MGE detailed information
MGE type: Prophage MGE length: 37589 bp
Accession: NZ_CP053014 Location: 1472821..1510409 Organism: Dickeya zeae strain MS_2018 Replicon: chromosome
Accession: NZ_CP053014 Location: 1472821..1510409 Organism: Dickeya zeae strain MS_2018 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HJ586_RS06520 (HJ586_06540) | 1468556..1469551 | + | 996 | WP_012884832.1 | glyceraldehyde-3-phosphate dehydrogenase | - |
| HJ586_RS06525 (HJ586_06545) | 1469718..1470590 | + | 873 | WP_026357943.1 | D-hexose-6-phosphate mutarotase | - |
| HJ586_RS06530 (HJ586_06550) | 1470655..1471506 | - | 852 | WP_236306338.1 | aldo/keto reductase | - |
| HJ586_RS06535 (HJ586_06555) | 1471621..1472370 | - | 750 | WP_038916237.1 | MipA/OmpV family protein | - |
| HJ586_RS06540 (HJ586_06560) | 1472821..1474755 | + | 1935 | WP_236306339.1 | protein kinase YeaG | - |
| HJ586_RS06545 (HJ586_06565) | 1474792..1476069 | + | 1278 | WP_236306340.1 | YeaH/YhbH family protein | - |
| HJ586_RS06550 (HJ586_06570) | 1476162..1476557 | - | 396 | WP_102801720.1 | hypothetical protein | - |
| HJ586_RS06555 (HJ586_06575) | 1476853..1477191 | + | 339 | WP_110371966.1 | YebY family protein | - |
| - | 1477361..1477441 | + | 81 | - | - | Toxin Detail |
| - | 1477361..1477443 | - | 83 | - | - | Antitoxin Detail |
| HJ586_RS06560 (HJ586_06580) | 1477594..1477800 | + | 207 | WP_236306341.1 | hypothetical protein | - |
| HJ586_RS06565 (HJ586_06585) | 1477976..1478230 | - | 255 | WP_236306342.1 | hypothetical protein | - |
| HJ586_RS06570 (HJ586_06590) | 1478867..1479361 | - | 495 | WP_236306343.1 | glycoside hydrolase family 104 protein | - |
| HJ586_RS06575 (HJ586_06595) | 1479345..1479668 | - | 324 | WP_236306344.1 | phage holin, lambda family | - |
| HJ586_RS06580 (HJ586_06600) | 1479821..1480222 | - | 402 | WP_236306345.1 | hypothetical protein | - |
| HJ586_RS06585 (HJ586_06605) | 1480224..1480820 | - | 597 | WP_236306840.1 | hypothetical protein | - |
| HJ586_RS06590 | 1480805..1480984 | - | 180 | WP_236306346.1 | hypothetical protein | - |
| HJ586_RS06595 (HJ586_06610) | 1481178..1481990 | + | 813 | WP_236306347.1 | hypothetical protein | - |
| HJ586_RS06600 (HJ586_06615) | 1482174..1482383 | - | 210 | WP_236306348.1 | VRR-NUC domain-containing protein | - |
| HJ586_RS06605 (HJ586_06620) | 1482404..1483348 | - | 945 | WP_236306349.1 | hypothetical protein | - |
| HJ586_RS06610 (HJ586_06625) | 1483462..1483632 | - | 171 | WP_236306350.1 | hypothetical protein | - |
| HJ586_RS06615 (HJ586_06630) | 1483652..1483906 | - | 255 | Protein_1287 | DUF1364 family protein | - |
| HJ586_RS06620 (HJ586_06635) | 1484048..1485198 | + | 1151 | WP_236306352.1 | IS3 family transposase ISEal1 | Transposase |
| HJ586_RS06625 | 1485226..1485543 | - | 318 | WP_236306353.1 | DUF1367 family protein | - |
| HJ586_RS06630 (HJ586_06645) | 1485584..1486009 | + | 426 | Protein_1290 | IS21 family transposase IS640 | Transposase |
| HJ586_RS06635 (HJ586_06650) | 1486102..1486335 | + | 234 | WP_236306354.1 | IS21 family transposase IS21 | Transposase |
| HJ586_RS06640 (HJ586_06655) | 1486401..1487153 | - | 753 | WP_236306355.1 | IclR family transcriptional regulator | - |
| HJ586_RS06645 (HJ586_06660) | 1487556..1487948 | + | 393 | WP_023639774.1 | RidA family protein | - |
