MGE detailed information
MGE type: Conjugative plasmid MGE length: 120617 bp
Accession: NZ_CP051701 Location: 1..120617 Organism: Escherichia coli strain SCU-125 Replicon: plasmid pSCU-125-1
Accession: NZ_CP051701 Location: 1..120617 Organism: Escherichia coli strain SCU-125 Replicon: plasmid pSCU-125-1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HHJ38_RS24625 () | 1..978 | + | 978 | WP_001309253.1 | RepB family plasmid replication initiator protein | - |
| HHJ38_RS24630 () | 1221..1961 | - | 741 | WP_001066947.1 | IS91 family transposase ISMno23 | Transposase |
| HHJ38_RS24635 () | 2082..2270 | - | 189 | WP_001332784.1 | hypothetical protein | - |
| HHJ38_RS24640 () | 2637..3806 | + | 1170 | WP_001072358.1 | hypothetical protein | - |
| HHJ38_RS24645 () | 4032..4207 | - | 176 | Protein_4 | IS3 family transposase | - |
| HHJ38_RS24650 () | 4653..4925 | - | 273 | WP_001322642.1 | adhesin biosynthesis transcription regulatory family protein | - |
| HHJ38_RS24655 () | 5450..5886 | - | 437 | Protein_6 | IS3 family transposase IS2 | Transposase |
| HHJ38_RS24660 () | 6168..8138 | + | 1971 | WP_001298664.1 | Hemin receptor | VF |
| HHJ38_RS24665 () | 8145..8936 | + | 792 | WP_000977394.1 | DUF4198 domain-containing protein | - |
| HHJ38_RS24670 () | 8999..9208 | - | 210 | Protein_9 | IS66 family transposase ISKpn24 | Transposase |
| HHJ38_RS24675 () | 9301..9726 | + | 426 | WP_000422741.1 | IS66 family transposase ISEc23 | Transposase |
| HHJ38_RS24680 () | 9723..10073 | + | 351 | WP_000624722.1 | IS66 family transposase ISEc23 | Transposase |
| HHJ38_RS24685 () | 10104..11717 | + | 1614 | WP_000080195.1 | IS66 family transposase ISEc23 | Transposase |
| HHJ38_RS24690 () | 11749..12147 | - | 399 | Protein_13 | IS66 family transposase ISEc22 | Transposase |
| HHJ38_RS24695 () | 12215..12994 | - | 780 | WP_001323403.1 | IS21 family transposase IS100kyp | Transposase |
| HHJ38_RS24700 () | 12994..14016 | - | 1023 | WP_001310017.1 | IS21 family transposase IS100kyp | Transposase |
| HHJ38_RS24705 () | 14102..15037 | - | 936 | Protein_16 | IS66 family transposase ISEc22 | Transposase |
| HHJ38_RS24710 () | 15086..15433 | - | 348 | WP_000612626.1 | IS66 family transposase ISKpn24 | Transposase |
| HHJ38_RS24715 () | 15430..15834 | - | 405 | WP_000839179.1 | IS66 family transposase ISEc22 | Transposase |
| HHJ38_RS24720 () | 15863..16246 | - | 384 | Protein_19 | IS3 family transposase IS629 | Transposase |
| HHJ38_RS24725 () | 16336..17844 | - | 1509 | WP_001189111.1 | group II intron reverse transcriptase/maturase | - |
| HHJ38_RS24730 () | 18517..19256 | - | 740 | Protein_21 | IS3 family transposase IS629 | Transposase |
| HHJ38_RS24735 () | 19358..19618 | + | 261 | WP_000371882.1 | hypothetical protein | - |
| HHJ38_RS24740 () | 19615..20124 | + | 510 | WP_000194542.1 | hypothetical protein | - |
| HHJ38_RS24745 () | 20144..20491 | - | 348 | WP_000142452.1 | hypothetical protein | - |
| HHJ38_RS24750 () | 20620..20955 | + | 336 | WP_001080732.1 | colicin transporter | - |
| HHJ38_RS24755 () | 22407..23093 | + | 687 | Protein_26 | replication initiation protein | - |
