915937.1 | type II toxin-antitoxin system CcdA family antitoxin | - |
| HJ586_RS09430 (HJ586_09450) | 2091887..2092798 | - | 912 | WP_038915936.1 | LysR substrate-binding domain-containing protein | - |
| HJ586_RS09435 (HJ586_09455) | 2092921..2093697 | + | 777 | WP_019844785.1 | 2OG-Fe dioxygenase family protein | - |
| HJ586_RS09440 (HJ586_09460) | 2093754..2094371 | + | 618 | WP_019844784.1 | LysE family translocator | - |
| HJ586_RS09445 (HJ586_09465) | 2094386..2095030 | + | 645 | WP_019844783.1 | bifunctional phosphoserine phosphatase/homoserine phosphotransferase ThrH | - |
| HJ586_RS09450 (HJ586_09470) | 2095201..2095377 | - | 177 | Protein_1849 | zincin-like metallopeptidase domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|