MGE detailed information
MGE type: Conjugative plasmid MGE length: 87627 bp
Accession: NZ_CP052880 Location: 1..87627 Organism: Escherichia coli strain C21 Replicon: plasmid pC21-3
Accession: NZ_CP052880 Location: 1..87627 Organism: Escherichia coli strain C21 Replicon: plasmid pC21-3
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HJD21_RS23415 () | 455..1486 | + | 1032 | WP_000907869.1 | replication initiation protein | - |
| HJD21_RS23420 () | 2391..2675 | + | 285 | WP_053264324.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
| HJD21_RS23425 () | 2675..2950 | + | 276 | WP_169711495.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| HJD21_RS23430 () | 3056..3337 | + | 282 | WP_001105066.1 | hypothetical protein | - |
| HJD21_RS23435 () | 3529..3795 | - | 267 | WP_021513970.1 | hypothetical protein | - |
| HJD21_RS23440 () | 3795..4289 | - | 495 | WP_015058884.1 | hypothetical protein | - |
| HJD21_RS23445 () | 4345..4947 | - | 603 | WP_000521606.1 | hypothetical protein | - |
| HJD21_RS23450 () | 5123..6175 | - | 1053 | WP_000655519.1 | hypothetical protein | - |
| HJD21_RS23455 () | 6388..6978 | - | 591 | WP_112925504.1 | hypothetical protein | - |
| HJD21_RS23460 () | 6978..7232 | - | 255 | WP_000343103.1 | hypothetical protein | - |
| HJD21_RS23465 () | 7801..8214 | + | 414 | WP_000465043.1 | hypothetical protein | - |
| HJD21_RS23470 () | 8216..8995 | + | 780 | WP_001164198.1 | site-specific integrase | - |
| HJD21_RS23475 () | 9175..9819 | + | 645 | WP_001144036.1 | ParA family protein | - |
| HJD21_RS23480 () | 9906..10214 | + | 309 | WP_000030199.1 | hypothetical protein | - |
| HJD21_RS23485 () | 10628..11608 | + | 981 | WP_000688514.1 | plasmid segregation protein ParM | - |
| HJD21_RS23490 () | 11601..12017 | + | 417 | WP_001278818.1 | plasmid partitioning/stability family protein | - |
| HJD21_RS23495 () | 12019..13293 | - | 1275 | WP_053266915.1 | Y-family DNA polymerase | - |
| HJD21_RS23500 () | 13293..13730 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| HJD21_RS23505 () | 13727..13975 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| HJD21_RS23510 () | 14393..15295 | + | 903 | WP_169711499.1 | DUF1281 domain-containing protein | - |
| HJD21_RS23515 () | 15299..15604 | + | 306 | WP_015058890.1 | hypothetical protein | - |
| HJD21_RS23520 () | 15680..16363 | + | 684 | WP_021513974.1 | DNA methylase | - |
| HJD21_RS23525 () | 16364..16585 | + | 222 | WP_001104885.1 | hypothetical protein | - |
| HJD21_RS23530 () | 16598..17032 | + | 435 | WP_000274472.1 | DUF1380 family protein | - |
| HJD21_RS23535 () | 17083..17853 | + | 771 | WP_001434682.1 | hypothetical protein | - |
| HJD21_RS23545 () | 18390..18692 | + | 303 | WP_014653258.1 | antirestriction protein | - |
| HJD21_RS23550 () | 18739..19161 | + | 423 | WP_000271741.1 | DUF1380 family protein | - |
| HJD21_RS23555 () | 19158..19349 | + | 192 | WP_001027516.1 | hypothetical protein | - |
| HJD21_RS23560 () | 20120..20647 | + | 528 | WP_001276125.1 | single-stranded DNA-binding protein | - |
| HJD21_RS23565 () | 20705..20938 | + | 234 | WP_000006024.1 | DUF905 domain-containing protein | - |
| HJD21_RS23570 () | 20997..22955 | + | 1959 | WP_169711496.1 | ParB/RepB/Spo0J family partition protein | - |
| HJD21_RS23575 () | 23010..23444 | + | 435 | WP_001578018.1 | conjugation system SOS inhibitor PsiB | - |
| HJD21_RS23580 () | 23441..24159 | + | 719 | Protein_32 | plasmid SOS inhibition protein A | - |
| HJD21_RS23585 () | 24156..24752 | + | 597 | WP_000977995.1 | hypothetical protein | - |
| HJD21_RS23595 () | 25214..25714 | + | 501 | WP_000117622.1 | antirestriction protein ArdA | - |
| HJD21_RS23600 () | 26443..26877 | + | 435 | WP_000218863.1 | hypothetical protein | - |
| HJD21_RS23605 () | 26970..27236 | + | 267 | WP_001247862.1 | hypothetical protein | - |
| HJD21_RS23610 () | 27301..28191 | + | 891 | WP_000038399.1 | Recombination-promoting nuclease RpnA | VF |
| HJD21_RS23615 () | 28254..28448 | + | 195 | WP_061671610.1 | hypothetical protein | VF |
| HJD21_RS23620 () | 28479..28730 | - | 252 | WP_000148286.1 | helix-turn-helix domain-containing protein | - |
| HJD21_RS23625 () | 28764..28961 | - | 198 | WP_052975742.1 | hypothetical protein | - |
| HJD21_RS23630 () | 29311..30159 | + | 849 | WP_021513954.1 | DUF4942 domain-containing protein | - |
| HJD21_RS23635 () | 30245..30580 | - | 336 | WP_000157095.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| HJD21_RS23640 () | 30814..31146 | + | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| HJD21_RS23645 () | 31157..33856 | + | 2700 | WP_011264053.1 | Protein TraI | Relaxase |
| HJD21_RS23650 () | 34066..35265 | - | 1200 | WP_000948429.1 | IS91 family transposase ISSbo1 | Transposase |
| HJD21_RS23655 () | 35275..35463 | - | 189 | WP_000957857.1 | hypothetical protein | - |
| HJD21_RS23660 () | 35581..37872 | - | 2292 | WP_072107381.1 | conjugal transfer protein TrbC | - |
| HJD21_RS23665 () | 37865..38935 | - | 1071 | WP_000151579.1 | IncI1-type conjugal transfer protein TrbB | - |
| HJD21_RS23670 () | 38954..40162 | - | 1209 | WP_169711497.1 | IncI1-type conjugal transfer protein TrbA | - |
| HJD21_RS23675 () | 40380..41366 | - | 987 | WP_001257838.1 | hypothetical protein | - |
| - () | 41527..41584 | - | 58 | NuclAT_0 | - | - |
| - () | 41527..41584 | - | 58 | NuclAT_0 | - | - |
| - () | 41527..41584 | - | 58 | NuclAT_0 | - | - |
| - () | 41527..41584 | - | 58 | NuclAT_0 | - | - |
| HJD21_RS23680 () | 41639..41791 | + | 153 | WP_001331364.1 | Hok/Gef family protein | Toxin Detail |
| HJD21_RS23685 () | 41863..42114 | - | 252 | WP_001291964.1 | hypothetical protein | - |
| HJD21_RS23690 () | 42587..43815 | + | 1229 | WP_089541817.1 | IS3 family transposase IS2 | Transposase |
| HJD21_RS23695 () | 44109..44285 | - | 177 | WP_001054901.1 | hypothetical protein | - |
| HJD21_RS23700 () | 44617..44826 | + | 210 | WP_000062602.1 | HEAT repeat domain-containing protein | - |
| HJD21_RS23705 () | 44898..45560 | - | 663 | WP_124983586.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| HJD21_RS23710 () | 45631..47799 | - | 2169 | WP_000698368.1 | DotA/TraY family protein | - |
| HJD21_RS23715 () | 47896..48480 | - | 585 | WP_060527640.1 | IncI1-type conjugal transfer protein TraX | - |
| HJD21_RS23720 () | 48509..49711 | - | 1203 | WP_001189156.1 | IncI1-type conjugal transfer protein TraW | - |
| HJD21_RS23725 () | 49678..50292 | - | 615 | WP_000337399.1 | IncI1-type conjugal transfer protein TraV | - |
| HJD21_RS23730 () | 50292..53336 | - | 3045 | WP_071447696.1 | IncI1-type conjugal transfer protein TraU | - |
| HJD21_RS23735 () | 53426..54226 | - | 801 | WP_060527642.1 | IncI1-type conjugal transfer protein TraT | - |
