MGE detailed information
MGE type: Conjugative plasmid MGE length: 67142 bp
Accession: NZ_CP051696 Location: 1..67142 Organism: Escherichia coli strain SCU-313 Replicon: plasmid pSCU-313-2
Accession: NZ_CP051696 Location: 1..67142 Organism: Escherichia coli strain SCU-313 Replicon: plasmid pSCU-313-2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HHJ46_RS25570 () | 1..858 | + | 858 | WP_122997317.1 | incFII family plasmid replication initiator RepA | - |
| HHJ46_RS25010 () | 1927..2190 | + | 264 | WP_001089473.1 | hypothetical protein | - |
| HHJ46_RS25015 () | 2180..2479 | + | 300 | WP_001528606.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| HHJ46_RS25020 () | 2515..3180 | - | 666 | WP_001535733.1 | hypothetical protein | - |
| HHJ46_RS25025 () | 3750..4313 | - | 564 | WP_000351266.1 | pentapeptide repeat-containing protein | - |
| HHJ46_RS25030 () | 4317..5048 | - | 732 | WP_000155032.1 | ATP-binding cassette domain-containing protein | - |
| HHJ46_RS25035 () | 5045..5770 | - | 726 | WP_000258040.1 | microcin B17 immunity protein McbE | - |
| HHJ46_RS25040 () | 5780..6970 | - | 1191 | WP_000611492.1 | YcaO-like family protein | - |
| HHJ46_RS25045 () | 6951..7769 | - | 819 | WP_001528601.1 | SagB/ThcOx family dehydrogenase | - |
| HHJ46_RS25050 () | 7771..8658 | - | 888 | WP_000243884.1 | McbB family protein | - |
| HHJ46_RS25055 () | 8685..8894 | - | 210 | WP_001535752.1 | microcin B17 | - |
| HHJ46_RS25060 () | 9424..9876 | + | 453 | WP_000670962.1 | N-acetyltransferase | - |
| HHJ46_RS25070 () | 10279..10629 | - | 351 | WP_001365718.1 | plasmid partitioning/stability family protein | - |
| HHJ46_RS25075 () | 10632..11594 | - | 963 | WP_000959884.1 | plasmid segregation protein ParM | - |
| HHJ46_RS25080 () | 12121..12909 | + | 789 | Protein_15 | DUF1281 domain-containing protein | - |
| HHJ46_RS25085 () | 13014..13330 | + | 317 | Protein_16 | hypothetical protein | - |
| HHJ46_RS25090 () | 13406..14089 | + | 684 | WP_000086172.1 | DNA methylase | - |
| HHJ46_RS25095 () | 14090..14311 | + | 222 | WP_001104873.1 | hypothetical protein | - |
| HHJ46_RS25100 () | 14325..14759 | + | 435 | WP_000274447.1 | DUF1380 family protein | - |
| HHJ46_RS25575 () | 14804..15574 | + | 771 | WP_001006242.1 | hypothetical protein | - |
| HHJ46_RS25115 () | 16113..16415 | + | 303 | WP_072257078.1 | antirestriction protein | - |
| HHJ46_RS25120 () | 16462..16884 | + | 423 | WP_000271722.1 | DUF1380 family protein | - |
| HHJ46_RS25125 () | 16881..17072 | + | 192 | WP_001027514.1 | hypothetical protein | - |
| HHJ46_RS25580 () | 17051..17602 | - | 552 | Protein_24 | hypothetical protein | - |
| HHJ46_RS25135 () | 18119..18349 | + | 231 | WP_000218642.1 | hypothetical protein | - |
| HHJ46_RS25140 () | 18401..19762 | + | 1362 | WP_000170695.1 | DUF3560 domain-containing protein | - |
| HHJ46_RS25145 () | 19809..20372 | + | 564 | WP_001298559.1 | class I SAM-dependent methyltransferase | - |
| HHJ46_RS25150 () | 20458..20901 | - | 444 | Protein_28 | hypothetical protein | - |
| HHJ46_RS25155 () | 21198..21725 | + | 528 | WP_000290834.1 | single-stranded DNA-binding protein | - |