| HJ586_RS06650 (HJ586_06665) | 1488087..1488923 | + | 837 | WP_019845030.1 | transporter substrate-binding domain-containing protein | - |
| HJ586_RS06655 (HJ586_06670) | 1488973..1489713 | + | 741 | WP_038916240.1 | amino acid ABC transporter permease | - |
| HJ586_RS06660 (HJ586_06675) | 1489710..1490354 | + | 645 | WP_019845028.1 | amino acid ABC transporter permease | - |
| HJ586_RS06665 (HJ586_06680) | 1490351..1491088 | + | 738 | WP_236306356.1 | 2-succinylbenzoate--CoA ligase | VF |
| HJ586_RS06670 (HJ586_06685) | 1491100..1492371 | + | 1272 | WP_236306357.1 | alanine racemase | - |
| HJ586_RS06675 (HJ586_06690) | 1492552..1493061 | - | 510 | WP_012884849.1 | non-heme ferritin | - |
| HJ586_RS06680 (HJ586_06695) | 1493368..1494246 | - | 879 | WP_236306358.1 | copper homeostasis membrane protein CopD | - |
| HJ586_RS06685 (HJ586_06700) | 1494265..1494645 | - | 381 | WP_019845025.1 | copper homeostasis periplasmic binding protein CopC | - |
| HJ586_RS06690 (HJ586_06705) | 1494807..1495037 | + | 231 | WP_019845024.1 | DNA polymerase III subunit theta | - |
| HJ586_RS06695 (HJ586_06710) | 1495621..1497672 | - | 2052 | WP_236306359.1 | prolyl oligopeptidase family serine peptidase | - |
| HJ586_RS06700 (HJ586_06715) | 1497950..1499128 | + | 1179 | WP_023639780.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| HJ586_RS06705 (HJ586_06720) | 1499223..1499864 | - | 642 | WP_023639781.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| HJ586_RS06710 (HJ586_06725) | 1500019..1501494 | - | 1476 | WP_012884857.1 | glucose-6-phosphate dehydrogenase | - |
| HJ586_RS06715 (HJ586_06730) | 1501860..1502729 | + | 870 | WP_019845019.1 | MurR/RpiR family transcriptional regulator | - |
| HJ586_RS06720 (HJ586_06735) | 1502914..1504356 | + | 1443 | WP_012884859.1 | pyruvate kinase | - |
| HJ586_RS06725 (HJ586_06740) | 1504510..1504932 | - | 423 | WP_236306360.1 | hypothetical protein | - |
| HJ586_RS06730 (HJ586_06745) | 1505189..1505569 | - | 381 | WP_023639783.1 | hypothetical protein | - |
| HJ586_RS06735 (HJ586_06750) | 1505983..1506969 | - | 987 | WP_236306361.1 | Tyrosine recombinase XerS | VF |
| HJ586_RS06740 (HJ586_06755) | 1507119..1508537 | - | 1419 | WP_023639785.1 | hypothetical protein | VF |
| HJ586_RS06745 (HJ586_06760) | 1508550..1509575 | - | 1026 | WP_236306362.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| HJ586_RS06750 (HJ586_06765) | 1509651..1510409 | + | 759 | WP_236306363.1 | 4-chlorobenzoate--CoA ligase | VF |
| HJ586_RS06755 (HJ586_06770) | 1510406..1511191 | + | 786 | WP_012884866.1 | zinc ABC transporter permease subunit ZnuB | - |
| HJ586_RS06760 (HJ586_06775) | 1511312..1512322 | - | 1011 | WP_236306364.1 | Holliday junction branch migration DNA helicase RuvB | - |
| HJ586_RS06765 (HJ586_06780) | 1512330..1512947 | - | 618 | WP_038914023.1 | Holliday junction branch migration protein RuvA | - |
| HJ586_RS06770 (HJ586_06785) | 1513177..1513698 | - | 522 | WP_012884869.1 | crossover junction endodeoxyribonuclease RuvC | - |
| HJ586_RS06775 (HJ586_06790) | 1513739..1514482 | - | 744 | WP_012884870.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| HJ586_RS06780 (HJ586_06795) | 1514554..1515003 | - | 450 | WP_168362577.1 | dihydroneopterin triphosphate diphosphatase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|