| HHJ38_RS24760 () | 23425..24300 | + | 876 | WP_001224623.1 | ChaN family lipoprotein | - |
| HHJ38_RS24765 () | 24308..25084 | + | 777 | WP_000981091.1 | energy transducer TonB | - |
| HHJ38_RS24770 () | 25253..27514 | + | 2262 | WP_001100763.1 | TonB-dependent receptor | - |
| HHJ38_RS24775 () | 27583..28758 | + | 1176 | WP_001020413.1 | putative protein YncE | VF |
| HHJ38_RS24780 () | 29281..29586 | - | 306 | Protein_31 | IS91 family transposase ISSbo1 | Transposase |
| HHJ38_RS24785 () | 29612..30189 | + | 578 | Protein_32 | IS3 family transposase IS629 | Transposase |
| HHJ38_RS24790 () | 30080..30835 | - | 756 | WP_000065240.1 | IS21 family transposase ISEc10 | Transposase |
| HHJ38_RS24795 () | 30832..32331 | - | 1500 | WP_000143800.1 | IS21 family transposase ISEc10 | Transposase |
| HHJ38_RS24800 () | 32417..32767 | + | 351 | Protein_35 | IS3 family transposase IS629 | Transposase |
| HHJ38_RS24805 () | 33440..34948 | + | 1509 | WP_001189111.1 | group II intron reverse transcriptase/maturase | - |
| HHJ38_RS24810 () | 35038..35511 | + | 474 | Protein_37 | IS3 family transposase IS629 | Transposase |
| HHJ38_RS24815 () | 35514..36083 | - | 570 | WP_001336919.1 | Serine protease EspC | VF |
| HHJ38_RS24820 () | 36185..37164 | + | 980 | Protein_39 | IS5 family transposase ISKpn26 | Transposase |
| HHJ38_RS24825 () | 37314..37946 | - | 633 | Protein_40 | histidine-type phosphatase | - |
| HHJ38_RS24830 () | 38068..38553 | - | 486 | WP_000874189.1 | hypothetical protein | - |
| HHJ38_RS24835 () | 38578..39063 | - | 486 | WP_001267176.1 | TlpA family protein disulfide reductase | - |
| HHJ38_RS24840 () | 39050..39745 | - | 696 | WP_000117262.1 | Lipoprotein-releasing system ATP-binding protein LolD | VF |
| HHJ38_RS24845 () | 39750..40880 | - | 1131 | WP_000729218.1 | ABC transporter permease | - |
| HHJ38_RS24850 () | 40870..42153 | - | 1284 | WP_000964653.1 | ABC transporter permease | - |
| HHJ38_RS24855 () | 42156..43535 | - | 1380 | WP_000119836.1 | DUF2318 domain-containing protein | - |
| HHJ38_RS24860 () | 43639..44166 | - | 528 | WP_000178050.1 | iron transporter | - |
| HHJ38_RS24865 () | 44207..46093 | - | 1887 | WP_001332815.1 | FTR1 family iron permease | - |
| HHJ38_RS24870 () | 46440..47255 | - | 816 | WP_012372823.1 | Na(+)-translocating NADH-quinone reductase subunit C | - |
| HHJ38_RS24875 () | 47438..47944 | - | 507 | WP_000949451.1 | protein disulfide oxidoreductase | - |
| HHJ38_RS24880 () | 47934..48161 | - | 228 | WP_077459403.1 | DsbA family protein | - |
| HHJ38_RS24885 () | 48191..48895 | - | 705 | WP_001067838.1 | IS6 family transposase IS26 | Transposase |
| HHJ38_RS24890 () | 49952..50809 | - | 858 | WP_001673237.1 | incFII family plasmid replication initiator RepA | - |
| HHJ38_RS24895 () | 50802..50876 | - | 75 | WP_001365705.1 | RepA leader peptide Tap | - |
| HHJ38_RS24900 () | 51111..51368 | - | 258 | WP_000083826.1 | replication regulatory protein RepA | - |
| HHJ38_RS24905 () | 51608..52198 | - | 591 | WP_001526018.1 | DUF2726 domain-containing protein | - |