| HHJ46_RS25160 () | 21783..22016 | + | 234 | WP_000006003.1 | DUF905 family protein | - |
| HHJ46_RS25165 () | 22077..24041 | + | 1965 | WP_169062239.1 | ParB/RepB/Spo0J family partition protein | - |
| HHJ46_RS25170 () | 24110..24544 | + | 435 | WP_000845953.1 | conjugation system SOS inhibitor PsiB | - |
| HHJ46_RS25175 () | 24541..25260 | + | 720 | WP_001276217.1 | plasmid SOS inhibition protein A | - |
| - () | 25272..25496 | + | 225 | NuclAT_0 | - | - |
| - () | 25272..25496 | + | 225 | NuclAT_0 | - | - |
| - () | 25272..25496 | + | 225 | NuclAT_0 | - | - |
| - () | 25272..25496 | + | 225 | NuclAT_0 | - | - |
| HHJ46_RS25180 () | 25281..25460 | - | 180 | WP_001309233.1 | hypothetical protein | - |
| HHJ46_RS25185 () | 25540..25698 | + | 159 | WP_001312861.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| HHJ46_RS25190 () | 25936..26314 | - | 379 | Protein_36 | hypothetical protein | - |
| HHJ46_RS25195 () | 26620..26916 | + | 297 | WP_001272251.1 | hypothetical protein | - |
| HHJ46_RS25200 () | 27027..27848 | + | 822 | WP_001234445.1 | DUF945 domain-containing protein | - |
| HHJ46_RS25205 () | 28145..28792 | - | 648 | WP_128438058.1 | hypothetical protein | VF |
| HHJ46_RS25210 () | 29068..29451 | + | 384 | WP_001151529.1 | relaxosome protein TraM | - |
| HHJ46_RS25215 () | 29643..30290 | + | 648 | WP_169062240.1 | transcriptional regulator TraJ family protein | - |
| HHJ46_RS25220 () | 30398..30637 | + | 240 | WP_042018283.1 | conjugal transfer relaxosome protein TraY | - |
| HHJ46_RS25225 () | 30671..31030 | + | 360 | WP_169062241.1 | type IV conjugative transfer system pilin TraA | - |
| HHJ46_RS25230 () | 31045..31356 | + | 312 | WP_000012116.1 | type IV conjugative transfer system protein TraL | - |
| HHJ46_RS25235 () | 31378..31944 | + | 567 | WP_000399801.1 | type IV conjugative transfer system protein TraE | - |
| HHJ46_RS25240 () | 31931..32659 | + | 729 | WP_001230771.1 | type-F conjugative transfer system secretin TraK | - |
| HHJ46_RS25245 () | 32659..34110 | + | 1452 | WP_000146663.1 | conjugal transfer protein TraB | - |
| HHJ46_RS25250 () | 34079..34666 | + | 588 | WP_001309238.1 | conjugal transfer protein TraP | - |
| HHJ46_RS25255 () | 34620..34970 | + | 351 | WP_071586941.1 | conjugal transfer protein TrbD | - |
| HHJ46_RS25260 () | 34970..35485 | + | 516 | WP_000809872.1 | type IV conjugative transfer system lipoprotein TraV | - |
| HHJ46_RS25265 () | 35620..35841 | + | 222 | WP_001278695.1 | conjugal transfer protein TraR | - |
| HHJ46_RS25270 () | 35834..36310 | + | 477 | WP_000549573.1 | hypothetical protein | - |
| HHJ46_RS25275 () | 36390..36608 | + | 219 | WP_000556745.1 | hypothetical protein | - |
| HHJ46_RS25280 () | 36636..36983 | + | 348 | WP_000836682.1 | hypothetical protein | - |
| HHJ46_RS25285 () | 37109..39739 | + | 2631 | WP_052972854.1 | type IV secretion system protein TraC | - |
| HHJ46_RS25290 () | 39736..40122 | + | 387 | WP_000214084.1 | type-F conjugative transfer system protein TrbI | - |
| HHJ46_RS25295 () | 40119..40751 | + | 633 | WP_032307988.1 | type-F conjugative transfer system protein TraW | - |