| HJD21_RS23740 () | 54210..54398 | - | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| HJD21_RS23745 () | 54462..54866 | - | 405 | WP_000086960.1 | IncI1-type conjugal transfer protein TraR | - |
| HJD21_RS23750 () | 54917..55444 | - | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| HJD21_RS23755 () | 55444..56148 | - | 705 | WP_000801920.1 | IncI1-type conjugal transfer protein TraP | - |
| HJD21_RS23760 () | 56148..57437 | - | 1290 | WP_001271994.1 | conjugal transfer protein TraO | - |
| HJD21_RS23765 () | 57440..58423 | - | 984 | WP_021513963.1 | hypothetical protein | VF |
| HJD21_RS23770 () | 58434..59126 | - | 693 | WP_000138552.1 | DotI/IcmL family type IV secretion protein | - |
| HJD21_RS23775 () | 59123..59470 | - | 348 | WP_001055900.1 | conjugal transfer protein | - |
| HJD21_RS23780 () | 59488..63255 | - | 3768 | WP_021513964.1 | hypothetical protein | - |
| HJD21_RS23785 () | 63345..63896 | - | 552 | WP_000014584.1 | Phospholipase D | VF |
| HJD21_RS23790 () | 63911..64201 | - | 291 | WP_001299214.1 | hypothetical protein | - |
| HJD21_RS23795 () | 64198..65346 | - | 1149 | WP_001024976.1 | putative protein YggR | VF |
| HJD21_RS23800 () | 65343..66161 | - | 819 | WP_000646097.1 | hypothetical protein | VF |
| HJD21_RS23805 () | 66158..66616 | - | 459 | WP_001079808.1 | hypothetical protein | VF |
| HJD21_RS23810 () | 67011..67595 | - | 585 | WP_000977525.1 | histidine phosphatase family protein | - |
| HJD21_RS23815 () | 67655..68857 | - | 1203 | WP_000976353.1 | conjugal transfer protein TraF | - |
| HJD21_RS23820 () | 68943..69767 | - | 825 | WP_015058912.1 | conjugal transfer protein TraE | - |
| HJD21_RS23825 () | 69918..71072 | - | 1155 | WP_001139955.1 | integrase | - |
| HJD21_RS23830 () | 72832..74120 | - | 1289 | Protein_81 | hypothetical protein | VF |
| HJD21_RS23835 () | 74120..74776 | - | 657 | WP_001193551.1 | hypothetical protein | VF |
| HJD21_RS23840 () | 74761..75321 | - | 561 | WP_000014005.1 | hypothetical protein | VF |
| HJD21_RS23845 () | 75331..75945 | - | 615 | WP_052980409.1 | hypothetical protein | VF |
| HJD21_RS23850 () | 75962..77047 | - | 1086 | WP_094320270.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| HJD21_RS23855 () | 77060..78613 | - | 1554 | WP_169711498.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| HJD21_RS23860 () | 78624..79076 | - | 453 | WP_058649963.1 | hypothetical protein | VF |
| HJD21_RS23865 () | 79063..80358 | - | 1296 | WP_000752776.1 | type 4b pilus protein PilO2 | - |
| HJD21_RS23870 () | 80351..82033 | - | 1683 | WP_000748143.1 | Outer membrane lipoprotein BfpB | VF |
| HJD21_RS23875 () | 82047..82484 | - | 438 | WP_000539811.1 | hypothetical protein | VF |
| HJD21_RS23880 () | 82484..83536 | - | 1053 | WP_169711500.1 | hypothetical protein | VF |
| HJD21_RS23885 () | 84303..84557 | - | 255 | WP_001136187.1 | PilI type IV pilus biogenesis protein | - |
| HJD21_RS23890 () | 84729..85412 | - | 684 | WP_000213859.1 | conjugal transfer protein TraC | - |
| HJD21_RS23895 () | 85666..86199 | - | 534 | WP_001372168.1 | transcription termination factor NusG | - |
| HJD21_RS23900 () | 86641..86928 | - | 288 | WP_000074855.1 | conjugal transfer protein TraA | - |
| HJD21_RS23905 () | 86846..87109 | - | 264 | WP_001387472.1 | ash family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|