Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1477361..1477443 | Replicon | chromosome |
| Accession | NZ_CP053014 | ||
| Organism | Dickeya zeae strain MS_2018 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1477361..1477441 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1477361..1477443 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HJ586_RS06540 (HJ586_06560) | 1472821..1474755 | + | 1935 | WP_236306339.1 | protein kinase YeaG | - |
| HJ586_RS06545 (HJ586_06565) | 1474792..1476069 | + | 1278 | WP_236306340.1 | YeaH/YhbH family protein | - |
| HJ586_RS06550 (HJ586_06570) | 1476162..1476557 | - | 396 | WP_102801720.1 | hypothetical protein | - |
| HJ586_RS06555 (HJ586_06575) | 1476853..1477191 | + | 339 | WP_110371966.1 | YebY family protein | - |
| - | 1477361..1477441 | + | 81 | - | - | Toxin |
| - | 1477361..1477443 | - | 83 | - | - | Antitoxin |
| HJ586_RS06560 (HJ586_06580) | 1477594..1477800 | + | 207 | WP_236306341.1 | hypothetical protein | - |
| HJ586_RS06565 (HJ586_06585) | 1477976..1478230 | - | 255 | WP_236306342.1 | hypothetical protein | - |
| HJ586_RS06570 (HJ586_06590) | 1478867..1479361 | - | 495 | WP_236306343.1 | glycoside hydrolase family 104 protein | - |
| HJ586_RS06575 (HJ586_06595) | 1479345..1479668 | - | 324 | WP_236306344.1 | phage holin, lambda family | - |
| HJ586_RS06580 (HJ586_06600) | 1479821..1480222 | - | 402 | WP_236306345.1 | hypothetical protein | - |
| HJ586_RS06585 (HJ586_06605) | 1480224..1480820 | - | 597 | WP_236306840.1 | hypothetical protein | - |
| HJ586_RS06590 | 1480805..1480984 | - | 180 | WP_236306346.1 | hypothetical protein | - |
| HJ586_RS06595 (HJ586_06610) | 1481178..1481990 | + | 813 | WP_236306347.1 | hypothetical protein | - |
| HJ586_RS06600 (HJ586_06615) | 1482174..1482383 | - | 210 | WP_236306348.1 | VRR-NUC domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1472821..1510409 | 37588 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 81 bp
>T155764 NZ_CP053014:1477361-1477441 [Dickeya zeae]
AATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGGGCACAGGAATCGTGTTCGGTCTTTTTT
T
AATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGGGCACAGGAATCGTGTTCGGTCTTTTTT
T
Antitoxin
Download Length: 83 bp
>AT155764 NZ_CP053014:c1477443-1477361 [Dickeya zeae]
ATAAAAAAAGACCGAACACGATTCCTGTGCCCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATT
ATAAAAAAAGACCGAACACGATTCCTGTGCCCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATT
