MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 83876 bp
Accession: NZ_CP051537 Location: 947021..1030896 Organism: Helicobacter pylori strain LIM-005 Replicon: chromosome
Accession: NZ_CP051537 Location: 947021..1030896 Organism: Helicobacter pylori strain LIM-005 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HG578_RS04400 () | 942308..943798 | + | 1491 | WP_097714779.1 | Na+/H+ antiporter NhaC family protein | - |
| HG578_RS04405 () | 944114..944476 | + | 363 | WP_000953800.1 | hypothetical protein | - |
| HG578_RS04410 () | 945052..946065 | - | 1014 | WP_202134494.1 | LapA family protein | - |
| HG578_RS04415 () | 946075..946527 | - | 453 | WP_202134495.1 | 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH | - |
| HG578_RS04420 () | 946541..947410 | - | 870 | WP_033616565.1 | acetyl-CoA carboxylase, carboxyltransferase subunit beta | - |
| HG578_RS04425 () | 947491..948105 | + | 615 | WP_202134496.1 | recombination protein RecO | - |
| HG578_RS04430 () | 948116..948772 | + | 657 | WP_202134497.1 | nicotinamide-nucleotide amidohydrolase family protein | - |
| HG578_RS04435 () | 948775..949341 | - | 567 | WP_000476724.1 | hypothetical protein | - |
| HG578_RS04440 () | 949406..950038 | - | 633 | Protein_863 | NAD(P)H-dependent oxidoreductase | - |
| HG578_RS04445 () | 950049..950888 | - | 840 | WP_202134498.1 | prolipoprotein diacylglyceryl transferase | - |
| HG578_RS04450 () | 950898..951626 | - | 729 | WP_202134499.1 | RluA family pseudouridine synthase | - |
| HG578_RS04455 () | 951645..952826 | - | 1182 | WP_202134500.1 | 3-deoxy-D-manno-octulosonic acid transferase | VF |
| HG578_RS04460 () | 952827..953606 | - | 780 | WP_202134501.1 | zinc ribbon domain-containing protein | - |
| HG578_RS04465 () | 953616..954347 | - | 732 | WP_202134502.1 | Nif3-like dinuclear metal center hexameric protein | - |
| HG578_RS04470 () | 954349..955245 | - | 897 | WP_202134503.1 | glycine--tRNA ligase subunit alpha | - |
| HG578_RS04475 () | 955259..956197 | - | 939 | WP_000401698.1 | NAD(P)H-dependent glycerol-3-phosphate dehydrogenase | - |
| HG578_RS04480 () | 956329..956544 | - | 216 | WP_031250834.1 | Acyl carrier protein | VF |
| HG578_RS04485 () | 956587..956811 | - | 225 | Protein_872 | hypothetical protein | - |
| HG578_RS04490 () | 956863..958191 | - | 1329 | WP_202134504.1 | IS200-IS605 family transposase IS606 | Transposase |
| HG578_RS04495 () | 958228..958644 | + | 417 | WP_060474608.1 | IS200-IS605 family transposase IS606 | Transposase |
| HG578_RS04500 () | 958780..960159 | - | 1380 | Protein_875 | dynamin-like GTPase family protein | - |
| HG578_RS04505 () | 960159..962492 | - | 2334 | Protein_876 | dynamin family protein | - |
| HG578_RS04510 () | 962495..964141 | - | 1647 | WP_202135191.1 | dynamin family protein | - |
| HG578_RS04515 () | 964439..964720 | - | 282 | WP_000880326.1 | DUF3240 family protein | - |
| HG578_RS04520 () | 964736..967795 | - | 3060 | WP_202135192.1 | CusA/CzcA family heavy metal efflux RND transporter | - |
| HG578_RS04525 () | 967795..968844 | - | 1050 | WP_181327473.1 | sodium:proton antiporter | - |
| HG578_RS04530 () | 968865..970166 | - | 1302 | WP_202134505.1 | TolC family protein | - |
| HG578_RS04535 () | 970156..972261 | - | 2106 | WP_202134506.1 | glycine--tRNA ligase subunit beta | - |
| HG578_RS04540 () | 972378..973451 | + | 1074 | WP_202134507.1 | hypothetical protein | - |
| HG578_RS04545 () | 973464..974939 | + | 1476 | WP_202134508.1 | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | - |
| HG578_RS04550 () | 974954..975235 | + | 282 | WP_108327506.1 | Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC | - |
| HG578_RS04555 () | 975333..976652 | - | 1320 | WP_202134509.1 | Adenosylmethionine-8-amino-7-oxononanoate aminotransferase | VF |
| HG578_RS04560 () | 976782..978245 | + | 1464 | WP_202134510.1 | peptidylprolyl isomerase | - |
| HG578_RS04565 () | 978260..979741 | + | 1482 | WP_187924798.1 | cell division protein FtsA | - |
| HG578_RS04570 () | 979873..981030 | + | 1158 | WP_097718461.1 | cell division protein FtsZ | - |
| HG578_RS04575 () | 981299..982596 | - | 1298 | Protein_890 | hypothetical protein | - |
| HG578_RS04580 () | 982742..982882 | - | 141 | WP_000093207.1 | hypothetical protein | - |
| HG578_RS04585 () | 982935..983759 | - | 825 | WP_000343428.1 | mechanosensitive ion channel family protein | - |
| HG578_RS04590 () | 983868..984086 | - | 219 | WP_001232436.1 | hypothetical protein | - |
| HG578_RS04595 () | 984241..986190 | + | 1950 | Protein_894 | Type IV secretion system protein PtlC | VF |
| HG578_RS04600 () | 986183..988114 | + | 1932 | WP_202135193.1 | type IA DNA topoisomerase | - |
| HG578_RS04605 () | 988244..989230 | + | 987 | WP_077652292.1 | hypothetical protein | VF |
| HG578_RS04610 () | 989230..990756 | + | 1527 | WP_202134511.1 | hypothetical protein | VF |
| HG578_RS04615 () | 990756..991664 | + | 909 | Protein_898 | Type IV secretion system protein virB10 | VF |
| HG578_RS04620 () | 991664..992522 | + | 859 | Protein_899 | Type IV secretion system protein VirB11 | VF |
| HG578_RS04625 () | 992519..992974 | + | 456 | WP_202134512.1 | mobilization protein | - |
| HG578_RS04630 () | 992971..993261 | + | 291 | WP_000159808.1 | hypothetical protein | - |
| HG578_RS04635 () | 993262..993819 | + | 558 | WP_202134513.1 | hypothetical protein | - |
| HG578_RS04640 () | 993820..995568 | + | 1749 | WP_202134514.1 | Conjugal transfer protein TraG | VF |
| HG578_RS04645 () | 995810..996091 | - | 282 | WP_000921939.1 | type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family | Toxin Detail |
| HG578_RS04650 () | 996084..996398 | - | 315 | WP_000073112.1 | hypothetical protein | Antitoxin Detail |
| HG578_RS04655 () | 996698..998611 | + | 1914 | WP_202134515.1 | relaxase/mobilization nuclease domain-containing protein | - |
| HG578_RS04660 () | 998636..999809 | - | 1174 | Protein_907 | hypothetical protein | - |
| HG578_RS04665 () | 999853..1000137 | - | 285 | WP_000394655.1 | hypothetical protein ; Integrase | Integrase |
| HG578_RS04670 () | 1000220..1000876 | - | 657 | WP_000587379.1 | ParA family protein | - |
| HG578_RS04675 () | 1001145..1009574 | - | 8430 | Protein_910 | DEAD/DEAH box helicase family protein | - |
| HG578_RS04680 () | 1009738..1009884 | + | 147 | WP_021173276.1 | hypothetical protein | - |
| HG578_RS04685 () | 1009877..1010890 | + | 1014 | WP_078270635.1 | DUF1738 domain-containing protein | - |
| HG578_RS04690 () | 1010897..1012192 | + | 1296 | WP_187925247.1 | hypothetical protein | - |
| HG578_RS04695 () | 1012251..1014464 | + | 2214 | WP_202134516.1 | competence protein | - |
| HG578_RS04700 () | 1014474..1015874 | + | 1401 | WP_000645640.1 | hypothetical protein | - |
| HG578_RS04705 () | 1015926..1016213 | + | 288 | WP_202134517.1 | hypothetical protein | - |
| HG578_RS04710 () | 1016215..1017478 | + | 1264 | Protein_917 | P-type conjugative transfer protein TrbL | - |
| HG578_RS04715 () | 1017551..1018234 | + | 684 | WP_001153486.1 | hypothetical protein | - |
| HG578_RS04720 () | 1018316..1019387 | - | 1072 | Protein_919 | Tyrosine recombinase XerH ; Integrase | Integrase |
| HG578_RS04735 () | 1024355..1024795 | + | 441 | WP_000057815.1 | hypothetical protein | - |
| HG578_RS04740 () | 1024839..1026665 | + | 1827 | WP_202134518.1 | DUF262 domain-containing HNH endonuclease family protein | - |
| HG578_RS04745 () | 1026816..1027703 | + | 888 | WP_202134519.1 | hypothetical protein | - |
| HG578_RS04750 () | 1027810..1029657 | - | 1848 | WP_187913366.1 | arginine decarboxylase | - |
| HG578_RS04755 () | 1029672..1030841 | - | 1170 | WP_187868323.1 | glycosyltransferase family 4 protein | - |
| HG578_RS04760 () | 1030846..1031274 | - | 429 | WP_001158293.1 | PaaI family thioesterase | - |
| HG578_RS04765 () | 1031289..1032074 | - | 786 | WP_202134520.1 | tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB | - |
| HG578_RS04770 () | 1032078..1033097 | - | 1020 | WP_202134521.1 | ferrochelatase | - |
| HG578_RS04775 () | 1033098..1035041 | - | 1944 | WP_202134522.1 | methionine--tRNA ligase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|