MGE detailed information
MGE type: Conjugative plasmid MGE length: 93339 bp
Accession: NZ_CP051702 Location: 1..93339 Organism: Escherichia coli strain SCU-125 Replicon: plasmid pSCU-125-2
Accession: NZ_CP051702 Location: 1..93339 Organism: Escherichia coli strain SCU-125 Replicon: plasmid pSCU-125-2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HHJ38_RS25345 () | 1..879 | + | 879 | WP_000729439.1 | incFII family plasmid replication initiator RepA | - |
| HHJ38_RS25350 () | 1778..2062 | + | 285 | WP_001178087.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
| HHJ38_RS25355 () | 2062..2337 | + | 276 | WP_000421257.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| HHJ38_RS25360 () | 2443..2724 | + | 282 | WP_001105066.1 | hypothetical protein | - |
| HHJ38_RS26020 () | 2915..3181 | - | 267 | WP_000627831.1 | hypothetical protein | - |
| HHJ38_RS25365 () | 3319..3921 | - | 603 | WP_000517694.1 | hypothetical protein | - |
| HHJ38_RS25370 () | 4275..5621 | + | 1347 | WP_001132037.1 | hypothetical protein | - |
| HHJ38_RS25375 () | 5826..7397 | - | 1572 | WP_000381395.1 | IS66 family transposase ISCro1 | Transposase |
| HHJ38_RS25380 () | 7417..7764 | - | 348 | WP_000624622.1 | IS66 family transposase ISCro1 | Transposase |
| HHJ38_RS25385 () | 7764..8441 | - | 678 | WP_059339860.1 | IS66 family transposase ISCro1 | Transposase |
| HHJ38_RS25390 () | 8847..9149 | - | 303 | WP_001245884.1 | hypothetical protein | - |
| HHJ38_RS25395 () | 9146..9772 | - | 627 | WP_000587689.1 | ParA family plasmid-partitioning AAA ATPase | - |
| HHJ38_RS25400 () | 9968..10504 | - | 537 | Protein_12 | DUF4113 domain-containing protein | - |
| HHJ38_RS25405 () | 10558..11262 | + | 705 | WP_001067838.1 | IS6 family transposase IS26 | Transposase |
| HHJ38_RS25410 () | 11498..12511 | - | 1014 | WP_000845048.1 | IS91 family transposase ISAzo26 | Transposase |
| HHJ38_RS25415 () | 12667..13140 | + | 474 | WP_001317507.1 | Dihydrofolate reductase type 1 | ARG |
| HHJ38_RS25420 () | 13324..13671 | + | 348 | WP_000679427.1 | Multidrug transporter EmrE | ARG |
| HHJ38_RS25425 () | 13665..14504 | + | 840 | WP_000259031.1 | Dihydropteroate synthase | ARG |
| HHJ38_RS25430 () | 14632..15132 | + | 501 | WP_000376623.1 | GNAT family N-acetyltransferase | - |
| HHJ38_RS25435 () | 15233..16003 | - | 771 | Protein_19 | translesion error-prone DNA polymerase V subunit UmuC | - |
| HHJ38_RS25440 () | 16003..16440 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| HHJ38_RS25445 () | 16437..16685 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| HHJ38_RS25450 () | 17104..18006 | + | 903 | WP_169063643.1 | DUF1281 domain-containing protein | - |
| HHJ38_RS25455 () | 18003..18315 | + | 313 | Protein_23 | hypothetical protein | - |
| HHJ38_RS25460 () | 18391..19074 | + | 684 | WP_000086137.1 | DNA methylase | - |
| HHJ38_RS25465 () | 19075..19296 | + | 222 | WP_001104873.1 | hypothetical protein | - |
| HHJ38_RS25470 () | 19310..19744 | + | 435 | WP_000274421.1 | DUF1380 family protein | - |
| HHJ38_RS25475 () | 19861..20431 | + | 571 | Protein_27 | DUF1472 domain-containing protein | - |
| HHJ38_RS25480 () | 20527..20829 | + | 303 | WP_072105978.1 | antirestriction protein | - |
| HHJ38_RS25485 () | 20876..21298 | + | 423 | WP_000271757.1 | DUF1380 family protein | - |
| HHJ38_RS25490 () | 21295..21486 | + | 192 | WP_001027516.1 | hypothetical protein | - |
| HHJ38_RS25495 () | 21557..21871 | + | 315 | WP_001434357.1 | hypothetical protein | - |
| HHJ38_RS25500 () | 22255..22782 | + | 528 | WP_001276104.1 | single-stranded DNA-binding protein | - |
