MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 51652 bp
Accession: NZ_CP053012 Location: 1676725..1728376 Organism: Dickeya zeae MS1 Replicon: chromosome
Accession: NZ_CP053012 Location: 1676725..1728376 Organism: Dickeya zeae MS1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J417_RS07420 (J417_07440) | 1672187..1672362 | + | 176 | Protein_1445 | zincin-like metallopeptidase domain-containing protein | - |
| J417_RS07425 (J417_07445) | 1672533..1673177 | - | 645 | WP_019844783.1 | bifunctional phosphoserine phosphatase/homoserine phosphotransferase ThrH | - |
| J417_RS07430 (J417_07450) | 1673192..1673809 | - | 618 | WP_019844784.1 | LysE family translocator | - |
| J417_RS07435 (J417_07455) | 1673866..1674642 | - | 777 | WP_019844785.1 | 2OG-Fe dioxygenase family protein | - |
| J417_RS07440 (J417_07460) | 1674765..1675676 | + | 912 | WP_019844786.1 | LysR substrate-binding domain-containing protein | - |
| J417_RS07445 (J417_07465) | 1675819..1676055 | + | 237 | WP_019844787.1 | type II toxin-antitoxin system CcdA family antitoxin | - |
| J417_RS07450 (J417_07470) | 1676058..1676372 | + | 315 | WP_019844788.1 | CcdB family protein | - |
| J417_RS07455 (J417_07475) | 1676369..1676494 | - | 126 | Protein_1452 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| J417_RS07460 (J417_07485) | 1677009..1679027 | - | 2019 | WP_019844789.1 | ATP-binding protein | - |
| J417_RS07465 (J417_07490) | 1679024..1680403 | - | 1380 | WP_019844790.1 | DUF4263 domain-containing protein | - |
| J417_RS07470 (J417_07495) | 1680413..1681633 | - | 1221 | WP_019844791.1 | restriction endonuclease subunit S | - |
| J417_RS07475 (J417_07500) | 1681636..1683114 | - | 1479 | WP_019844792.1 | N-6 DNA methylase | - |
| J417_RS07480 (J417_07505) | 1683117..1684922 | - | 1806 | WP_019844793.1 | AAA family ATPase | - |
| J417_RS07485 (J417_07510) | 1684926..1687241 | - | 2316 | WP_019844794.1 | DEAD/DEAH box helicase family protein | - |
| J417_RS07490 | 1687273..1687464 | - | 192 | Protein_1459 | helix-turn-helix transcriptional regulator | - |
| J417_RS07495 (J417_07520) | 1687959..1688903 | + | 945 | WP_026357921.1 | zincin-like metallopeptidase domain-containing protein | - |
| J417_RS07500 (J417_07525) | 1689225..1689461 | + | 237 | WP_019844796.1 | type II toxin-antitoxin system CcdA family antitoxin | Antitoxin Detail |
| J417_RS07505 (J417_07530) | 1689464..1689778 | + | 315 | WP_019844797.1 | CcdB family protein | Toxin Detail |
| J417_RS07510 (J417_07535) | 1689775..1690026 | - | 252 | WP_019844798.1 | hypothetical protein | - |
| J417_RS07515 | 1690088..1690612 | + | 525 | WP_236377707.1 | hypothetical protein | - |
| J417_RS07520 | 1690584..1690955 | + | 372 | WP_236377708.1 | SIR2 family protein | - |
| J417_RS07525 | 1690948..1691400 | + | 453 | WP_236377709.1 | hypothetical protein | - |
| J417_RS07530 (J417_07545) | 1691652..1691913 | + | 262 | Protein_1467 | zincin-like metallopeptidase domain-containing protein | - |
| J417_RS07535 (J417_07550) | 1692349..1693125 | + | 777 | WP_019844800.1 | Serine/threonine-protein kinase PknL | VF |
| J417_RS07540 (J417_07555) | 1693122..1693859 | + | 738 | WP_019844801.1 | PP2C-family Ser/Thr phosphatase | VF |
| J417_RS07545 (J417_07560) | 1693910..1694059 | + | 150 | Protein_1470 | transposase | - |
| J417_RS07550 (J417_07565) | 1694371..1694700 | + | 330 | WP_019844802.1 | hypothetical protein | - |
| J417_RS07555 (J417_07570) | 1694829..1695575 | - | 747 | WP_019844803.1 | MobC family replication-relaxation protein | - |
| J417_RS07560 (J417_07575) | 1695585..1697444 | - | 1860 | WP_026357922.1 | type IV secretion system DNA-binding domain-containing protein | - |
| J417_RS07565 (J417_07580) | 1698136..1698444 | - | 309 | WP_019844804.1 | TrbM/KikA/MpfK family conjugal transfer protein | - |