| HHJ38_RS24910 () | 52236..52445 | - | 210 | WP_001333231.1 | hemolysin expression modulator Hha | - |
| HHJ38_RS24915 () | 52491..52952 | - | 462 | WP_001233842.1 | thermonuclease family protein | - |
| HHJ38_RS26015 () | 52914..53015 | - | 102 | Protein_59 | nuclease | - |
| HHJ38_RS24920 () | 53197..53409 | - | 213 | WP_001309245.1 | ANR family transcriptional regulator | - |
| HHJ38_RS24925 () | 53538..54098 | - | 561 | WP_000139321.1 | fertility inhibition protein FinO | - |
| HHJ38_RS24930 () | 54201..55061 | - | 861 | WP_001526022.1 | putative protein YcjY | VF |
| HHJ38_RS24935 () | 55120..55866 | - | 747 | WP_024220513.1 | conjugal transfer pilus acetylase TraX | - |
| HHJ38_RS24940 () | 55886..61156 | - | 5271 | WP_016247957.1 | Multifunctional conjugation protein TraI | Relaxase |
| HHJ38_RS24945 () | 61156..63363 | - | 2208 | WP_087602296.1 | type IV conjugative transfer system coupling protein TraD | - |
| HHJ38_RS24950 () | 63414..64151 | - | 738 | WP_001673178.1 | hypothetical protein | - |
| HHJ38_RS24955 () | 64354..65085 | - | 732 | WP_000782451.1 | complement resistance protein TraT | - |
| HHJ38_RS24960 () | 65134..65619 | - | 486 | WP_000605869.1 | hypothetical protein | - |
| HHJ38_RS24965 () | 65635..68457 | - | 2823 | WP_001007080.1 | conjugal transfer mating pair stabilization protein TraG | - |
| HHJ38_RS24970 () | 68454..69827 | - | 1374 | WP_000944331.1 | conjugal transfer protein TraH | - |
| HHJ38_RS24975 () | 69814..70239 | - | 426 | WP_071778935.1 | F-type conjugal transfer protein TrbF | - |
| HHJ38_RS24980 () | 70187..70534 | - | 348 | WP_001309242.1 | P-type conjugative transfer protein TrbJ | - |
| HHJ38_RS24985 () | 70464..71009 | - | 546 | WP_000059830.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| HHJ38_RS24990 () | 70996..71280 | - | 285 | WP_000624107.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| HHJ38_RS24995 () | 71361..71696 | + | 336 | WP_000736414.1 | hypothetical protein | - |
| HHJ38_RS25000 () | 71677..72018 | - | 342 | WP_001298557.1 | conjugal transfer protein TrbA | - |
| HHJ38_RS25005 () | 72032..72775 | - | 744 | WP_001030385.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| HHJ38_RS25010 () | 72768..73025 | - | 258 | WP_000864314.1 | conjugal transfer protein TrbE | - |
| HHJ38_RS25015 () | 73052..74902 | - | 1851 | WP_000821859.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| HHJ38_RS25020 () | 74899..75537 | - | 639 | WP_001080251.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| HHJ38_RS25025 () | 75546..75851 | - | 306 | WP_021537841.1 | hypothetical protein | - |
| HHJ38_RS25030 () | 75881..76873 | - | 993 | WP_000830838.1 | conjugal transfer pilus assembly protein TraU | - |
| HHJ38_RS25035 () | 76870..77502 | - | 633 | WP_001203736.1 | type-F conjugative transfer system protein TraW | - |
| HHJ38_RS25040 () | 77499..77885 | - | 387 | WP_000214082.1 | type-F conjugative transfer system protein TrbI | - |
| HHJ38_RS25045 () | 77882..80512 | - | 2631 | WP_000069778.1 | type IV secretion system protein TraC | - |
| HHJ38_RS25050 () | 80879..81097 | - | 219 | WP_000556746.1 | hypothetical protein | - |
| HHJ38_RS25055 () | 81177..81650 | - | 474 | WP_000549566.1 | hypothetical protein | - |
| HHJ38_RS25060 () | 81643..81864 | - | 222 | WP_001278694.1 | conjugal transfer protein TraR | - |
| HHJ38_RS25065 () | 81999..82514 | - | 516 | WP_000809889.1 | type IV conjugative transfer system lipoprotein TraV | - |
| HHJ38_RS25070 () | 82511..82744 | - | 234 | WP_000235790.1 | conjugal transfer protein TrbG | - |
| HHJ38_RS25075 () | 82756..83109 | - | 354 | WP_012602151.1 | DUF2689 domain-containing protein | - |
| HHJ38_RS25080 () | 83063..83653 | - | 591 | WP_000002787.1 | conjugal transfer protein TraP | - |
| HHJ38_RS25085 () | 83643..85070 | - | 1428 | WP_000146665.1 | conjugal transfer protein TraB | - |
| HHJ38_RS25090 () | 85070..85774 | - | 705 | WP_072095570.1 | type-F conjugative transfer system secretin TraK | - |
| HHJ38_RS25095 () | 85785..86351 | - | 567 | WP_000399776.1 | type IV conjugative transfer system protein TraE | - |
| HHJ38_RS25100 () | 86373..86684 | - | 312 | WP_000012100.1 | type IV conjugative transfer system protein TraL | - |
| HHJ38_RS25105 () | 86699..87058 | - | 360 | WP_001098988.1 | type IV conjugative transfer system pilin TraA | - |
| HHJ38_RS25110 () | 87092..87319 | - | 228 | WP_001254388.1 | conjugal transfer relaxosome protein TraY | - |
| HHJ38_RS25115 () | 87413..88099 | - | 687 | WP_000332487.1 | PAS domain-containing protein | - |
| HHJ38_RS25120 () | 88293..88676 | - | 384 | WP_001151562.1 | relaxosome protein TraM | - |
| HHJ38_RS25125 () | 89007..89609 | + | 603 | WP_001323326.1 | hypothetical protein | VF |
| HHJ38_RS25130 () | 89904..90725 | - | 822 | WP_001234469.1 | DUF945 domain-containing protein | - |
| HHJ38_RS25135 () | 90844..91131 | - | 288 | WP_000107526.1 | hypothetical protein | - |
| HHJ38_RS25140 () | 91195..91431 | + | 237 | WP_001337416.1 | hypothetical protein | - |
| HHJ38_RS25145 () | 92047..92205 | - | 159 | WP_001302184.1 | type I toxin-antitoxin system Hok family toxin | - |
| - () | 92270..92469 | - | 200 | NuclAT_0 | - | - |
| - () | 92270..92469 | - | 200 | NuclAT_0 | - | - |
| - () | 92270..92469 | - | 200 | NuclAT_0 | - | - |
| - () | 92270..92469 | - | 200 | NuclAT_0 | - | - |
| HHJ38_RS25150 () | 92481..93200 | - | 720 | WP_001276230.1 | plasmid SOS inhibition protein A | - |
| HHJ38_RS25155 () | 93197..93631 | - | 435 | WP_000845910.1 | conjugation system SOS inhibitor PsiB | - |
| HHJ38_RS25160 () | 93686..95644 | - | 1959 | WP_001145501.1 | ParB/RepB/Spo0J family partition protein | - |
| HHJ38_RS25165 () | 95703..95936 | - | 234 | WP_000006018.1 | DUF905 domain-containing protein | - |
| HHJ38_RS25170 () | 95993..96520 | - | 528 | WP_021523730.1 | single-stranded DNA-binding protein | - |
| HHJ38_RS25175 () | 96586..96784 | + | 199 | Protein_111 | hypothetical protein | - |
| HHJ38_RS25180 () | 96893..97104 | - | 212 | Protein_112 | hypothetical protein | - |
| HHJ38_RS25185 () | 97011..97367 | + | 357 | Protein_113 | pilus protein | - |