| HHJ38_RS25505 () | 22840..23073 | + | 234 | WP_000006025.1 | DUF905 domain-containing protein | - |
| HHJ38_RS25510 () | 23132..25090 | + | 1959 | WP_169063642.1 | ParB/RepB/Spo0J family partition protein | - |
| HHJ38_RS25515 () | 25145..25579 | + | 435 | WP_001578018.1 | conjugation system SOS inhibitor PsiB | - |
| HHJ38_RS25520 () | 25576..26295 | + | 720 | WP_001276270.1 | plasmid SOS inhibition protein A | - |
| HHJ38_RS25525 () | 26292..26888 | + | 597 | WP_000977998.1 | hypothetical protein | - |
| HHJ38_RS25530 () | 26960..27429 | + | 470 | Protein_38 | DUF1472 domain-containing protein | - |
| HHJ38_RS25535 () | 27350..27850 | + | 501 | WP_000117632.1 | antirestriction protein ArdA | - |
| HHJ38_RS25540 () | 28583..29017 | + | 435 | WP_000218862.1 | hypothetical protein | - |
| HHJ38_RS25545 () | 29110..29376 | + | 267 | WP_001247860.1 | hypothetical protein | - |
| HHJ38_RS25550 () | 29554..29943 | + | 390 | WP_000833767.1 | hypothetical protein | - |
| HHJ38_RS25555 () | 29940..30830 | + | 891 | WP_000038343.1 | Recombination-promoting nuclease RpnA | VF |
| HHJ38_RS25560 () | 30830..31075 | + | 246 | WP_001260882.1 | hypothetical protein | - |
| HHJ38_RS25565 () | 31106..31357 | - | 252 | WP_000148286.1 | helix-turn-helix domain-containing protein | - |
| HHJ38_RS25570 () | 31938..32786 | + | 849 | WP_001401764.1 | DUF4942 domain-containing protein | - |
| HHJ38_RS25575 () | 32872..33207 | - | 336 | WP_000157091.1 | hypothetical protein | - |
| HHJ38_RS25580 () | 33440..33772 | + | 333 | WP_001291058.1 | hypothetical protein | - |
| HHJ38_RS25585 () | 33784..36495 | + | 2712 | WP_042002545.1 | Protein TraI | Relaxase |
| HHJ38_RS25590 () | 36563..36994 | + | 432 | WP_001335086.1 | hypothetical protein | - |
| HHJ38_RS25595 () | 37206..37493 | + | 288 | Protein_51 | IS91 family transposase ISPps1 | Transposase |
| HHJ38_RS25600 () | 37600..38436 | - | 837 | WP_000480968.1 | hypothetical protein | ARG |
| HHJ38_RS25605 () | 38436..39239 | - | 804 | WP_001082319.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| HHJ38_RS25610 () | 39300..40115 | - | 816 | WP_001043260.1 | Dihydropteroate synthase | ARG |
| HHJ38_RS25625 () | 40979..43282 | - | 2304 | WP_000077663.1 | TraM recognition domain-containing protein | - |
| HHJ38_RS25630 () | 43263..44387 | - | 1125 | WP_000152378.1 | DsbC family protein | - |
| HHJ38_RS25635 () | 44384..45691 | - | 1308 | WP_001513486.1 | IncI1-type conjugal transfer protein TrbA | - |
| HHJ38_RS25640 () | 46776..47027 | + | 252 | WP_001081067.1 | hypothetical protein | - |
| HHJ38_RS25645 () | 47090..47266 | - | 177 | WP_001054907.1 | hypothetical protein | - |
| HHJ38_RS25650 () | 47418..47885 | - | 468 | WP_000598962.1 | thermonuclease family protein | - |
| HHJ38_RS25655 () | 48044..48667 | + | 624 | WP_001155251.1 | DNA-binding protein | - |
| HHJ38_RS25660 () | 48865..49080 | - | 216 | WP_000266543.1 | hypothetical protein | - |
| HHJ38_RS25665 () | 49084..49452 | - | 369 | WP_001390887.1 | hypothetical protein | - |
| HHJ38_RS25670 () | 49464..49655 | - | 192 | WP_000751583.1 | hypothetical protein | - |
| HHJ38_RS25675 () | 49751..49993 | - | 243 | WP_001363144.1 | hypothetical protein | - |
| HHJ38_RS25680 () | 50323..50475 | + | 153 | WP_001302699.1 | Hok/Gef family protein | - |
| HHJ38_RS25685 () | 50613..52199 | - | 1587 | WP_000004564.1 | TnsA endonuclease N-terminal domain-containing protein | - |
| HHJ38_RS25690 () | 52473..53126 | - | 654 | WP_001401768.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| HHJ38_RS25695 () | 53214..55379 | - | 2166 | WP_052987183.1 | DotA/TraY family protein | - |