| HHJ46_RS25300 () | 40748..41740 | + | 993 | WP_000830838.1 | conjugal transfer pilus assembly protein TraU | - |
| HHJ46_RS25305 () | 41770..42075 | + | 306 | WP_000224418.1 | hypothetical protein | - |
| HHJ46_RS25310 () | 42084..42722 | + | 639 | WP_001080251.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| HHJ46_RS25315 () | 42719..44569 | + | 1851 | WP_137494881.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| HHJ46_RS25320 () | 44596..44853 | + | 258 | WP_021563038.1 | conjugal transfer protein TrbE | - |
| HHJ46_RS25325 () | 44846..45589 | + | 744 | WP_001030385.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| HHJ46_RS25330 () | 45603..45944 | + | 342 | WP_000556795.1 | conjugal transfer protein TrbA | - |
| HHJ46_RS25335 () | 46341..46625 | + | 285 | WP_000624109.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| HHJ46_RS25340 () | 46612..47157 | + | 546 | WP_169062242.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| HHJ46_RS25345 () | 47087..47434 | + | 348 | WP_071840683.1 | P-type conjugative transfer protein TrbJ | - |
| HHJ46_RS25350 () | 47382..47807 | + | 426 | WP_071780479.1 | F-type conjugal transfer protein TrbF | - |
| HHJ46_RS25355 () | 47794..49167 | + | 1374 | WP_014106974.1 | conjugal transfer protein TraH | - |
| HHJ46_RS25360 () | 49164..51986 | + | 2823 | WP_169062243.1 | conjugal transfer mating pair stabilization protein TraG | - |
| HHJ46_RS25365 () | 52001..52504 | + | 504 | WP_000605510.1 | hypothetical protein | - |
| HHJ46_RS25370 () | 52536..53267 | + | 732 | WP_000850422.1 | complement resistance protein TraT | - |
| HHJ46_RS25375 () | 53470..54207 | + | 738 | WP_000199905.1 | hypothetical protein | - |
| HHJ46_RS25380 () | 54258..56195 | + | 1938 | Protein_74 | type IV conjugative transfer system coupling protein TraD | - |
| HHJ46_RS25385 () | 56332..56670 | + | 339 | Protein_75 | conjugal transfer protein TraD | - |
| HHJ46_RS25390 () | 56670..61940 | + | 5271 | Protein_76 | Multifunctional conjugation protein TraI | Relaxase |
| HHJ46_RS25395 () | 61960..62706 | + | 747 | WP_000205718.1 | conjugal transfer pilus acetylase TraX | - |
| HHJ46_RS25400 () | 62761..63318 | + | 558 | WP_000139329.1 | fertility inhibition protein FinO | - |
| HHJ46_RS25405 () | 63470..63673 | + | 204 | WP_001336517.1 | hypothetical protein | - |
| HHJ46_RS25410 () | 64415..64876 | + | 462 | WP_000760080.1 | thermonuclease family protein | - |
| HHJ46_RS25415 () | 64979..65362 | + | 384 | WP_001109264.1 | hypothetical protein | - |
| HHJ46_RS25420 () | 65515..65952 | + | 438 | WP_000872609.1 | hypothetical protein | - |
| - () | 66047..66103 | - | 57 | NuclAT_1 | - | Antitoxin Detail |
| - () | 66047..66103 | - | 57 | NuclAT_1 | - | Antitoxin Detail |
| - () | 66047..66103 | - | 57 | NuclAT_1 | - | Antitoxin Detail |
| - () | 66047..66103 | - | 57 | NuclAT_1 | - | Antitoxin Detail |
| HHJ46_RS25425 () | 66151..66300 | + | 150 | WP_001336447.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| HHJ46_RS25430 () | 66585..66842 | + | 258 | WP_000084404.1 | replication regulatory protein RepA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|