| HHJ38_RS25190 () | 97348..97911 | - | 564 | WP_001298559.1 | class I SAM-dependent methyltransferase | - |
| HHJ38_RS25195 () | 97958..99319 | - | 1362 | WP_000170671.1 | DUF3560 domain-containing protein | - |
| HHJ38_RS25200 () | 99371..99601 | - | 231 | WP_000155844.1 | hypothetical protein | - |
| HHJ38_RS25205 () | 100097..100603 | + | 507 | WP_059338088.1 | hypothetical protein | - |
| HHJ38_RS25210 () | 100580..100771 | - | 192 | WP_001027516.1 | hypothetical protein | - |
| HHJ38_RS25215 () | 100768..101190 | - | 423 | WP_000271708.1 | DUF1380 family protein | - |
| HHJ38_RS25220 () | 101237..101539 | - | 303 | WP_072105978.1 | antirestriction protein | - |
| HHJ38_RS25225 () | 101635..102205 | - | 571 | Protein_121 | DUF1472 domain-containing protein | - |
| HHJ38_RS25230 () | 102524..102848 | - | 325 | Protein_122 | hypothetical protein | - |
| HHJ38_RS25235 () | 102893..103327 | - | 435 | WP_021539478.1 | DUF1380 family protein | - |
| HHJ38_RS25240 () | 103341..103562 | - | 222 | WP_001104873.1 | hypothetical protein | - |
| HHJ38_RS25245 () | 103563..104246 | - | 684 | WP_000086169.1 | DNA methylase | - |
| HHJ38_RS25250 () | 104322..104633 | - | 312 | WP_001310011.1 | hypothetical protein | - |
| HHJ38_RS25255 () | 104630..105532 | - | 903 | WP_169063641.1 | DUF1281 domain-containing protein | - |
| HHJ38_RS25260 () | 105951..107171 | - | 1221 | WP_000343766.1 | ISL3 family transposase ISEc53 | Transposase |
| HHJ38_RS25265 () | 107190..107708 | - | 519 | WP_000115885.1 | hypothetical protein | VF |
| HHJ38_RS25270 () | 107843..108091 | + | 249 | WP_000618110.1 | DinI-like family protein | - |
| HHJ38_RS25275 () | 108088..108525 | + | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| HHJ38_RS25280 () | 108525..109796 | + | 1272 | WP_021549745.1 | Y-family DNA polymerase | - |
| HHJ38_RS25285 () | 109801..110193 | - | 393 | WP_000340835.1 | plasmid partitioning/stability family protein | - |
| HHJ38_RS25290 () | 110198..111169 | - | 972 | WP_001103694.1 | hypothetical protein | - |
| HHJ38_RS25295 () | 111398..112042 | + | 645 | WP_000633911.1 | AAA family ATPase | - |
| HHJ38_RS25300 () | 112036..112311 | + | 276 | WP_000239529.1 | hypothetical protein | - |
| HHJ38_RS25305 () | 112449..113258 | - | 810 | WP_000016979.1 | site-specific integrase | - |
| HHJ38_RS25310 () | 113259..113564 | - | 306 | WP_001159871.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| HHJ38_RS25315 () | 113566..113784 | - | 219 | WP_000813634.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| HHJ38_RS25320 () | 116106..116747 | + | 642 | WP_021537822.1 | hypothetical protein | - |
| HHJ38_RS25325 () | 116978..117367 | + | 390 | WP_001282151.1 | IS66 family transposase ISEc8 | Transposase |
| HHJ38_RS25330 () | 117364..117711 | + | 348 | WP_000612591.1 | IS66 family transposase ISEc8 | Transposase |
| HHJ38_RS25335 () | 117761..119299 | + | 1539 | WP_021542005.1 | IS66 family transposase ISEc8 | Transposase |
| HHJ38_RS25340 () | 119396..119545 | + | 150 | Protein_144 | transposase domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|