| HHJ38_RS25700 () | 55454..56023 | - | 570 | WP_000650752.1 | conjugal transfer protein TraX | - |
| HHJ38_RS25705 () | 56020..57225 | - | 1206 | WP_001189548.1 | conjugal transfer protein TraW | - |
| HHJ38_RS25710 () | 57183..57803 | - | 621 | WP_000286854.1 | hypothetical protein | - |
| HHJ38_RS25715 () | 57803..60847 | - | 3045 | WP_052987184.1 | conjugal transfer protein | - |
| HHJ38_RS25720 () | 61142..61960 | - | 819 | WP_000753550.1 | hypothetical protein | - |
| HHJ38_RS25725 () | 61875..62126 | - | 252 | WP_001277573.1 | hypothetical protein | - |
| HHJ38_RS25730 () | 62183..62581 | - | 399 | WP_000088813.1 | hypothetical protein | - |
| HHJ38_RS25735 () | 62628..63155 | - | 528 | WP_001388619.1 | conjugal transfer protein TraQ | - |
| HHJ38_RS25740 () | 63155..63868 | - | 714 | WP_000787002.1 | conjugal transfer protein TraP | - |
| HHJ38_RS25745 () | 63865..65202 | - | 1338 | WP_001272020.1 | conjugal transfer protein TraO | - |
| HHJ38_RS25750 () | 65206..66180 | - | 975 | WP_000547386.1 | hypothetical protein | VF |
| HHJ38_RS25755 () | 66191..66886 | - | 696 | WP_001287545.1 | DotI/IcmL family type IV secretion protein | - |
| HHJ38_RS25760 () | 66898..67248 | - | 351 | WP_001056367.1 | hypothetical protein | - |
| HHJ38_RS25765 () | 67265..71326 | - | 4062 | WP_052987185.1 | DNA primase | - |
| HHJ38_RS25770 () | 71390..71680 | - | 291 | WP_000817801.1 | IcmT/TraK family protein | - |
| HHJ38_RS25775 () | 71677..72825 | - | 1149 | WP_000775210.1 | putative protein YggR | VF |
| HHJ38_RS25780 () | 72809..73645 | - | 837 | WP_000745049.1 | hypothetical protein | VF |
| HHJ38_RS25785 () | 73642..74100 | - | 459 | WP_001170111.1 | DotD/TraH family lipoprotein | - |
| HHJ38_RS25790 () | 74204..75406 | - | 1203 | WP_000979993.1 | conjugal transfer protein TraF | - |
| HHJ38_RS25795 () | 75508..76329 | - | 822 | WP_000845373.1 | hypothetical protein | - |
| HHJ38_RS25800 () | 76802..78163 | - | 1362 | WP_001168171.1 | hypothetical protein | VF |
| HHJ38_RS25805 () | 78181..78807 | - | 627 | WP_000939245.1 | prepilin peptidase | - |
| HHJ38_RS25810 () | 78823..79308 | - | 486 | WP_001080767.1 | hypothetical protein | VF |
| HHJ38_RS25815 () | 79353..79889 | - | 537 | WP_000111534.1 | hypothetical protein | VF |
| HHJ38_RS25820 () | 79951..81045 | - | 1095 | WP_000697158.1 | type II secretion system F family protein | - |
| HHJ38_RS25825 () | 81047..82555 | - | 1509 | WP_000880807.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| HHJ38_RS25830 () | 82659..83117 | - | 459 | WP_000095885.1 | hypothetical protein | VF |
| HHJ38_RS25835 () | 83107..84402 | - | 1296 | WP_000129883.1 | type 4b pilus protein PilO2 | - |
| HHJ38_RS25840 () | 84423..86042 | - | 1620 | WP_001035562.1 | Outer membrane lipoprotein BfpB | VF |
| HHJ38_RS25845 () | 86074..86511 | - | 438 | WP_000539952.1 | hypothetical protein | VF |
| HHJ38_RS25850 () | 86515..87585 | - | 1071 | WP_000730430.1 | hypothetical protein | VF |
| HHJ38_RS25855 () | 87826..88146 | - | 321 | WP_001447108.1 | hypothetical protein | - |
| HHJ38_RS25860 () | 88262..88579 | - | 318 | WP_001330559.1 | PilI type IV pilus biogenesis protein | - |
| HHJ38_RS25865 () | 88585..90279 | - | 1695 | WP_000482665.1 | flotillin family protein | - |
| HHJ38_RS25870 () | 90306..90926 | - | 621 | WP_000176497.1 | DUF1449 family protein | - |
| HHJ38_RS25875 () | 91193..91855 | - | 663 | WP_000154142.1 | hypothetical protein | - |
| HHJ38_RS25880 () | 91996..92637 | - | 642 | WP_000335849.1 | transcription termination factor NusG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|