| J417_RS07570 (J417_07585) | 1698485..1699501 | - | 1017 | WP_019844805.1 | Type IV secretion system protein VirB11 | VF |
| J417_RS07575 (J417_07590) | 1699491..1700699 | - | 1209 | WP_019844806.1 | Type IV secretion system protein virB10 | VF |
| J417_RS07580 (J417_07595) | 1700696..1701589 | - | 894 | WP_019844807.1 | P-type conjugative transfer protein VirB9 | - |
| J417_RS07585 (J417_07600) | 1701586..1702269 | - | 684 | WP_019844808.1 | Type IV secretion system protein PtlE | VF |
| J417_RS07590 (J417_07605) | 1702262..1702402 | - | 141 | WP_012769216.1 | hypothetical protein | - |
| J417_RS07595 (J417_07610) | 1702490..1703518 | - | 1029 | WP_019844809.1 | type IV secretion system protein | - |
| J417_RS07600 (J417_07615) | 1703594..1703869 | - | 276 | WP_019844810.1 | EexN family lipoprotein | - |
| J417_RS07605 (J417_07620) | 1703880..1704599 | - | 720 | WP_019844811.1 | type IV secretion system protein | - |
| J417_RS07610 (J417_07625) | 1704624..1707371 | - | 2748 | WP_026357923.1 | Type IV secretion system protein virB4 | VF |
| J417_RS07615 (J417_07630) | 1707382..1707657 | - | 276 | WP_033581663.1 | hypothetical protein | VF |
| J417_RS07620 (J417_07635) | 1707677..1708324 | - | 648 | WP_019844814.1 | Type IV secretion system protein virB1 | VF |
| J417_RS07625 (J417_07640) | 1708395..1708632 | - | 238 | Protein_1486 | hypothetical protein | - |
| J417_RS07630 (J417_07645) | 1709542..1711056 | + | 1515 | WP_019844816.1 | SIR2 family protein | - |
| J417_RS07635 (J417_07650) | 1711329..1713338 | - | 2010 | WP_019844817.1 | AAA family ATPase | - |
| J417_RS07640 (J417_07655) | 1713793..1714002 | - | 210 | WP_015730135.1 | TraR/DksA family transcriptional regulator | - |
| J417_RS07645 (J417_07660) | 1713992..1714576 | - | 585 | WP_019844818.1 | DUF2857 domain-containing protein | - |
| J417_RS07650 (J417_07665) | 1714593..1714787 | - | 195 | WP_019844819.1 | AlpA family transcriptional regulator | - |
| J417_RS07655 (J417_07670) | 1715284..1715541 | - | 258 | WP_016940998.1 | helix-turn-helix transcriptional regulator | - |
| J417_RS07660 (J417_07675) | 1715655..1715933 | - | 279 | WP_016940997.1 | HTH-type transcriptional regulator Xre | VF |
| J417_RS07665 (J417_07680) | 1716067..1716336 | + | 270 | WP_012884169.1 | helix-turn-helix transcriptional regulator | - |
| J417_RS07670 (J417_07685) | 1716688..1716933 | - | 246 | WP_012769232.1 | helix-turn-helix transcriptional regulator | - |
| J417_RS07675 (J417_07690) | 1717894..1718412 | + | 519 | WP_019844820.1 | Major exported protein | VF |
| J417_RS07680 (J417_07695) | 1718524..1720485 | + | 1962 | WP_019844821.1 | Actin cross-linking toxin VgrG1 | VF |
| J417_RS07685 (J417_07700) | 1720482..1721312 | + | 831 | WP_019844822.1 | DUF4123 domain-containing protein | - |
| J417_RS07690 (J417_07705) | 1721324..1722868 | + | 1545 | WP_019844823.1 | hypothetical protein | - |
| J417_RS07695 (J417_07710) | 1722883..1723905 | + | 1023 | WP_019844824.1 | hypothetical protein | - |
| J417_RS07700 (J417_07715) | 1723931..1724197 | + | 267 | WP_016940991.1 | type VI secretion system PAAR protein | - |
| J417_RS07705 (J417_07720) | 1724496..1725422 | - | 927 | WP_019844825.1 | hypothetical protein | - |
| J417_RS07710 (J417_07725) | 1726449..1726760 | + | 312 | WP_019844827.1 | DUF736 domain-containing protein | - |
| J417_RS07715 (J417_07730) | 1726916..1728199 | - | 1284 | WP_019844828.1 | Prophage integrase IntS ; Integrase | Integrase |
| J417_RS07725 (J417_07740) | 1728651..1731761 | - | 3111 | WP_019844829.1 | beta-galactosidase | - |
| J417_RS07730 (J417_07745) | 1731952..1733025 | - | 1074 | WP_019844830.1 | LacI family DNA-binding transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|