MGE detailed information
MGE type: Genomic_island MGE length: 20682 bp
Accession: NZ_CP051711 Location: 3956686..3977367 Organism: Escherichia coli strain SCU-123 Replicon: chromosome
Accession: NZ_CP051711 Location: 3956686..3977367 Organism: Escherichia coli strain SCU-123 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HHJ36_RS18855 () | 3952801..3953226 | - | 426 | WP_000946068.1 | type VI secretion system baseplate subunit TssE | - |
| HHJ36_RS18860 () | 3953231..3954715 | - | 1485 | WP_000111582.1 | type VI secretion system contractile sheath large subunit | - |
| HHJ36_RS18865 () | 3954738..3955241 | - | 504 | WP_000041480.1 | type VI secretion system contractile sheath small subunit | - |
| HHJ36_RS18870 () | 3955947..3956465 | + | 519 | WP_001142963.1 | Hcp family type VI secretion system effector | - |
| HHJ36_RS18875 () | 3956686..3958668 | + | 1983 | WP_000053636.1 | hypothetical protein | VF |
| HHJ36_RS18880 () | 3958775..3959821 | + | 1047 | WP_000571853.1 | DUF2169 domain-containing protein | - |
| HHJ36_RS18885 () | 3959814..3961253 | + | 1440 | WP_000528852.1 | DUF4150 domain-containing protein | - |
| HHJ36_RS18890 () | 3961228..3961518 | + | 291 | WP_000513317.1 | hypothetical protein | - |
| HHJ36_RS18895 () | 3961776..3962540 | + | 765 | Protein_3684 | ISAs1 family transposase ISEc1 | Transposase |
| HHJ36_RS18900 () | 3962769..3963272 | + | 504 | WP_000227712.1 | hypothetical protein | - |
| HHJ36_RS18905 () | 3963366..3963854 | + | 489 | WP_001298174.1 | integrating conjugative element protein | - |
| HHJ36_RS18910 () | 3963880..3964074 | + | 195 | Protein_3687 | transposase | - |
| HHJ36_RS18915 () | 3964125..3964895 | - | 771 | WP_001118042.1 | 2-oxoglutaramate amidase | - |
| HHJ36_RS18920 () | 3965076..3965522 | + | 447 | WP_001308392.1 | Ivy family C-type lysozyme inhibitor | - |
| HHJ36_RS18925 () | 3965565..3968009 | - | 2445 | WP_000973137.1 | hypothetical protein | VF |
| HHJ36_RS18930 () | 3968249..3968827 | + | 579 | WP_000284050.1 | hypothetical protein | VF |
| HHJ36_RS18935 () | 3969032..3969799 | + | 768 | WP_001331866.1 | class II glutamine amidotransferase | - |
| HHJ36_RS18940 () | 3969770..3970510 | - | 741 | WP_001225679.1 | murein L,D-transpeptidase | - |
| HHJ36_RS18945 () | 3970822..3971571 | + | 750 | WP_000093934.1 | hypothetical protein | VF |
| HHJ36_RS18950 () | 3971747..3972244 | + | 498 | WP_000006241.1 | REP-associated tyrosine transposase RayT | - |
| HHJ36_RS18955 () | 3972327..3972485 | - | 159 | WP_014639450.1 | hypothetical protein | - |
| HHJ36_RS18960 () | 3972564..3974276 | - | 1713 | Protein_3697 | hypothetical protein | VF |
| HHJ36_RS18965 () | 3974248..3975033 | + | 786 | WP_000207544.1 | hypothetical protein | VF |
| HHJ36_RS18970 () | 3975104..3976159 | + | 1056 | WP_001226168.1 | DNA polymerase IV | - |
| HHJ36_RS18975 () | 3976211..3976504 | + | 294 | WP_000554758.1 | type I toxin-antitoxin system antitoxin YafN | Antitoxin Detail |
| HHJ36_RS18980 () | 3976507..3976905 | + | 399 | WP_001263500.1 | type II toxin-antitoxin system mRNA interferase toxin YafO | Toxin Detail |
| HHJ36_RS18985 () | 3976915..3977367 | + | 453 | WP_001059895.1 | GNAT family N-acetyltransferase | - |
| HHJ36_RS18990 () | 3977557..3978696 | + | 1140 | WP_000521577.1 | RNA ligase RtcB family protein | - |
| HHJ36_RS18995 () | 3978693..3979307 | + | 615 | WP_000602123.1 | peptide chain release factor H | - |
| HHJ36_RS19000 () | 3979364..3980821 | - | 1458 | WP_001292999.1 | cytosol nonspecific dipeptidase | - |
| HHJ36_RS19005 () | 3981082..3981540 | + | 459 | WP_001291988.1 | xanthine phosphoribosyltransferase | - |
| - () | 3982136..3982216 | + | 81 | NuclAT_4 | - | - |
| - () | 3982136..3982216 | + | 81 | NuclAT_4 | - | - |
| - () | 3982136..3982216 | + | 81 | NuclAT_4 | - | - |
| - () | 3982136..3982216 | + | 81 | NuclAT_4 | - | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|